Conservation of cofitness between HP15_784 and HP15_250 in Marinobacter adhaerens HP15

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_784 ribonuclease 3 1.0 HP15_250 site-specific tyrosine recombinase XerC 0.52 14
Pseudomonas putida KT2440 0.60 PP_1433 Ribonuclease 3 0.44 PP_5230 Tyrosine recombinase XerC — —
Pseudomonas stutzeri RCH2 0.59 Psest_3092 ribonuclease III, bacterial 0.46 Psest_3767 tyrosine recombinase XerC low > 67
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_17495 ribonuclease III 0.45 AO356_12725 recombinase XerC — —
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_2187 ribonuclease III, bacterial 0.47 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_12455 ribonuclease 3 0.45 CSW01_00650 tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5426 Ribonuclease III (EC 3.1.26.3) 0.46 Pf6N2E2_4416 Tyrosine recombinase XerC — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_3951 RNAse III 0.46 Psyr_0185 tyrosine recombinase XerC subunit — —
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_3951 RNAse III 0.46 Psyr_0185 tyrosine recombinase XerC subunit — —
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_04510 ribonuclease III 0.44 AO353_09050 recombinase XerC — —
Pseudomonas fluorescens SBW25 0.56 PFLU_RS05260 ribonuclease III 0.40 PFLU_RS29280 tyrosine recombinase XerC — —
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS05260 ribonuclease III 0.40 PFLU_RS29280 tyrosine recombinase XerC — —
Pseudomonas simiae WCS417 0.56 PS417_05190 ribonuclease III 0.40 PS417_27595 recombinase XerC — —
Pseudomonas sp. S08-1 0.54 OH686_20080 ribonuclease III 0.46 OH686_13785 tyrosine recombinase XerC — —
Pseudomonas sp. RS175 0.54 PFR28_03523 Ribonuclease 3 0.45 PFR28_04378 Tyrosine recombinase XerC — —
Shewanella amazonensis SB2B 0.53 Sama_0880 rnc ribonuclease III (RefSeq) 0.48 Sama_3247 integrase/recombinase XerC (RefSeq) — —
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_892 Ribonuclease III (EC 3.1.26.3) 0.44 Pf1N1B4_2171 Tyrosine recombinase XerC — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4840 Ribonuclease III (EC 3.1.26.3) 0.45 PfGW456L13_842 Tyrosine recombinase XerC — —
Shewanella sp. ANA-3 0.52 Shewana3_3026 rnc ribonuclease III (RefSeq) 0.45 Shewana3_0393 tyrosine recombinase XerC (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO1348 rnc ribonuclease III (NCBI ptt file) 0.44 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.52 HER17_RS05815 ribonuclease III 0.45 HER17_RS01350 tyrosine recombinase XerC — —
Escherichia coli ECRC62 0.52 BNILDI_11885 rnc ribonuclease III 0.46 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.52 EFB2_01329 Ribonuclease 3 0.45 EFB2_04826 Tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.52 JDDGAC_25075 rnc ribonuclease III 0.46 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli BL21 0.52 ECD_02461 RNase III 0.46 ECD_03687 site-specific tyrosine recombinase — —
Escherichia coli ECRC101 0.52 MCAODC_11940 rnc ribonuclease III 0.46 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli BW25113 0.52 b2567 rnc ribonuclease III (NCBI) 0.46 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.49 7
Escherichia coli ECOR38 0.52 HEPCGN_20555 rnc ribonuclease III 0.46 HEPCGN_13125 xerC tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_0079 ribonuclease III, bacterial 0.46 EX28DRAFT_4480 tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.52 NIAGMN_19180 rnc ribonuclease III 0.46 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.52 NOLOHH_13085 rnc ribonuclease III 0.46 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Shewanella loihica PV-4 0.52 Shew_1054 ribonuclease III (RefSeq) 0.46 Shew_0325 tyrosine recombinase XerC (RefSeq) — —
Escherichia coli ECRC99 0.52 KEDOAH_06810 rnc ribonuclease III 0.46 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli Nissle 1917 0.52 ECOLIN_RS14530 ribonuclease III 0.46 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.52 OKFHMN_21410 rnc ribonuclease III 0.46 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01140 Ribonuclease 3 0.46 OHPLBJKB_04239 Tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.51 BWI76_RS21320 ribonuclease 3 0.46 BWI76_RS01210 tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.51 LU632_RS15385 rnc ribonuclease III 0.44 LU632_RS24135 xerC tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.51 MPMX20_03438 Ribonuclease 3 0.44 MPMX20_04465 Tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2475 Ribonuclease III (EC 3.1.26.3) 0.46 GFF239 Tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.51 DZA65_RS16900 ribonuclease III 0.46 DZA65_RS21090 tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.51 DDA3937_RS15735 ribonuclease III 0.47 DDA3937_RS19890 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.51 HGI48_RS15820 ribonuclease III 0.47 HGI48_RS20045 tyrosine recombinase XerC — —
Pantoea sp. MT58 0.50 IAI47_04880 ribonuclease III 0.45 IAI47_18400 tyrosine recombinase XerC — —
Serratia liquefaciens MT49 0.50 IAI46_19550 ribonuclease III 0.45 IAI46_00725 tyrosine recombinase XerC — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.3673.1 Ribonuclease III (EC 3.1.26.3) 0.43 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Rahnella sp. WP5 0.49 EX31_RS21835 ribonuclease III 0.45 EX31_RS15165 tyrosine recombinase XerC — —
Ralstonia solanacearum UW163 0.48 UW163_RS11950 ribonuclease III 0.39 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS14485 ribonuclease III 0.39 RALBFv3_RS09675 tyrosine recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS10205 ribonuclease III 0.40 ABZR87_RS05065 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS18975 ribonuclease III 0.40 RPSI07_RS23690 tyrosine recombinase XerC — —
Alteromonas macleodii MIT1002 0.47 MIT1002_02713 Ribonuclease 3 0.43 MIT1002_00157 Tyrosine recombinase XerC — —
Ralstonia solanacearum GMI1000 0.47 RS_RS05265 ribonuclease 3 0.39 RS_RS00260 Tyrosine recombinase XerC 1 — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS07150 ribonuclease III 0.43 ABZR86_RS15025 tyrosine recombinase XerC — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS14040 ribonuclease III 0.36 RR42_RS00615 recombinase XerC — —
Lysobacter sp. OAE881 0.46 ABIE51_RS13860 ribonuclease III 0.41 ABIE51_RS03035 tyrosine recombinase XerC — —
Dechlorosoma suillum PS 0.45 Dsui_2460 ribonuclease III 0.46 Dsui_0651 tyrosine recombinase XerC — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02156 Ribonuclease 3 0.35 MPMX26_02230 Tyrosine recombinase XerC — —
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_07870 rnc ribonuclease III 0.41 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Rhodanobacter denitrificans MT42 0.43 LRK55_RS16685 ribonuclease III 0.41 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS16970 ribonuclease III 0.39 LRK54_RS08535 tyrosine recombinase XerC low > 59
Castellaniella sp019104865 MT123 0.42 ABCV34_RS08325 ribonuclease III 0.35 ABCV34_RS13455 tyrosine recombinase XerC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF3346 Ribonuclease III (EC 3.1.26.3) 0.39 GFF547 Tyrosine recombinase XerC — —
Variovorax sp. OAS795 0.39 ABID97_RS08365 ribonuclease III 0.35 ABID97_RS06150 tyrosine recombinase XerC low > 91
Acidovorax sp. GW101-3H11 0.39 Ac3H11_1566 Ribonuclease III (EC 3.1.26.3) 0.37 Ac3H11_1995 Tyrosine recombinase XerC — —
Variovorax sp. SCN45 0.38 GFF3870 Ribonuclease III (EC 3.1.26.3) 0.35 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_0243 rnc ribonuclease III (RefSeq) 0.25 DvMF_0767 integrase family protein (RefSeq) — —
Fusobacterium nucleatum SB010 0.29 HUW76_02250 ribonuclease III 0.16 HUW76_06795 tyrosine-type recombinase/integrase — —
Rhodopseudomonas palustris CGA009 0.29 TX73_013975 ribonuclease III 0.27 TX73_000945 tyrosine recombinase XerC low > 86
Mycobacterium tuberculosis H37Rv 0.26 Rv2925c Probable ribonuclease III Rnc (RNase III) 0.31 Rv1701 Probable integrase/recombinase — —
Methanococcus maripaludis JJ 0.25 MMJJ_RS06515 ribonuclease III 0.12 MMJJ_RS03475 tyrosine-type recombinase/integrase low > 28
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_01630 ribonuclease III 0.29 CCNA_03101 site-specific tyrosine recombinase XerD — —
Caulobacter crescentus NA1000 0.24 CCNA_01630 ribonuclease III 0.29 CCNA_03101 site-specific tyrosine recombinase XerD — —
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_1946 ribonuclease III, bacterial 0.23 Ga0059261_2764 Site-specific recombinase XerD — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_00745 ribonuclease III 0.30 CA264_19035 integrase — —
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS18760 ribonuclease III 0.32 CA265_RS02835 integrase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS01610 ribonuclease III 0.30 ABZR88_RS17800 tyrosine-type recombinase/integrase low > 71

Not shown: 16 genomes with orthologs for HP15_784 only; 5 genomes with orthologs for HP15_250 only