Conservation of cofitness between GFF4870 and GFF3490 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4870 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway 1.0 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.42 4
Escherichia fergusonii Becca 0.95 EFB2_01105 tRNA threonylcarbamoyladenosine dehydratase 0.92 EFB2_02244 Exodeoxyribonuclease III low > 86
Escherichia coli Nissle 1917 0.95 ECOLIN_RS15670 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 ECOLIN_RS09750 exodeoxyribonuclease III low > 55
Escherichia coli ECOR38 0.95 HEPCGN_19350 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.93 HEPCGN_05265 xthA exodeoxyribonuclease III low > 87
Escherichia coli ECOR27 0.95 NOLOHH_11975 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 NOLOHH_17415 xthA exodeoxyribonuclease III low > 75
Escherichia coli BW25113 0.95 b2812 ygdL hypothetical protein (NCBI) 0.92 b1749 xthA exonuclease III (NCBI) low > 76
Escherichia coli ECRC62 0.95 BNILDI_10480 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 BNILDI_16200 xthA exodeoxyribonuclease III low > 75
Escherichia coli BL21 0.95 ECD_02663 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA 0.92 ECD_01718 exonuclease III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_00919 tRNA threonylcarbamoyladenosine dehydratase 0.92 OHPLBJKB_01983 Exodeoxyribonuclease III low > 73
Escherichia coli ECRC99 0.93 KEDOAH_08035 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 KEDOAH_01210 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC98 0.93 JDDGAC_23760 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 JDDGAC_01475 xthA exodeoxyribonuclease III low > 86
Escherichia coli ECRC101 0.93 MCAODC_10620 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 MCAODC_18510 xthA exodeoxyribonuclease III low > 87
Escherichia coli ECRC102 0.93 NIAGMN_17865 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 NIAGMN_01165 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC100 0.93 OKFHMN_20095 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.92 OKFHMN_26900 xthA exodeoxyribonuclease III low > 80
Enterobacter sp. TBS_079 0.89 MPMX20_03675 tRNA threonylcarbamoyladenosine dehydratase 0.90 MPMX20_01864 Exodeoxyribonuclease III low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2888 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.90 EX28DRAFT_1753 exodeoxyribonuclease III low > 76
Klebsiella michiganensis M5al 0.88 BWI76_RS22975 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.89 BWI76_RS11665 exodeoxyribonuclease III low > 92
Rahnella sp. WP5 0.84 EX31_RS13130 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.81 EX31_RS06330 exodeoxyribonuclease III low > 89
Serratia liquefaciens MT49 0.84 IAI46_20360 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 IAI46_14290 exodeoxyribonuclease III low > 86
Pantoea sp. MT58 0.83 IAI47_04005 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 IAI47_08990 exodeoxyribonuclease III low > 76
Erwinia tracheiphila SCR3 0.83 LU632_RS06230 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.82 LU632_RS12950 xthA exodeoxyribonuclease III low > 74
Dickeya dadantii 3937 0.82 DDA3937_RS05030 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 DDA3937_RS10310 exodeoxyribonuclease III low > 74
Pectobacterium carotovorum WPP14 0.81 HER17_RS16435 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.79 HER17_RS11085 exodeoxyribonuclease III low > 75
Dickeya dianthicola ME23 0.78 DZA65_RS05375 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 DZA65_RS10795 exodeoxyribonuclease III low > 75
Dickeya dianthicola 67-19 0.78 HGI48_RS05035 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.83 HGI48_RS10320 exodeoxyribonuclease III low > 71
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_11750 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.67 CSW01_09315 exodeoxyribonuclease III low > 62
Shewanella loihica PV-4 0.61 Shew_3251 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.66 Shew_2262 exonuclease III (RefSeq) — —
Shewanella amazonensis SB2B 0.61 Sama_0546 HesA/MoeB/ThiF family protein (RefSeq) 0.60 Sama_2139 exodeoxyribonuclease III (RefSeq) low > 62
Shewanella sp. ANA-3 0.58 Shewana3_0735 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.66 Shewana3_1503 exonuclease III (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO3895 HesA/MoeB/ThiF family protein (NCBI ptt file) 0.66 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.57 HP15_266 UBA/THIF-type NAD/FAD binding protein 0.61 HP15_1776 exonuclease III low > 73
Alteromonas macleodii MIT1002 0.54 MIT1002_01936 Molybdopterin-synthase adenylyltransferase 0.66 MIT1002_01652 Exodeoxyribonuclease III low > 70
Pseudomonas putida KT2440 0.53 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) 0.67 PP_2890 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI low > 96
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS02715 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.28 QEN71_RS09020 exodeoxyribonuclease III low > 153
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04134 tRNA A37 threonylcarbamoyladenosine dehydratase 0.27 H281DRAFT_00456 Exodeoxyribonuclease III low > 103
Ralstonia solanacearum GMI1000 0.51 RS_RS03895 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.27 RS_RS08025 exodeoxyribonuclease III low > 80
Paraburkholderia graminis OAS925 0.51 ABIE53_003371 tRNA A37 threonylcarbamoyladenosine dehydratase 0.27 ABIE53_002802 exodeoxyribonuclease-3 low > 113
Pseudomonas stutzeri RCH2 0.51 Psest_1619 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.67 Psest_2130 exodeoxyribonuclease III low > 67
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_4719 HesA/MoeB/ThiF family protein related to EC-YgdL 0.68 PfGW456L13_2599 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS15990 heme biosynthesis protein HemY 0.27 BPHYT_RS12925 exodeoxyribonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.67 PFLU_RS18930 exodeoxyribonuclease III low > 109
Pseudomonas fluorescens SBW25 0.51 PFLU_RS06230 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.67 PFLU_RS18930 exodeoxyribonuclease III low > 109
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_06085 thiamine biosynthesis protein ThiF 0.68 AO356_01060 exonuclease III low > 104
Pseudomonas simiae WCS417 0.51 PS417_06165 thiamine biosynthesis protein ThiF 0.67 PS417_16980 exonuclease III low > 88
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS09175 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.27 ABZR87_RS13495 exodeoxyribonuclease III low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein 0.66 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_3081 HesA/MoeB/ThiF family protein related to EC-YgdL 0.68 Pf6N2E2_142 Exodeoxyribonuclease III (EC 3.1.11.2) low > 103
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_1333 UBA/THIF-type NAD/FAD binding fold protein 0.66 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_16420 thiamine biosynthesis protein ThiF 0.66 AO353_27875 exonuclease III low > 101
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_3074 HesA/MoeB/ThiF family protein related to EC-YgdL 0.67 Pf1N1B4_3995 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Pseudomonas sp. RS175 0.50 PFR28_00387 tRNA threonylcarbamoyladenosine dehydratase 0.67 PFR28_02754 Exodeoxyribonuclease III low > 88
Pseudomonas sp. S08-1 0.50 OH686_06545 HesA/MoeB/ThiF family protein 0.66 OH686_00905 exodeoxyribonuclease III low > 80
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0922 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.59 B158DRAFT_1291 exodeoxyribonuclease III low > 40
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06230 heme biosynthesis protein HemY 0.27 HSERO_RS15630 exodeoxyribonuclease III low > 78
Dechlorosoma suillum PS 0.47 Dsui_1346 dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis 0.28 Dsui_0044 exodeoxyribonuclease III low > 51
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS13100 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.28 RALBFv3_RS01700 exodeoxyribonuclease III low > 76
Ralstonia solanacearum UW163 0.47 UW163_RS00465 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.28 UW163_RS15010 exodeoxyribonuclease III — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS20115 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.27 RPSI07_RS15785 exodeoxyribonuclease III low > 81
Lysobacter sp. OAE881 0.46 ABIE51_RS12585 tRNA threonylcarbamoyladenosine dehydratase 0.29 ABIE51_RS01755 exodeoxyribonuclease III low > 62
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS00565 ThiF family adenylyltransferase 0.27 ABZR86_RS14930 exodeoxyribonuclease III low > 74
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS15305 heme biosynthesis protein HemY 0.26 RR42_RS07325 exodeoxyribonuclease III 0.26 89
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS14805 tRNA threonylcarbamoyladenosine dehydratase 0.25 LRK54_RS08625 exodeoxyribonuclease III low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS14520 tRNA threonylcarbamoyladenosine dehydratase 0.25 LRK55_RS08390 exodeoxyribonuclease III low > 63
Acinetobacter radioresistens SK82 0.42 MPMX26_00481 tRNA threonylcarbamoyladenosine dehydratase 0.16 MPMX26_02938 Exodeoxyribonuclease low > 36
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3494.1 Molybdopterin biosynthesis protein MoeB 0.27 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) low > 74
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_03630 tcdA tRNA A37 threonylcarbamoyladenosine dehydratase 0.26 OKGIIK_15390 xth exodeoxyribonuclease III low > 52
Variovorax sp. OAS795 0.40 ABID97_RS16680 tRNA threonylcarbamoyladenosine dehydratase 0.28 ABID97_RS09955 exodeoxyribonuclease III low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4538 Probable HesA/MoeB/ThiF family protein 0.27 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) low > 90
Acidovorax sp. GW101-3H11 0.37 Ac3H11_2482 Probable HesA/MoeB/ThiF family protein 0.26 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Variovorax sp. SCN45 0.33 GFF289 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.28 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) low > 127
Castellaniella sp019104865 MT123 0.32 ABCV34_RS00665 tRNA threonylcarbamoyladenosine dehydratase 0.29 ABCV34_RS03115 exodeoxyribonuclease III — —
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS00200 tRNA threonylcarbamoyladenosine dehydratase 0.20 HMPREF1058_RS17100 exodeoxyribonuclease III low > 67
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS06980 tRNA threonylcarbamoyladenosine dehydratase 0.25 HMPREF1078_RS00480 exodeoxyribonuclease III low > 61
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS01100 tRNA threonylcarbamoyladenosine dehydratase 0.20 ABI39_RS13020 exodeoxyribonuclease III low > 72
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS03125 tRNA threonylcarbamoyladenosine dehydratase 0.25 HMPREF1181_RS16605 exodeoxyribonuclease III low > 56
Bacteroides thetaiotaomicron VPI-5482 0.23 BT3639 ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis (NCBI ptt file) 0.24 BT0630 exodeoxyribonuclease (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.22 BACOVA_03472 ThiF family protein 0.24 BACOVA_02252 exodeoxyribonuclease III low > 94

Not shown: 0 genomes with orthologs for GFF4870 only; 27 genomes with orthologs for GFF3490 only