Conservation of cofitness between HP15_3742 and HP15_3491 in Marinobacter adhaerens HP15

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 1.0 HP15_3491 conserved hypothetical protein 0.50 1
Pseudomonas stutzeri RCH2 0.45 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.40 Psest_0255 RNA methyltransferase, RsmD family — —
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Pseudomonas putida KT2440 0.42 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.41 PP_5114 putative adenine methyltransferase 0.66 23
Pseudomonas sp. S08-1 0.42 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.41 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.40 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) low > 78
Serratia liquefaciens MT49 0.42 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.42 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Escherichia coli ECRC62 0.41 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECOR27 0.41 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 57
Escherichia coli ECRC99 0.41 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli BL21 0.41 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.44 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.71 18
Escherichia coli ECRC98 0.41 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC101 0.41 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC101 0.41 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC102 0.41 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli BW25113 0.41 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.44 b3465 yhhF predicted methyltransferase (NCBI) 0.65 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.45 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.80 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.42 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.42 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Escherichia coli ECOR38 0.41 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 85
Escherichia coli Nissle 1917 0.41 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase low > 52
Escherichia fergusonii Becca 0.41 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.44 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.30 68
Klebsiella michiganensis M5al 0.41 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.40 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase low > 92
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_10630 16S rRNA methyltransferase 0.39 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.62 1
Pectobacterium carotovorum WPP14 0.40 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.46 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_11275 16S rRNA methyltransferase 0.40 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.74 1
Pantoea sp. MT58 0.40 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.39 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase low > 76
Erwinia tracheiphila SCR3 0.40 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.43 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.40 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Enterobacter asburiae PDN3 0.40 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.41 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.41 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.38 21
Dickeya dadantii 3937 0.40 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Pseudomonas sp. RS175 0.40 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.40 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.42 1
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.41 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.46 8
Shewanella loihica PV-4 0.39 Shew_3738 sun protein (RefSeq) 0.37 Shew_3607 putative methyltransferase (RefSeq) 0.72 6
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 1
Enterobacter sp. TBS_079 0.39 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.41 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D low > 85
Rahnella sp. WP5 0.39 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase low > 89
Dickeya dianthicola 67-19 0.39 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.44 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase low > 71
Pseudomonas simiae WCS417 0.39 PS417_00085 16S rRNA methyltransferase 0.41 PS417_26825 16S rRNA methyltransferase — —
Dickeya dianthicola ME23 0.39 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.43 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.41 22
Shewanella sp. ANA-3 0.38 Shewana3_0033 sun protein (RefSeq) 0.41 Shewana3_3973 putative methyltransferase (RefSeq) 0.75 1
Shewanella oneidensis MR-1 0.37 SO0030 sun sun protein (NCBI ptt file) 0.38 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.58 1
Shewanella amazonensis SB2B 0.37 Sama_0041 sun protein (RefSeq) 0.37 Sama_3469 hypothetical protein (RefSeq) 0.72 1
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB 0.37 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) low > 40
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 81
Alteromonas macleodii MIT1002 0.34 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.35 MIT1002_03683 Ribosomal RNA small subunit methyltransferase D low > 70
Dechlorosoma suillum PS 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.36 Dsui_1027 RNA methyltransferase, RsmD family 0.44 45
Lysobacter sp. OAE881 0.34 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.31 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Ralstonia solanacearum GMI1000 0.33 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.36 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 52
Ralstonia solanacearum UW163 0.33 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.28 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.38 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 74
Acinetobacter radioresistens SK82 0.32 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.31 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D low > 36
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.29 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.28 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 90
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS01475 16S rRNA methyltransferase 0.29 BPHYT_RS02815 methyltransferase low > 109
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.36 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.58 14
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.29 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.48 10
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.36 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 59
Castellaniella sp019104865 MT123 0.30 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.29 ABCV34_RS10145 RsmD family RNA methyltransferase low > 48
Paraburkholderia graminis OAS925 0.29 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.27 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase low > 113
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS00355 methyltransferase 0.31 HSERO_RS20695 methyltransferase 0.32 1
Acidovorax sp. GW101-3H11 0.28 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.23 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS20450 16S rRNA methyltransferase 0.33 RR42_RS01990 methyltransferase 0.32 47
Azospirillum sp. SherDot2 0.20 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.17 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.22 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.32 16
Rhodospirillum rubrum S1H 0.18 Rru_A0243 tRNA/rRNA cytosine-C5-methylase (NCBI) 0.22 Rru_A0653 hypothetical protein (NCBI) — —
Agrobacterium fabrum C58 0.18 Atu2825 Sun protein 0.23 Atu0690 hypothetical protein 0.26 24
Rhizobium sp. OAE497 0.17 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.23 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 107
Rhodopseudomonas palustris CGA009 0.17 TX73_000155 transcription antitermination factor NusB 0.20 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.17 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.21 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 48
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases 0.22 Ga0059261_0246 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 68

Not shown: 10 genomes with orthologs for HP15_3742 only; 12 genomes with orthologs for HP15_3491 only