| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | 1.0 | GFF3064 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | 0.50 | 13 |
| Escherichia coli Nissle 1917 | 0.93 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | ECOLIN_RS16465 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 55 |
| Escherichia fergusonii Becca | 0.93 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | 0.87 | EFB2_00942 | | tRNA (guanine-N(7)-)-methyltransferase | 0.37 | 22 |
| Escherichia coli ECRC62 | 0.92 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.88 | BNILDI_09650 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Escherichia coli ECRC102 | 0.92 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | NIAGMN_16970 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.92 | OHPLBJKB_03994 | | tRNA-dihydrouridine(20/20a) synthase | 0.88 | OHPLBJKB_00756 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 73 |
| Escherichia coli ECOR27 | 0.92 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.88 | NOLOHH_11065 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Escherichia coli ECOR38 | 0.92 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | HEPCGN_18475 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.54 | 66 |
| Escherichia coli BL21 | 0.92 | ECD_03921 | | tRNA-dihydrouridine synthase A | 0.88 | ECD_02790 | | tRNA m(7)G46 methyltransferase, SAM-dependent | low | > 61 |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | 0.87 | BWI76_RS24150 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 92 |
| Escherichia coli ECRC99 | 0.92 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | KEDOAH_08935 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | — | — |
| Escherichia coli ECRC100 | 0.92 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | OKFHMN_19205 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 80 |
| Escherichia coli ECRC98 | 0.92 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | JDDGAC_22835 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 86 |
| Escherichia coli BW25113 | 0.92 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | 0.88 | b2960 | yggH | tRNA(m7G46)-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.91 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.87 | MCAODC_09725 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.60 | 21 |
| Enterobacter asburiae PDN3 | 0.91 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | 0.89 | EX28DRAFT_2997 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | 0.87 | MPMX20_03817 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 85 |
| Serratia liquefaciens MT49 | 0.83 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.77 | IAI46_21460 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.81 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.77 | HER17_RS16620 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Pantoea sp. MT58 | 0.80 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.80 | IAI47_03565 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 76 |
| Dickeya dadantii 3937 | 0.80 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.77 | DDA3937_RS04905 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.68 | 16 |
| Rahnella sp. WP5 | 0.80 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.75 | EX31_RS02730 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 89 |
| Dickeya dianthicola 67-19 | 0.78 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.77 | HGI48_RS04915 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 71 |
| Dickeya dianthicola ME23 | 0.78 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.77 | DZA65_RS05250 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.74 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.66 | CSW01_02415 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.73 | LU632_RS23765 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.80 | LU632_RS05425 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.44 | 37 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.64 | Shewana3_1182 | trmB | tRNA (guanine-N(7)-)-methyltransferase (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.68 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.63 | Sama_2489 | trmB | tRNA (guanine-N(7)-)-methyltransferase (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.68 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.63 | SO3367 | | conserved hypothetical protein TIGR00091 (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.66 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.64 | Shew_1124 | trmB | tRNA (guanine-N(7))-methyltransferase (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.58 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | 0.58 | B158DRAFT_0203 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | 0.63 | MIT1002_00237 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 70 |
| Azospirillum brasilense Sp245 | 0.57 | AZOBR_RS15935 | | tRNA-dihydrouridine synthase A | 0.13 | AZOBR_RS01440 | | tRNA (guanine-N(7)-)-methyltransferase | — | — |
| Pseudomonas putida KT2440 | 0.57 | PP_2169 | | tRNA-dihydrouridine synthase A | 0.56 | PP_5103 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_2706 | | tRNA dihydrouridine synthase A | 0.52 | Psest_0268 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 67 |
| Dyella japonica UNC79MFTsu3.2 | 0.56 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | ABZR86_RS11650 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.39 | 22 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | 0.49 | HP15_278 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 73 |
| Pseudomonas sp. S08-1 | 0.56 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | 0.54 | OH686_14290 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | QEN71_RS03220 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.54 | 40 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.55 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.56 | Psyr_4739 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.55 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.56 | Psyr_4739 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.55 | PFLU_RS28415 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.55 | PFLU_RS28415 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 109 |
| Pseudomonas simiae WCS417 | 0.55 | PS417_07740 | | tRNA-dihydrouridine synthase A | 0.55 | PS417_26770 | | tRNA (guanine-N7)-methyltransferase | low | > 88 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | 0.48 | HSERO_RS02470 | | tRNA (guanine-N7)-methyltransferase | low | > 78 |
| Rhodanobacter denitrificans FW104-10B01 | 0.54 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | LRK54_RS11985 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 59 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | 0.47 | BPHYT_RS15470 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 109 |
| Rhodanobacter denitrificans MT42 | 0.54 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | LRK55_RS11710 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 63 |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | RPSI07_RS20505 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 81 |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | 0.55 | Pf1N1B4_2332 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_00295 | | tRNA-dihydrouridine synthase A | 0.55 | AO353_08210 | | tRNA (guanine-N7)-methyltransferase | low | > 101 |
| Paraburkholderia graminis OAS925 | 0.53 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | 0.47 | ABIE53_003260 | | tRNA (guanine-N7-)-methyltransferase | low | > 113 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.45 | UW163_RS00810 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | — | — |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.45 | ABZR87_RS08805 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.45 | 23 |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.45 | RALBFv3_RS12755 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.44 | OKGIIK_11900 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 52 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | 0.47 | H281DRAFT_04036 | | tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) | low | > 103 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | 0.56 | PFR28_04251 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 88 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | RS_RS03535 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 80 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.44 | ABID97_RS18030 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 91 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | 0.55 | Pf6N2E2_4591 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_02170 | | tRNA-dihydrouridine synthase A | 0.55 | AO356_13380 | | tRNA (guanine-N7)-methyltransferase | 0.28 | 46 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | 0.47 | RR42_RS15625 | | tRNA (guanine-N7)-methyltransferase | low | > 128 |
| Acinetobacter radioresistens SK82 | 0.52 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | 0.39 | MPMX26_01105 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 36 |
| Acidovorax sp. GW101-3H11 | 0.52 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | 0.45 | Ac3H11_4163 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | low | > 79 |
| Rhizobium sp. OAE497 | 0.51 | ABIE40_RS10895 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.19 | ABIE40_RS01670 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.51 | A4249_RS10515 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | A4249_RS13980 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 48 |
| Rhodopseudomonas palustris CGA009 | 0.51 | TX73_010150 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.19 | TX73_002295 | | tRNA (guanine(46)-N(7))-methyltransferase TrmB | 0.40 | 44 |
| Variovorax sp. SCN45 | 0.51 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | 0.44 | GFF593 | | tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33) | low | > 127 |
| Agrobacterium fabrum C58 | 0.50 | Atu1515 | | hypothetical protein | 0.18 | Atu0363 | | putative tRNA (guanine-N(7)-)-methyltransferase | low | > 89 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | ABIE51_RS16550 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 62 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF4791 | | tRNA dihydrouridine synthase A | 0.42 | GFF5184 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | low | > 90 |
| Pseudomonas fluorescens GW456-L13 | 0.49 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | 0.55 | PfGW456L13_1001 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | 0.36 | 60 |
| Dinoroseobacter shibae DFL-12 | 0.49 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | 0.17 | Dshi_1021 | | tRNA (guanine-N(7)-)-methyltransferase (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.46 | Rru_A1621 | | Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) | 0.18 | Rru_A3777 | | hypothetical protein (NCBI) | low | > 58 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.44 | ABCV34_RS08995 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.43 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.16 | SMc01108 | | tRNA (guanine-N(7)-)-methyltransferase | 0.67 | 35 |