Conservation of cofitness between PGA1_c00030 and PGA1_c14060 in Phaeobacter inhibens DSM 17395

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c00030 DNA replication and repair protein RecF 1.0 PGA1_c14060 tyrosine recombinase XerD 0.49 13
Dinoroseobacter shibae DFL-12 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.65 Dshi_1611 integrase family protein (RefSeq) 0.70 10
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03285 DNA replication and repair protein RecF 0.38 AMB_RS19880 site-specific tyrosine recombinase XerD — —
Azospirillum sp. SherDot2 0.39 MPMX19_02716 DNA replication and repair protein RecF 0.40 MPMX19_02643 Tyrosine recombinase XerD — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00200 DNA replication/repair protein RecF 0.39 ABIE40_RS17685 site-specific tyrosine recombinase XerD low > 107
Agrobacterium fabrum C58 0.37 Atu0073 recF-like protein 0.40 Atu3629 site-specific tyrosine recombinase XerD — —
Sinorhizobium meliloti 1021 0.36 SMc02863 recombination protein F 0.40 SMc00691 site-specific tyrosine recombinase XerD 0.50 18
Azospirillum brasilense Sp245 0.35 AZOBR_RS17670 recombinase RecF 0.41 AZOBR_RS03240 recombinase XerD low > 97
Bosea sp. OAE506 0.34 ABIE41_RS04170 DNA replication/repair protein RecF 0.38 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.50 24
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2727 DNA replication and repair protein RecF 0.32 Ga0059261_3595 Site-specific recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.33 TX73_000015 DNA replication/repair protein RecF 0.41 TX73_002625 site-specific tyrosine recombinase XerD low > 86
Caulobacter crescentus NA1000 0.33 CCNA_00158 DNA replication and repair protein recF 0.39 CCNA_03101 site-specific tyrosine recombinase XerD 0.63 18
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00158 DNA replication and repair protein recF 0.39 CCNA_03101 site-specific tyrosine recombinase XerD low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15360 DNA replication/repair protein RecF 0.37 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Rhodospirillum rubrum S1H 0.31 Rru_A0003 RecF protein (NCBI) 0.39 Rru_A3738 Phage integrase (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.24 CA265_RS09520 site-specific tyrosine recombinase XerD 0.40 28
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.27 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.66 11
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.25 ABZR88_RS10220 site-specific tyrosine recombinase XerD low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.24 Echvi_1809 tyrosine recombinase XerD low > 79
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.24 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD low > 67
Dickeya dianthicola ME23 0.14 DZA65_RS00015 DNA replication/repair protein RecF 0.30 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Fusobacterium nucleatum SB010 0.14 HUW76_00025 DNA replication/repair protein RecF 0.14 HUW76_06795 tyrosine-type recombinase/integrase — —
Dickeya dianthicola 67-19 0.14 HGI48_RS00015 DNA replication/repair protein RecF 0.30 HGI48_RS03440 site-specific tyrosine recombinase XerD low > 71
Lysobacter sp. OAE881 0.14 ABIE51_RS00765 DNA replication/repair protein RecF 0.28 ABIE51_RS04495 site-specific tyrosine recombinase XerD low > 62
Serratia liquefaciens MT49 0.14 IAI46_00015 DNA replication/repair protein RecF 0.30 IAI46_20730 site-specific tyrosine recombinase XerD low > 86
Pantoea sp. MT58 0.14 IAI47_00015 DNA replication/repair protein RecF 0.30 IAI47_03820 site-specific tyrosine recombinase XerD 0.33 48
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.26 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD low > 61
Dickeya dadantii 3937 0.14 DDA3937_RS21285 DNA replication/repair protein RecF 0.30 DDA3937_RS03300 site-specific tyrosine recombinase XerD low > 74
Shewanella sp. ANA-3 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.27 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.14 LRK55_RS08240 DNA replication/repair protein RecF 0.27 LRK55_RS04515 site-specific tyrosine recombinase XerD low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08475 DNA replication/repair protein RecF 0.27 LRK54_RS04735 site-specific tyrosine recombinase XerD low > 59
Shewanella oneidensis MR-1 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.29 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.41 18
Pectobacterium carotovorum WPP14 0.13 HER17_RS00015 DNA replication/repair protein RecF 0.29 HER17_RS17890 site-specific tyrosine recombinase XerD 0.64 13
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.23 CA264_00850 site-specific tyrosine recombinase XerD — —
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13135 DNA replication and repair protein RecF 0.24 ABI39_RS07000 site-specific tyrosine recombinase XerD low > 72
Marinobacter adhaerens HP15 0.13 HP15_3705 DNA replication and repair protein recF 0.26 HP15_762 site-specific tyrosine recombinase XerD low > 73
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.26 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD low > 56
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.26 BT2843 integrase (NCBI ptt file) low > 81
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.29 CSW01_12250 site-specific tyrosine recombinase XerD low > 62
Shewanella loihica PV-4 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.27 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.42 49
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF 0.29 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD low > 52
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05088 DNA replication and repair protein RecF 0.27 BACOVA_02123 tyrosine recombinase XerD low > 94
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1756 DNA recombination and repair protein RecF 0.33 GFF2991 Tyrosine recombinase XerD low > 78
Erwinia tracheiphila SCR3 0.12 LU632_RS00015 recF DNA replication/repair protein RecF 0.29 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF 0.32 EX28DRAFT_2945 tyrosine recombinase XerD low > 76
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.32 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BL21 0.12 ECD_03583 gap repair protein 0.32 ECD_02726 site-specific tyrosine recombinase 0.62 33
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF 0.32 OHPLBJKB_00821 Tyrosine recombinase XerD low > 73
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.32 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.32 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.32 EFB2_01007 Tyrosine recombinase XerD low > 86
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.32 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC101 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.32 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BW25113 0.12 b3700 recF recombination protein F (NCBI) 0.32 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) low > 76
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.32 ECOLIN_RS16125 site-specific tyrosine recombinase XerD 0.84 4
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.32 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.12 BNILDI_04365 recF DNA replication/repair protein RecF 0.32 BNILDI_10025 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR38 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF 0.32 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD low > 85
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_10480 recombinase RecF 0.26 AO353_04365 recombinase XerD 0.43 31
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.27 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.29 9
Pseudomonas fluorescens SBW25 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.27 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Enterobacter sp. TBS_079 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.31 MPMX20_03753 Tyrosine recombinase XerD 0.44 7
Pseudomonas simiae WCS417 0.12 PS417_00015 recombinase RecF 0.27 PS417_22895 tyrosine recombinase XerD 0.38 9
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.27 Xcc-8004.4441.1 Tyrosine recombinase XerD low > 74
Klebsiella michiganensis M5al 0.12 BWI76_RS00010 DNA replication and repair protein RecF 0.31 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Rahnella sp. WP5 0.12 EX31_RS05975 DNA replication/repair protein RecF 0.29 EX31_RS13480 site-specific tyrosine recombinase XerD low > 89
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.26 Pf1N1B4_3011 Tyrosine recombinase XerD low > 87
Shewanella amazonensis SB2B 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.28 Sama_2739 integrase/recombinase XerD (RefSeq) 0.35 42
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.26 PfGW456L13_1721 Tyrosine recombinase XerD 0.22 78
Acinetobacter radioresistens SK82 0.12 MPMX26_00003 DNA replication and repair protein RecF 0.25 MPMX26_00169 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_11635 recombinase RecF 0.26 AO356_06385 recombinase XerD 0.43 21
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.26 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas sp. RS175 0.11 PFR28_04593 DNA replication and repair protein RecF 0.27 PFR28_00331 Tyrosine recombinase XerD 0.50 9
Alteromonas macleodii MIT1002 0.11 MIT1002_00003 DNA replication and repair protein RecF 0.26 MIT1002_00786 Tyrosine recombinase XerD low > 70
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_0003 DNA replication and repair protein RecF 0.26 Psyr_1286 tyrosine recombinase XerD subunit 0.34 15
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_0003 DNA replication and repair protein RecF 0.26 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas sp. S08-1 0.11 OH686_12620 DNA recombination and repair protein RecF 0.28 OH686_17750 tyrosine recombinase XerD low > 80
Pseudomonas putida KT2440 0.11 PP_0012 DNA replication and repair protein 0.27 PP_1468 Tyrosine recombinase XerD 0.16 95
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.23 Rv1701 Probable integrase/recombinase low > 58
Kangiella aquimarina DSM 16071 0.10 B158DRAFT_0366 DNA replication and repair protein RecF 0.27 B158DRAFT_2265 tyrosine recombinase XerD low > 40
Pseudomonas stutzeri RCH2 0.09 Psest_0004 recF protein 0.25 Psest_3129 tyrosine recombinase XerD 0.18 44
Bifidobacterium breve UCC2003 0.09 BBR_RS10265 DNA replication and repair protein RecF 0.27 BBR_RS16755 site-specific tyrosine recombinase XerD low > 34

Not shown: 1 genomes with orthologs for PGA1_c00030 only; 19 genomes with orthologs for PGA1_c14060 only