Conservation of cofitness between PS417_27585 and PS417_19690 in Pseudomonas simiae WCS417

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27585 diaminopimelate epimerase 1.0 PS417_19690 histidine kinase 0.36 1
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29270 diaminopimelate epimerase 0.97 PFLU_RS21655 response regulator — —
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29270 diaminopimelate epimerase 0.97 PFLU_RS21655 response regulator low > 109
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2173 Diaminopimelate epimerase (EC 5.1.1.7) 0.94 Pf1N1B4_3627 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_844 Diaminopimelate epimerase (EC 5.1.1.7) 0.94 PfGW456L13_4330 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY low > 87
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_09040 diaminopimelate epimerase 0.95 AO353_18790 histidine kinase low > 101
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_12735 diaminopimelate epimerase 0.90 AO356_03725 histidine kinase low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) 0.90 Pf6N2E2_2572 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY low > 103
Pseudomonas sp. RS175 0.88 PFR28_04376 Diaminopimelate epimerase 0.92 PFR28_00853 Chemotaxis protein CheY — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0183 diaminopimelate epimerase 0.87 Psyr_3436 Response regulator receiver — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0183 diaminopimelate epimerase 0.87 Psyr_3436 Response regulator receiver — —
Pseudomonas stutzeri RCH2 0.81 Psest_3765 diaminopimelate epimerase 0.84 Psest_1741 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains — —
Pseudomonas sp. S08-1 0.81 OH686_13795 diaminopimelate epimerase 0.88 OH686_02725 Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY — —
Pseudomonas putida KT2440 0.81 PP_5228 diaminopimelate epimerase 0.81 PP_4340 response regulator for chemotactic signal transduction — —
Marinobacter adhaerens HP15 0.64 HP15_248 diaminopimelate epimerase 0.84 HP15_2301 response regulator receiver domain protein (CheY-) — —
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_00640 diaminopimelate epimerase 0.80 CSW01_10330 chemotaxis protein CheY — —
Dechlorosoma suillum PS 0.59 Dsui_0649 diaminopimelate epimerase 0.65 Dsui_1719 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains — —
Dickeya dianthicola ME23 0.58 DZA65_RS21100 diaminopimelate epimerase 0.65 DZA65_RS14050 chemotaxis protein CheY — —
Dickeya dianthicola 67-19 0.58 HGI48_RS20055 diaminopimelate epimerase 0.66 HGI48_RS13565 chemotaxis response regulator CheY — —
Rahnella sp. WP5 0.58 EX31_RS15155 diaminopimelate epimerase 0.66 EX31_RS11355 chemotaxis protein CheY low > 89
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4478 diaminopimelate epimerase (EC 5.1.1.7) 0.64 EX28DRAFT_0674 Response regulator receiver domain low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04241 Diaminopimelate epimerase 0.65 OHPLBJKB_01846 Chemotaxis protein CheY — —
Escherichia coli ECRC62 0.58 BNILDI_04975 dapF diaminopimelate epimerase 0.65 BNILDI_15385 cheY chemotaxis regulatory protein CheY — —
Escherichia coli BW25113 0.58 b3809 dapF diaminopimelate epimerase (VIMSS) 0.65 b1882 cheY chemotaxis regulator transmitting signal to flagellar motor component (NCBI) — —
Escherichia coli ECOR27 0.58 NOLOHH_06560 dapF diaminopimelate epimerase 0.65 NOLOHH_16595 cheY chemotaxis regulatory protein CheY — —
Escherichia coli ECRC98 0.58 JDDGAC_18055 dapF diaminopimelate epimerase 0.65 JDDGAC_00730 cheY chemotaxis regulatory protein CheY — —
Escherichia coli ECRC101 0.58 OKFHMN_14430 dapF diaminopimelate epimerase 0.65 OKFHMN_26155 cheY chemotaxis regulatory protein CheY — —
Escherichia coli BL21 0.58 ECD_03685 diaminopimelate epimerase 0.65 ECD_01853 chemotaxis regulator transmitting signal to flagellar motor component — —
Escherichia coli ECRC102 0.58 NIAGMN_12185 dapF diaminopimelate epimerase 0.65 NIAGMN_01905 cheY chemotaxis regulatory protein CheY — —
Escherichia coli ECRC99 0.58 KEDOAH_13720 dapF diaminopimelate epimerase 0.65 KEDOAH_01950 cheY chemotaxis regulatory protein CheY — —
Escherichia fergusonii Becca 0.58 EFB2_04828 Diaminopimelate epimerase 0.65 EFB2_02061 Chemotaxis protein CheY — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS01340 diaminopimelate epimerase 0.66 HER17_RS08125 chemotaxis response regulator CheY — —
Escherichia coli ECOR38 0.58 HEPCGN_13135 dapF diaminopimelate epimerase 0.65 HEPCGN_04575 cheY chemotaxis regulatory protein CheY — —
Escherichia coli ECRC101 0.58 MCAODC_04935 dapF diaminopimelate epimerase 0.65 MCAODC_19250 cheY chemotaxis regulatory protein CheY — —
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS21455 diaminopimelate epimerase 0.63 HSERO_RS10130 chemotaxis protein CheY — —
Enterobacter sp. TBS_079 0.57 MPMX20_04467 Diaminopimelate epimerase 0.65 MPMX20_02786 Chemotaxis protein CheY low > 85
Escherichia coli Nissle 1917 0.57 ECOLIN_RS21865 diaminopimelate epimerase 0.65 ECOLIN_RS10750 chemotaxis response regulator CheY — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF237 Diaminopimelate epimerase (EC 5.1.1.7) 0.66 GFF1663 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY — —
Dickeya dadantii 3937 0.57 DDA3937_RS19900 diaminopimelate epimerase 0.66 DDA3937_RS13520 chemotaxis response regulator CheY — —
Serratia liquefaciens MT49 0.57 IAI46_00715 diaminopimelate epimerase 0.65 IAI46_16010 chemotaxis response regulator CheY — —
Shewanella sp. ANA-3 0.56 Shewana3_0391 dapF diaminopimelate epimerase (RefSeq) 0.81 Shewana3_1360 response regulator receiver protein (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO4308 dapF diaminopimelate epimerase (NCBI ptt file) 0.81 SO3209 cheY-3 chemotaxis protein CheY (NCBI ptt file) — —
Pantoea sp. MT58 0.56 IAI47_18410 diaminopimelate epimerase 0.66 IAI47_08335 chemotaxis response regulator CheY low > 76
Erwinia tracheiphila SCR3 0.56 LU632_RS24145 dapF diaminopimelate epimerase 0.66 LU632_RS13520 cheY chemotaxis response regulator CheY — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS01250 diaminopimelate epimerase 0.65 RR42_RS35780 chemotaxis protein CheY — —
Alteromonas macleodii MIT1002 0.56 MIT1002_00159 Diaminopimelate epimerase 0.78 MIT1002_01104 Chemotaxis protein CheY — —
Shewanella loihica PV-4 0.55 Shew_0323 dapF diaminopimelate epimerase (RefSeq) 0.81 Shew_1384 response regulator receiver protein (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS00365 diaminopimelate epimerase 0.63 QEN71_RS28980 chemotaxis response regulator CheY — —
Ralstonia solanacearum UW163 0.54 UW163_RS03515 diaminopimelate epimerase 0.59 UW163_RS21730 chemotaxis protein CheY — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS10065 diaminopimelate epimerase 0.59 RALBFv3_RS17420 chemotaxis protein CheY — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS05580 diaminopimelate epimerase 0.59 ABZR87_RS17995 chemotaxis response regulator CheY low > 80
Ralstonia solanacearum PSI07 0.53 RPSI07_RS23305 diaminopimelate epimerase 0.58 RPSI07_RS06225 chemotaxis protein CheY — —
Shewanella amazonensis SB2B 0.53 Sama_3249 dapF diaminopimelate epimerase (RefSeq) 0.82 Sama_2279 response regulator receiver protein (RefSeq) — —
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS01665 diaminopimelate epimerase 0.62 BPHYT_RS18965 chemotaxis protein CheY — —
Paraburkholderia graminis OAS925 0.52 ABIE53_000428 diaminopimelate epimerase 0.61 ABIE53_000118 two-component system chemotaxis response regulator CheY — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_02200 diaminopimelate epimerase 0.61 H281DRAFT_05748 response regulator receiver protein — —
Ralstonia solanacearum GMI1000 0.50 RS_RS00675 diaminopimelate epimerase 0.59 RS_RS23890 chemotaxis protein CheY — —
Variovorax sp. SCN45 0.49 GFF4493 Diaminopimelate epimerase (EC 5.1.1.7) 0.63 GFF5768 Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_1993 Diaminopimelate epimerase (EC 5.1.1.7) 0.51 Ac3H11_1387 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY — —
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS15015 diaminopimelate epimerase 0.73 ABZR86_RS20270 chemotaxis response regulator CheY — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS13465 diaminopimelate epimerase 0.63 ABCV34_RS05810 chemotaxis response regulator CheY — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF545 Diaminopimelate epimerase (EC 5.1.1.7) 0.58 GFF1435 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY — —
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_15335 dapF diaminopimelate epimerase 0.68 OKGIIK_02835 cheY chemotaxis response regulator CheY — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS08310 diaminopimelate epimerase 0.73 LRK55_RS13325 chemotaxis response regulator CheY — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS08545 diaminopimelate epimerase 0.73 LRK54_RS13585 chemotaxis response regulator CheY — —
Lysobacter sp. OAE881 0.37 ABIE51_RS03025 diaminopimelate epimerase 0.74 ABIE51_RS16870 chemotaxis response regulator CheY — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.845.1 Diaminopimelate epimerase (EC 5.1.1.7) 0.77 Xcc-8004.2833.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY — —
Bosea sp. OAE506 0.32 ABIE41_RS11700 diaminopimelate epimerase 0.49 ABIE41_RS23275 response regulator — —
Rhodopseudomonas palustris CGA009 0.28 TX73_001300 diaminopimelate epimerase 0.52 TX73_006030 response regulator — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1867 dapF diaminopimelate epimerase (TIGR) 0.66 DVU3228 cheY-3 chemotaxis protein CheY (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_0561 dapF diaminopimelate epimerase (RefSeq) 0.68 DvMF_2010 response regulator receiver protein (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_2394 diaminopimelate epimerase (EC 5.1.1.7) 0.38 Ga0059261_1116 Response regulator receiver domain — —

Not shown: 18 genomes with orthologs for PS417_27585 only; 11 genomes with orthologs for PS417_19690 only