| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_23250 | | S-adenosylmethionine tRNA ribosyltransferase | 1.0 | PS417_00305 | | cytochrome oxidase subunit I | 0.44 | 4 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS24905 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 1.00 | PFLU_RS00295 | | cytochrome c oxidase subunit I | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS24905 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 1.00 | PFLU_RS00295 | | cytochrome c oxidase subunit I | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.94 | Pf1N1B4_3005 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | 0.97 | Pf1N1B4_1854 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.94 | AO353_15785 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.96 | AO353_10835 | | cytochrome oxidase subunit I | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_4883 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | 0.97 | PfGW456L13_614 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_06695 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.97 | AO356_11165 | | cytochrome oxidase subunit I | low | > 104 |
| Pseudomonas sp. RS175 | 0.91 | PFR28_00276 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.97 | PFR28_04690 | | Cytochrome c oxidase subunit 1 | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_3199 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | 0.97 | Pf6N2E2_4099 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 103 |
| Pseudomonas putida KT2440 | 0.89 | PP_0832 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.94 | PP_0104 | | Cytochrome c oxidase subunit 1 | low | > 96 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_17425 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.93 | OH686_12320 | | cytochrome c oxidase, subunit I | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.85 | Psest_1241 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.91 | Psest_4327 | | cytochrome c oxidase, subunit I | low | > 67 |
| Shewanella oneidensis MR-1 | 0.73 | SO3114 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) | 0.82 | SO4607 | | cytochrome c oxidase, subunit I (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.73 | Shewana3_1434 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) | 0.82 | Shewana3_3992 | | cytochrome c oxidase, subunit I (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.73 | Shew_2338 | | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) | 0.81 | Shew_0124 | | cytochrome-c oxidase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.72 | Sama_2194 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) | 0.83 | Sama_3484 | | cytochrome-c oxidase (RefSeq) | low | > 62 |
| Marinobacter adhaerens HP15 | 0.65 | HP15_1478 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.90 | HP15_3772 | | cytochrome c oxidase, subunit I | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.64 | MIT1002_02814 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.78 | MIT1002_04034 | | Cytochrome c oxidase subunit 1 | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.62 | B158DRAFT_2515 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.77 | B158DRAFT_0136 | | cytochrome c oxidase, subunit I | low | > 40 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS06170 | | S-adenosylmethionine tRNA ribosyltransferase | 0.70 | HSERO_RS20785 | | cytochrome oxidase subunit I | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.55 | RS_RS13570 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.71 | RS_RS01790 | | cytochrome c oxidase subunit I | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS01275 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.70 | ABZR87_RS06800 | | cytochrome c oxidase subunit I | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS11620 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.71 | RPSI07_RS22360 | | cytochrome c oxidase subunit I | low | > 81 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS15370 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.71 | ABCV34_RS13270 | | cytochrome c oxidase subunit I | low | > 48 |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS07945 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.71 | UW163_RS02630 | | cytochrome c oxidase subunit I | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS05680 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.71 | RALBFv3_RS10950 | | cytochrome c oxidase subunit I | low | > 76 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS17395 | | S-adenosylmethionine tRNA ribosyltransferase | 0.70 | RR42_RS01880 | | cytochrome oxidase subunit I | low | > 128 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.2167.1 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | 0.70 | Xcc-8004.4845.1 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS02885 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.73 | LRK55_RS06860 | | cytochrome c oxidase subunit I | low | > 63 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS15025 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.69 | ABIE51_RS19205 | | cytochrome c oxidase subunit I | low | > 62 |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS01590 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.70 | ABID97_RS23960 | | cytochrome c oxidase subunit I | low | > 91 |
| Rhodanobacter denitrificans FW104-10B01 | 0.52 | LRK54_RS03135 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.73 | LRK54_RS07120 | | cytochrome c oxidase subunit I | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.51 | OKGIIK_10005 | queA | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.74 | OKGIIK_16520 | ctaD | cytochrome c oxidase subunit I | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS09545 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.73 | ABZR86_RS12925 | | cytochrome c oxidase subunit I | low | > 74 |
| Variovorax sp. SCN45 | 0.50 | GFF5535 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) | 0.71 | GFF2298 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.49 | Ac3H11_778 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | 0.70 | Ac3H11_3891 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 79 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS03405 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.72 | BPHYT_RS02645 | | cytochrome oxidase subunit I | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS26635 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.72 | QEN71_RS01500 | | cytochrome c oxidase subunit I | low | > 153 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF2801 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | 0.69 | GFF689 | | Cytochrome c oxidase polypeptide I (EC 1.9.3.1) | low | > 90 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_04671 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.72 | H281DRAFT_01993 | | cytochrome c oxidase subunit 1 | 0.55 | 27 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_000832 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.72 | ABIE53_000674 | | cytochrome c oxidase subunit 1 | low | > 113 |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_01696 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.54 | MPMX19_00885 | | Cytochrome c oxidase subunit 1 | low | > 112 |
| Azospirillum brasilense Sp245 | 0.43 | AZOBR_RS06300 | | S-adenosylmethionine tRNA ribosyltransferase | 0.54 | AZOBR_RS10585 | | cytochrome C oxidase subunit I | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.43 | A4249_RS08775 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.50 | A4249_RS00110 | | cytochrome c oxidase subunit I | low | > 48 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.43 | DVU3351 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) | 0.40 | DVU1815 | | cytochrome c oxidase, subunit I, putative (TIGR) | low | > 55 |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_1180 | | Queuosine biosynthesis protein (RefSeq) | 0.49 | Dshi_2383 | | Cytochrome c oxidase subunit I type (RefSeq) | low | > 64 |
| Synechococcus elongatus PCC 7942 | 0.40 | Synpcc7942_2348 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.44 | Synpcc7942_2603 | ctaD | Cytochrome-c oxidase | low | > 38 |
| Rhizobium sp. OAE497 | 0.40 | ABIE40_RS09430 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.52 | ABIE40_RS04065 | | cytochrome c oxidase subunit I | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c17420 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA | 0.49 | PGA1_c06710 | | cytochrome c oxidase subunit 1-beta | — | — |
| Magnetospirillum magneticum AMB-1 | 0.39 | AMB_RS03085 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.57 | AMB_RS10960 | | cytochrome c oxidase subunit I | low | > 64 |
| Bosea sp. OAE506 | 0.39 | ABIE41_RS17830 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.50 | ABIE41_RS22950 | | cytochrome c oxidase subunit I | low | > 77 |
| Agrobacterium fabrum C58 | 0.39 | Atu1678 | | S-adenosylmethionine tRNA ribosyltransferase-isomerase | 0.53 | Atu0768 | | cytochrome-c oxidase chain I | low | > 89 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.38 | CA264_18125 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.37 | CA264_01315 | | cytochrome c oxidase subunit I | — | — |
| Sinorhizobium meliloti 1021 | 0.38 | SMc01207 | | S-adenosylmethionine--tRNA ribosyltransferase-isomerase | 0.53 | SMc00010 | | cytochrome C oxidase polypeptide I transmembrane protein | low | > 103 |
| Caulobacter crescentus NA1000 | 0.38 | CCNA_01658 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.49 | CCNA_03517 | | cytochrome c oxidase polypeptide I coxA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.38 | CCNA_01658 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.49 | CCNA_03517 | | cytochrome c oxidase polypeptide I coxA | low | > 67 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.38 | Echvi_0042 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.35 | Echvi_2103 | | Heme/copper-type cytochrome/quinol oxidases, subunit 1 | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_1011 | | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 0.50 | Ga0059261_2008 | | cytochrome c oxidase, subunit I | low | > 68 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.38 | ABZR88_RS03940 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.36 | ABZR88_RS03660 | | cbb3-type cytochrome c oxidase subunit I | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.37 | DvMF_2053 | | S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) | 0.41 | DvMF_0536 | | cytochrome c oxidase, subunit I (RefSeq) | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.37 | CA265_RS07505 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.34 | CA265_RS17815 | | cytochrome c oxidase subunit I | — | — |
| Rhodopseudomonas palustris CGA009 | 0.36 | TX73_013480 | | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | 0.54 | TX73_004290 | | cytochrome c oxidase subunit I | low | > 86 |
Not shown: 38 genomes with orthologs for PS417_23250 only; 1 genomes with orthologs for PS417_00305 only