Conservation of cofitness between PGA1_c00030 and PGA1_c15260 in Phaeobacter inhibens DSM 17395

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c00030 DNA replication and repair protein RecF 1.0 PGA1_c15260 protein recA (recombinase A) 0.54 8
Dinoroseobacter shibae DFL-12 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.81 Dshi_1643 recA protein (RefSeq) 0.62 14
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03285 DNA replication and repair protein RecF 0.72 AMB_RS03205 DNA recombination/repair protein RecA — —
Azospirillum sp. SherDot2 0.39 MPMX19_02716 DNA replication and repair protein RecF 0.74 MPMX19_00869 Protein RecA — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00200 DNA replication/repair protein RecF 0.74 ABIE40_RS10320 recombinase RecA low > 107
Agrobacterium fabrum C58 0.37 Atu0073 recF-like protein 0.74 Atu1874 RecA protein 0.64 3
Sinorhizobium meliloti 1021 0.36 SMc02863 recombination protein F 0.74 SMc00760 recombinase A 0.59 13
Azospirillum brasilense Sp245 0.35 AZOBR_RS17670 recombinase RecF 0.73 AZOBR_RS11095 recombinase RecA 0.35 95
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2727 DNA replication and repair protein RecF 0.72 Ga0059261_0204 protein RecA — —
Bosea sp. OAE506 0.34 ABIE41_RS04170 DNA replication/repair protein RecF 0.70 ABIE41_RS13335 recombinase RecA 0.67 1
Rhodopseudomonas palustris CGA009 0.33 TX73_000015 DNA replication/repair protein RecF 0.72 TX73_019940 recombinase RecA — —
Caulobacter crescentus NA1000 0.33 CCNA_00158 DNA replication and repair protein recF 0.67 CCNA_01141 RecA protein 0.73 13
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00158 DNA replication and repair protein recF 0.67 CCNA_01141 RecA protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15360 DNA replication/repair protein RecF 0.71 A4249_RS12615 recombinase RecA low > 48
Rhodospirillum rubrum S1H 0.31 Rru_A0003 RecF protein (NCBI) 0.74 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.60 CA265_RS00600 recombinase RecA 0.71 12
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.64 ABZR86_RS00660 recombinase RecA 0.64 14
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.60 ABZR88_RS16740 recombinase RecA low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.59 Echvi_0044 protein RecA 0.50 23
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.59 HMPREF1058_RS15965 recombinase RecA 0.70 20
Dickeya dianthicola 67-19 0.14 HGI48_RS00015 DNA replication/repair protein RecF 0.64 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS00015 DNA replication/repair protein RecF 0.64 DZA65_RS17450 recombinase RecA — —
Fusobacterium nucleatum SB010 0.14 HUW76_00025 DNA replication/repair protein RecF 0.52 HUW76_07355 recombinase RecA — —
Lysobacter sp. OAE881 0.14 ABIE51_RS00765 DNA replication/repair protein RecF 0.66 ABIE51_RS07800 recombinase RecA low > 62
Serratia liquefaciens MT49 0.14 IAI46_00015 DNA replication/repair protein RecF 0.64 IAI46_03840 recombinase RecA 0.69 16
Pantoea sp. MT58 0.14 IAI47_00015 DNA replication/repair protein RecF 0.65 IAI47_04300 recombinase RecA 0.58 1
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.57 HMPREF1078_RS00095 recombinase RecA low > 61
Dickeya dadantii 3937 0.14 DDA3937_RS21285 DNA replication/repair protein RecF 0.64 DDA3937_RS16245 recombinase RecA low > 74
Rhodanobacter denitrificans MT42 0.14 LRK55_RS08240 DNA replication/repair protein RecF 0.66 LRK55_RS14695 recombinase RecA low > 63
Shewanella sp. ANA-3 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.65 Shewana3_1126 recA recombinase A (RefSeq) 0.86 3
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08475 DNA replication/repair protein RecF 0.66 LRK54_RS14980 recombinase RecA 0.40 3
Shewanella oneidensis MR-1 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.65 SO3430 recA recA protein (NCBI ptt file) 0.54 4
Pectobacterium carotovorum WPP14 0.13 HER17_RS00015 DNA replication/repair protein RecF 0.64 HER17_RS05045 recombinase RecA 0.69 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.64 CA264_19695 DNA recombination/repair protein RecA — —
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13135 DNA replication and repair protein RecF 0.59 ABI39_RS11930 recombinase RecA low > 72
Marinobacter adhaerens HP15 0.13 HP15_3705 DNA replication and repair protein recF 0.68 HP15_1048 recombinase A 0.40 25
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.58 HMPREF1181_RS11910 recombinase RecA low > 56
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.58 BT4610 RecA (NCBI ptt file) low > 81
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.65 CSW01_02875 DNA recombination/repair protein RecA low > 62
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF 0.66 OKGIIK_03740 recA recombinase RecA low > 52
Shewanella loihica PV-4 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.65 Shew_1215 recA recombinase A (RefSeq) low > 60
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05088 DNA replication and repair protein RecF 0.57 BACOVA_05402 RecA protein low > 94
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1756 DNA recombination and repair protein RecF 0.65 GFF4693 RecA protein — —
Erwinia tracheiphila SCR3 0.12 LU632_RS00015 recF DNA replication/repair protein RecF 0.66 LU632_RS15735 recA recombinase RecA low > 74
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF 0.64 EX28DRAFT_2785 protein RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF 0.64 OHPLBJKB_01035 Protein RecA low > 73
Escherichia coli ECRC62 0.12 BNILDI_04365 recF DNA replication/repair protein RecF 0.64 BNILDI_11105 recA recombinase RecA — —
Escherichia coli BL21 0.12 ECD_03583 gap repair protein 0.64 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 60
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.64 JDDGAC_24370 recA recombinase RecA — —
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.64 EFB2_01225 Protein RecA low > 86
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.64 NOLOHH_12545 recA recombinase RecA — —
Escherichia coli ECRC101 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.64 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.64 MCAODC_11230 recA recombinase RecA — —
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.64 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli BW25113 0.12 b3700 recF recombination protein F (NCBI) 0.64 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.64 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.64 NIAGMN_18475 recA recombinase RecA — —
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_10480 recombinase RecF 0.65 AO353_16805 recombinase RecA 0.33 83
Escherichia coli ECOR38 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF 0.64 HEPCGN_19900 recA recombinase RecA low > 85
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.66 PFLU_RS05885 recombinase RecA low > 109
Enterobacter sp. TBS_079 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.64 MPMX20_03580 Protein RecA 0.44 8
Pseudomonas fluorescens SBW25 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.66 PFLU_RS05885 recombinase RecA low > 109
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.64 Xcc-8004.3111.1 RecA protein — —
Pseudomonas simiae WCS417 0.12 PS417_00015 recombinase RecF 0.66 PS417_05815 recombinase RecA 0.43 7
Klebsiella michiganensis M5al 0.12 BWI76_RS00010 DNA replication and repair protein RecF 0.64 BWI76_RS22180 recombinase RecA — —
Rahnella sp. WP5 0.12 EX31_RS05975 DNA replication/repair protein RecF 0.64 EX31_RS07800 recombinase RecA low > 89
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.66 Pf1N1B4_5514 RecA protein low > 87
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.65 PfGW456L13_4668 RecA protein low > 87
Shewanella amazonensis SB2B 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.64 Sama_1046 recA recombinase A (RefSeq) 0.65 10
Acinetobacter radioresistens SK82 0.12 MPMX26_00003 DNA replication and repair protein RecF 0.66 MPMX26_01308 Protein RecA low > 36
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_11635 recombinase RecF 0.65 AO356_05670 recombinase RecA 0.45 20
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.65 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. RS175 0.11 PFR28_04593 DNA replication and repair protein RecF 0.65 PFR28_00472 Protein RecA low > 88
Alteromonas macleodii MIT1002 0.11 MIT1002_00003 DNA replication and repair protein RecF 0.68 MIT1002_00955 Recombinase A low > 70
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_2250 recF recombination protein F 0.57 Synpcc7942_0348 recA recombinase A — —
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_0003 DNA replication and repair protein RecF 0.65 Psyr_1378 RecA protein 0.25 52
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_0003 DNA replication and repair protein RecF 0.65 Psyr_1378 RecA protein 0.49 12
Pseudomonas sp. S08-1 0.11 OH686_12620 DNA recombination and repair protein RecF 0.66 OH686_18205 protein RecA low > 80
Pseudomonas putida KT2440 0.11 PP_0012 DNA replication and repair protein 0.66 PP_1629 Protein RecA 0.21 19
Kangiella aquimarina DSM 16071 0.10 B158DRAFT_0366 DNA replication and repair protein RecF 0.67 B158DRAFT_1531 protein RecA 0.69 8
Bifidobacterium breve UCC2003 0.09 BBR_RS10265 DNA replication and repair protein RecF 0.63 BBR_RS16530 recombinase RecA 0.90 2
Pseudomonas stutzeri RCH2 0.09 Psest_0004 recF protein 0.66 Psest_2872 protein RecA 0.34 15

Not shown: 1 genomes with orthologs for PGA1_c00030 only; 19 genomes with orthologs for PGA1_c15260 only