Conservation of cofitness between GFF3351 and GFF1789 in Hydrogenophaga sp. GW460-11-11-14-LB1

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3351 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 1.0 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.61 15
Acidovorax sp. GW101-3H11 0.69 Ac3H11_1561 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 0.51 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Variovorax sp. OAS795 0.61 ABID97_RS08390 beta-N-acetylhexosaminidase 0.49 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 91
Variovorax sp. SCN45 0.60 GFF3875 beta-N-acetylglucosaminidase (EC 3.2.1.52) 0.50 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_04367 beta-N-acetylhexosaminidase 0.44 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Paraburkholderia graminis OAS925 0.53 ABIE53_003031 beta-N-acetylhexosaminidase 0.43 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS14345 beta-hexosaminidase 0.42 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS04635 beta-N-acetylhexosaminidase 0.42 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS09685 beta-hexosaminidase 0.36 HSERO_RS00355 methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS14510 beta-N-acetylhexosaminidase 0.39 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum UW163 0.50 UW163_RS11975 beta-N-acetylhexosaminidase 0.39 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS10230 beta-N-acetylhexosaminidase 0.38 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Ralstonia solanacearum PSI07 0.50 RPSI07_RS18950 beta-N-acetylhexosaminidase 0.41 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS05290 beta-N-acetylhexosaminidase 0.39 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS14015 beta-hexosaminidase 0.37 RR42_RS20450 16S rRNA methyltransferase low > 128
Castellaniella sp019104865 MT123 0.45 ABCV34_RS06985 beta-N-acetylhexosaminidase 0.46 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Dechlorosoma suillum PS 0.41 Dsui_2465 beta-glucosidase-like glycosyl hydrolase 0.37 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB low > 51
Pseudomonas putida KT2440 0.38 PP_2145 beta-N-acetylglucosaminidase 0.31 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.52 23
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS07695 beta-N-acetylhexosaminidase 0.32 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS07695 beta-N-acetylhexosaminidase 0.32 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas stutzeri RCH2 0.38 Psest_2643 Beta-glucosidase-related glycosidases 0.32 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3281 Glycoside hydrolase, family 3, N-terminal 0.30 Psyr_0017 16S rRNA m(5)C-967 methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3281 Glycoside hydrolase, family 3, N-terminal 0.30 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_3912 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 0.31 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_00455 beta-hexosaminidase 0.31 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_4031 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 0.31 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Shewanella loihica PV-4 0.38 Shew_1626 beta-hexosaminidase (RefSeq) 0.30 Shew_3738 sun protein (RefSeq) low > 60
Pseudomonas simiae WCS417 0.37 PS417_07620 beta-hexosaminidase 0.32 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_02285 beta-hexosaminidase 0.31 AO356_11275 16S rRNA methyltransferase 0.42 21
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_2281 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 0.31 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.22 48
Shewanella sp. ANA-3 0.37 Shewana3_2293 beta-hexosaminidase (RefSeq) 0.29 Shewana3_0033 sun protein (RefSeq) low > 73
Pseudomonas sp. RS175 0.37 PFR28_01119 Beta-hexosaminidase 0.31 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Shewanella oneidensis MR-1 0.37 SO2250 nagZ beta-hexosaminidase (NCBI ptt file) 0.29 SO0030 sun sun protein (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1585 Beta-glucosidase-related glycosidases 0.32 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Acinetobacter radioresistens SK82 0.34 MPMX26_00420 Beta-hexosaminidase 0.26 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B low > 36
Shewanella amazonensis SB2B 0.34 Sama_1326 beta-hexosaminidase (RefSeq) 0.31 Sama_0041 sun protein (RefSeq) low > 62
Dickeya dadantii 3937 0.34 DDA3937_RS13050 beta-N-acetylhexosaminidase 0.34 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Pectobacterium carotovorum WPP14 0.33 HER17_RS08725 beta-N-acetylhexosaminidase 0.33 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Dickeya dianthicola 67-19 0.33 HGI48_RS13115 beta-N-acetylhexosaminidase 0.34 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Alteromonas macleodii MIT1002 0.33 MIT1002_01643 Beta-hexosaminidase 0.28 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Enterobacter asburiae PDN3 0.33 EX28DRAFT_1823 Beta-glucosidase-related glycosidases 0.34 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Dickeya dianthicola ME23 0.33 DZA65_RS13585 beta-N-acetylhexosaminidase 0.34 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pantoea sp. MT58 0.33 IAI47_11995 beta-N-acetylhexosaminidase 0.34 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Escherichia coli ECRC62 0.33 BNILDI_19195 nagZ beta-N-acetylhexosaminidase 0.33 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli BW25113 0.33 b1107 nagZ beta-hexosaminidase (NCBI) 0.33 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli ECOR27 0.33 NOLOHH_21035 nagZ beta-N-acetylhexosaminidase 0.33 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Enterobacter sp. TBS_079 0.32 MPMX20_01788 Beta-hexosaminidase 0.33 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Escherichia coli ECRC98 0.32 JDDGAC_07165 nagZ beta-N-acetylhexosaminidase 0.33 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Escherichia coli ECRC101 0.32 MCAODC_22865 nagZ beta-N-acetylhexosaminidase 0.33 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC102 0.32 NIAGMN_24325 nagZ beta-N-acetylhexosaminidase 0.33 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC100 0.32 OKFHMN_03505 nagZ beta-N-acetylhexosaminidase 0.33 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_02559 Beta-hexosaminidase 0.33 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia fergusonii Becca 0.32 EFB2_02868 Beta-hexosaminidase 0.34 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli BL21 0.32 ECD_01103 beta N-acetyl-glucosaminidase 0.33 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC99 0.32 KEDOAH_24250 nagZ beta-N-acetylhexosaminidase 0.33 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR38 0.32 HEPCGN_23980 nagZ beta-N-acetylhexosaminidase 0.34 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Erwinia tracheiphila SCR3 0.32 LU632_RS14755 nagZ beta-N-acetylhexosaminidase 0.33 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Escherichia coli Nissle 1917 0.32 ECOLIN_RS06390 beta-N-acetylhexosaminidase 0.34 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 55
Rahnella sp. WP5 0.32 EX31_RS24500 beta-N-acetylhexosaminidase 0.31 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Klebsiella michiganensis M5al 0.31 BWI76_RS11165 beta-N-acetylhexosaminidase 0.34 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Serratia liquefaciens MT49 0.31 IAI46_09900 beta-N-acetylhexosaminidase 0.33 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_03620 beta-hexosaminidase 0.35 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3390 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 0.33 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Rhodanobacter denitrificans MT42 0.30 LRK55_RS16725 beta-N-acetylhexosaminidase 0.28 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS17010 beta-N-acetylhexosaminidase 0.29 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.3663.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) 0.27 Xcc-8004.4741.1 hypothetical protein low > 74
Lysobacter sp. OAE881 0.28 ABIE51_RS13815 beta-N-acetylhexosaminidase 0.31 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Agrobacterium fabrum C58 0.19 Atu1709 glycosyl hydrolase 0.18 Atu2825 Sun protein low > 89
Rhizobium sp. OAE497 0.18 ABIE40_RS08445 beta-N-acetylhexosaminidase 0.20 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Rhodospirillum rubrum S1H 0.18 Rru_A1777 Beta-N-acetylhexosaminidase (NCBI) 0.15 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.18 PGA1_c11160 putative beta-hexosaminidase 0.17 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B low > 62
Sinorhizobium meliloti 1021 0.18 SMc02071 hydrolase glycosidase 0.19 SMc04090 sun protein low > 103
Rhodopseudomonas palustris CGA009 0.17 TX73_014770 beta-N-acetylhexosaminidase 0.20 TX73_000155 transcription antitermination factor NusB low > 86
Dinoroseobacter shibae DFL-12 0.14 Dshi_1726 Beta-N-acetylhexosaminidase (RefSeq) 0.18 Dshi_3033 Fmu (Sun) domain protein (RefSeq) low > 64

Not shown: 4 genomes with orthologs for GFF3351 only; 7 genomes with orthologs for GFF1789 only