| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c11040 | | dnaK suppressor protein DksA | 1.0 | PGA1_c35960 | | nitrogen regulatory protein PtsN | 0.58 | 1 |
| Dinoroseobacter shibae DFL-12 | 0.81 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.67 | Dshi_3582 | | putative PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.67 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | 0.41 | ABIE41_RS00115 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS19350 | | RNA polymerase-binding protein DksA | 0.44 | AMB_RS19930 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | 0.45 | Rru_A0009 | | PTS IIA-like nitrogen-regulatory protein PtsN (NCBI) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.62 | TX73_020255 | | RNA polymerase-binding protein DksA | 0.39 | TX73_000270 | | PTS IIA-like nitrogen regulatory protein PtsN | 0.61 | 2 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS11245 | | molecular chaperone DnaK | 0.43 | AZOBR_RS18880 | | nitrogen regulatory protein | — | — |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | 0.42 | ABIE40_RS01870 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | 0.43 | MPMX19_02670 | | Nitrogen regulatory protein | — | — |
| Sinorhizobium meliloti 1021 | 0.60 | SMc00469 | | DnaK suppressor protein | 0.43 | SMc01141 | | nitrogen regulatory IIA protein | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | 0.44 | Ga0059261_2190 | | PTS IIA-like nitrogen-regulatory protein PtsN | low | > 68 |
| Agrobacterium fabrum C58 | 0.59 | Atu1359 | | dnaK deletion suppressor protein | 0.42 | Atu0330 | | nitrogen regulatory IIA protein | — | — |
| Caulobacter crescentus NA1000 | 0.59 | CCNA_02663 | | DnaK suppressor protein DksA | 0.40 | CCNA_03710 | | nitrogen regulatory IIA protein | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.59 | CCNA_02663 | | DnaK suppressor protein DksA | 0.40 | CCNA_03710 | | nitrogen regulatory IIA protein | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.56 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.39 | A4249_RS16085 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 48 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.24 | ABCV34_RS14340 | | PTS sugar transporter subunit IIA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | 0.28 | RALBFv3_RS11160 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS03935 | | RNA polymerase-binding protein DksA | 0.28 | UW163_RS02420 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS01640 | | molecular chaperone DnaK | 0.29 | BPHYT_RS02895 | | PTS sugar transporter subunit IIA | — | — |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS00230 | | RNA polymerase-binding protein DksA | 0.29 | RS_RS02010 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Paraburkholderia graminis OAS925 | 0.41 | ABIE53_000423 | | DnaK suppressor protein | 0.28 | ABIE53_000716 | | PTS system nitrogen regulatory IIA component | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_02205 | | transcriptional regulator, TraR/DksA family | 0.29 | H281DRAFT_01929 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | 0.28 | ABZR87_RS07050 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | 0.29 | RPSI07_RS22140 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | 0.29 | QEN71_RS01745 | | PTS sugar transporter subunit IIA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS00840 | | molecular chaperone DnaK | 0.31 | HSERO_RS19525 | | PTS sugar transporter subunit IIA | — | — |
| Dechlorosoma suillum PS | 0.40 | Dsui_2717 | | RNA polymerase-binding protein DksA | 0.29 | Dsui_0702 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.39 | RR42_RS01030 | | molecular chaperone DnaK | 0.28 | RR42_RS02075 | | PTS sugar transporter subunit IIA | — | — |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.32 | Psest_3315 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.28 | B158DRAFT_2078 | | PTS IIA-like nitrogen-regulatory protein PtsN | low | > 40 |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.29 | Pf1N1B4_1082 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas sp. RS175 | 0.37 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.31 | PFR28_00171 | | Nitrogen regulatory protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_14420 | | molecular chaperone DnaK | 0.31 | AO353_05190 | | PTS fructose transporter subunit IIA | — | — |
| Pseudomonas sp. S08-1 | 0.36 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.29 | OH686_08555 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Serratia liquefaciens MT49 | 0.36 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.39 | IAI46_22480 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.31 | PFLU_RS04390 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.31 | PFLU_RS04390 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 0.27 | PP_0950 | | phosphotransferase system enzyme IIA, regulation of potassium transport | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.29 | Psyr_4149 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.29 | PfGW456L13_5016 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_16095 | | molecular chaperone DnaK | 0.29 | AO356_07045 | | PTS fructose transporter subunit IIA | — | — |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_03690 | | DnaK suppressor protein | 0.30 | MIT1002_00825 | | Nitrogen regulatory protein | low | > 70 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.29 | Psyr_4149 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas simiae WCS417 | 0.35 | PS417_23875 | | molecular chaperone DnaK | 0.30 | PS417_04335 | | PTS fructose transporter subunit IIA | — | — |
| Marinobacter adhaerens HP15 | 0.35 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.41 | HP15_2444 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.39 | DDA3937_RS01520 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.38 | ECOLIN_RS18435 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC101 | 0.35 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.39 | OKFHMN_17930 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC62 | 0.35 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.39 | BNILDI_01805 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli BL21 | 0.35 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.39 | ECD_03069 | | sugar-specific enzyme IIA component of PTS | — | — |
| Escherichia coli ECRC101 | 0.35 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.39 | MCAODC_08450 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.39 | KEDOAH_10220 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.39 | NIAGMN_15690 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli BW25113 | 0.35 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.39 | b3204 | ptsN | sugar-specific enzyme IIA component of PTS (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.35 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.38 | EFB2_00619 | | Nitrogen regulatory protein | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.39 | OHPLBJKB_00496 | | Nitrogen regulatory protein | low | > 73 |
| Pantoea sp. MT58 | 0.35 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.40 | IAI47_17195 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.39 | HEPCGN_16805 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | low | > 85 |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.39 | NOLOHH_09730 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Erwinia tracheiphila SCR3 | 0.35 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.35 | LU632_RS21290 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.39 | JDDGAC_21555 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Enterobacter sp. TBS_079 | 0.34 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.41 | MPMX20_04110 | | Nitrogen regulatory protein | low | > 85 |
| Enterobacter asburiae PDN3 | 0.34 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.41 | EX28DRAFT_3258 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Rahnella sp. WP5 | 0.34 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.36 | EX31_RS12390 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Dickeya dianthicola 67-19 | 0.34 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.39 | HGI48_RS01435 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 71 |
| Dickeya dianthicola ME23 | 0.34 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.39 | DZA65_RS01500 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.34 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.39 | GFF2948 | | PTS system nitrogen-specific IIA component, PtsN | low | > 78 |
| Klebsiella michiganensis M5al | 0.34 | BWI76_RS05015 | | transcriptional regulator | 0.41 | BWI76_RS25275 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.37 | HER17_RS20070 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 75 |
| Shewanella amazonensis SB2B | 0.33 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.33 | Sama_3090 | | nitrogen regulatory IIA protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.33 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.34 | Shewana3_0670 | | PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.33 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.37 | Shew_3313 | | PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.32 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.33 | SO3963 | ptsN | nitrogen regulatory IIA protein (NCBI ptt file) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.37 | CSW01_12825 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.31 | DVU2150 | dksA | dnaK suppressor protein, putative (TIGR) | 0.23 | DVU1630 | ptsN | PTS system, IIA component (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.31 | DvMF_0008 | | transcriptional regulator, TraR/DksA family (RefSeq) | 0.22 | DvMF_0425 | | putative PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | — | — |
Not shown: 1 genomes with orthologs for PGA1_c11040 only; 7 genomes with orthologs for PGA1_c35960 only