Conservation of cofitness between PGA1_c14380 and PGA1_c00030 in Phaeobacter inhibens DSM 17395

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c14380 ATP-dependent DNA helicase RecG 1.0 PGA1_c00030 DNA replication and repair protein RecF 0.49 7
Dinoroseobacter shibae DFL-12 0.64 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.68 4
Magnetospirillum magneticum AMB-1 0.52 AMB_RS12400 ATP-dependent DNA helicase RecG 0.40 AMB_RS03285 DNA replication and repair protein RecF — —
Azospirillum sp. SherDot2 0.52 MPMX19_00951 ATP-dependent DNA helicase RecG 0.39 MPMX19_02716 DNA replication and repair protein RecF — —
Rhizobium sp. OAE497 0.50 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.38 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Azospirillum brasilense Sp245 0.50 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.35 AZOBR_RS17670 recombinase RecF 0.36 30
Bosea sp. OAE506 0.48 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.34 ABIE41_RS04170 DNA replication/repair protein RecF low > 77
Agrobacterium fabrum C58 0.48 Atu1780 ATP-dependent DNA helicase 0.37 Atu0073 recF-like protein 0.61 5
Sinorhizobium meliloti 1021 0.47 SMc00228 ATP-dependent DNA helicase RecG 0.36 SMc02863 recombination protein F 0.77 4
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_01504 ATP-dependent DNA helicase recG 0.33 CCNA_00158 DNA replication and repair protein recF low > 67
Caulobacter crescentus NA1000 0.45 CCNA_01504 ATP-dependent DNA helicase recG 0.33 CCNA_00158 DNA replication and repair protein recF low > 66
Rhodopseudomonas palustris CGA009 0.44 TX73_013795 ATP-dependent DNA helicase RecG 0.33 TX73_000015 DNA replication/repair protein RecF low > 86
Rhodospirillum rubrum S1H 0.43 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.31 Rru_A0003 RecF protein (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.34 Ga0059261_2727 DNA replication and repair protein RecF — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS04765 ATP-dependent DNA helicase RecG 0.32 A4249_RS15360 DNA replication/repair protein RecF low > 48
Lysobacter sp. OAE881 0.35 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.14 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.12 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Escherichia coli ECRC102 0.34 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC99 0.34 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECOR27 0.34 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli ECRC101 0.34 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.34 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.12 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.34 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC62 0.34 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.12 BNILDI_04365 recF DNA replication/repair protein RecF — —
Marinobacter adhaerens HP15 0.34 HP15_309 DNA helicase, ATP-dependent, RecG 0.13 HP15_3705 DNA replication and repair protein recF 0.55 25
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli BW25113 0.34 b3652 recG ATP-dependent DNA helicase (NCBI) 0.12 b3700 recF recombination protein F (NCBI) 0.49 8
Escherichia coli BL21 0.34 ECD_03509 ATP-dependent DNA helicase 0.12 ECD_03583 gap repair protein 0.94 1
Pseudomonas simiae WCS417 0.34 PS417_27870 ATP-dependent DNA helicase RecG 0.12 PS417_00015 recombinase RecF 0.38 27
Escherichia coli ECOR38 0.34 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Escherichia coli Nissle 1917 0.34 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.90 1
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.48 9
Escherichia fergusonii Becca 0.34 EFB2_00136 ATP-dependent DNA helicase RecG 0.12 EFB2_00003 DNA replication and repair protein RecF low > 86
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.43 9
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_12380 ATP-dependent DNA helicase RecG 0.12 AO356_11635 recombinase RecF 0.58 4
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.12 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.12 GFF1756 DNA recombination and repair protein RecF 0.54 28
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.12 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.32 71
Pantoea sp. MT58 0.34 IAI47_00500 ATP-dependent DNA helicase RecG 0.14 IAI47_00015 DNA replication/repair protein RecF low > 76
Pseudomonas stutzeri RCH2 0.33 Psest_4192 ATP-dependent DNA helicase RecG 0.09 Psest_0004 recF protein — —
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Shewanella oneidensis MR-1 0.33 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.51 21
Pseudomonas sp. RS175 0.33 PFR28_04435 ATP-dependent DNA helicase RecG 0.11 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_09320 ATP-dependent DNA helicase RecG 0.12 AO353_10480 recombinase RecF 0.38 45
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.13 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Erwinia tracheiphila SCR3 0.33 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.12 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Shewanella sp. ANA-3 0.33 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.59 5
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Pectobacterium carotovorum WPP14 0.33 HER17_RS21395 ATP-dependent DNA helicase RecG 0.13 HER17_RS00015 DNA replication/repair protein RecF low > 75
Klebsiella michiganensis M5al 0.33 BWI76_RS27440 DNA helicase RecG 0.12 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Enterobacter asburiae PDN3 0.33 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Serratia liquefaciens MT49 0.33 IAI46_24905 ATP-dependent DNA helicase RecG 0.14 IAI46_00015 DNA replication/repair protein RecF 0.80 7
Pseudomonas putida KT2440 0.33 PP_5310 junction-specific ATP-dependent DNA helicase 0.11 PP_0012 DNA replication and repair protein low > 96
Rahnella sp. WP5 0.33 EX31_RS15820 ATP-dependent DNA helicase RecG 0.12 EX31_RS05975 DNA replication/repair protein RecF low > 89
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.75 19
Enterobacter sp. TBS_079 0.33 MPMX20_00084 ATP-dependent DNA helicase RecG 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.45 10
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.33 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.48 13
Dickeya dadantii 3937 0.33 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.14 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Dickeya dianthicola 67-19 0.32 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.14 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Shewanella loihica PV-4 0.32 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.32 MIT1002_00111 ATP-dependent DNA helicase RecG 0.11 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pseudomonas sp. S08-1 0.32 OH686_13505 ATP-dependent DNA helicase RecG 0.11 OH686_12620 DNA recombination and repair protein RecF low > 80
Dickeya dianthicola ME23 0.32 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.14 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.11 Synpcc7942_2250 recF recombination protein F — —
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.14 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.14 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Acinetobacter radioresistens SK82 0.32 MPMX26_02732 ATP-dependent DNA helicase RecG 0.12 MPMX26_00003 DNA replication and repair protein RecF low > 36
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15020 DNA helicase RecG 0.13 CA264_17475 DNA replication and repair protein RecF 0.57 8
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0201 ATP-dependent DNA helicase RecG 0.11 Psyr_0003 DNA replication and repair protein RecF 0.51 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0201 ATP-dependent DNA helicase RecG 0.11 Psyr_0003 DNA replication and repair protein RecF 0.57 6
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_13680 DNA helicase RecG 0.13 CSW01_00065 DNA replication and repair protein RecF low > 62
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1162 ATP-dependent DNA helicase RecG 0.15 Echvi_1156 recF protein 0.87 1
Kangiella aquimarina DSM 16071 0.31 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.10 B158DRAFT_0366 DNA replication and repair protein RecF low > 40
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS22835 ATP-dependent DNA helicase RecG 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.81 3
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.15 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Fusobacterium nucleatum SB010 0.28 HUW76_01465 ATP-dependent DNA helicase RecG 0.14 HUW76_00025 DNA replication/repair protein RecF — —
Mycobacterium tuberculosis H37Rv 0.22 Rv2973c Probable ATP-dependent DNA helicase RecG 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) low > 58

Not shown: 17 genomes with orthologs for PGA1_c14380 only; 2 genomes with orthologs for PGA1_c00030 only