Conservation of cofitness between PGA1_c00030 and PGA1_c11070 in Phaeobacter inhibens DSM 17395

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c00030 DNA replication and repair protein RecF 1.0 PGA1_c11070 exodeoxyribonuclease III 0.36 20
Dinoroseobacter shibae DFL-12 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.74 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03285 DNA replication and repair protein RecF 0.54 AMB_RS12755 exodeoxyribonuclease III — —
Azospirillum sp. SherDot2 0.39 MPMX19_02716 DNA replication and repair protein RecF 0.54 MPMX19_04331 Exodeoxyribonuclease — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00200 DNA replication/repair protein RecF 0.57 ABIE40_RS08420 exodeoxyribonuclease III low > 107
Agrobacterium fabrum C58 0.37 Atu0073 recF-like protein 0.55 Atu1714 exonuclease III low > 89
Sinorhizobium meliloti 1021 0.36 SMc02863 recombination protein F 0.54 SMc02077 exodeoxyribonuclease III protein 0.37 21
Azospirillum brasilense Sp245 0.35 AZOBR_RS17670 recombinase RecF 0.52 AZOBR_RS15540 exodeoxyribonuclease III 0.53 10
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2727 DNA replication and repair protein RecF 0.49 Ga0059261_3499 exodeoxyribonuclease III — —
Bosea sp. OAE506 0.34 ABIE41_RS04170 DNA replication/repair protein RecF 0.55 ABIE41_RS15705 exodeoxyribonuclease III 0.61 8
Rhodopseudomonas palustris CGA009 0.33 TX73_000015 DNA replication/repair protein RecF 0.58 TX73_014820 exodeoxyribonuclease III low > 86
Caulobacter crescentus NA1000 0.33 CCNA_00158 DNA replication and repair protein recF 0.55 CCNA_02090 exodeoxyribonuclease III low > 66
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00158 DNA replication and repair protein recF 0.55 CCNA_02090 exodeoxyribonuclease III — —
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15360 DNA replication/repair protein RecF 0.57 A4249_RS02655 exodeoxyribonuclease III low > 48
Rhodospirillum rubrum S1H 0.31 Rru_A0003 RecF protein (NCBI) 0.49 Rru_A1784 exodeoxyribonuclease III xth (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.47 CA265_RS16670 exodeoxyribonuclease III 0.21 82
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.33 ABZR86_RS14930 exodeoxyribonuclease III low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.49 ABZR88_RS19760 exodeoxyribonuclease III low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.24 Echvi_1056 exodeoxyribonuclease III low > 79
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.19 HMPREF1058_RS17100 exodeoxyribonuclease III low > 67
Lysobacter sp. OAE881 0.14 ABIE51_RS00765 DNA replication/repair protein RecF 0.45 ABIE51_RS09210 exodeoxyribonuclease III low > 62
Dickeya dianthicola 67-19 0.14 HGI48_RS00015 DNA replication/repair protein RecF 0.25 HGI48_RS10320 exodeoxyribonuclease III low > 71
Fusobacterium nucleatum SB010 0.14 HUW76_00025 DNA replication/repair protein RecF 0.18 HUW76_10435 exodeoxyribonuclease III — —
Dickeya dianthicola ME23 0.14 DZA65_RS00015 DNA replication/repair protein RecF 0.26 DZA65_RS10795 exodeoxyribonuclease III low > 75
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.22 HMPREF1078_RS00480 exodeoxyribonuclease III low > 61
Pantoea sp. MT58 0.14 IAI47_00015 DNA replication/repair protein RecF 0.25 IAI47_08990 exodeoxyribonuclease III low > 76
Serratia liquefaciens MT49 0.14 IAI46_00015 DNA replication/repair protein RecF 0.27 IAI46_14290 exodeoxyribonuclease III low > 86
Dickeya dadantii 3937 0.14 DDA3937_RS21285 DNA replication/repair protein RecF 0.25 DDA3937_RS10310 exodeoxyribonuclease III low > 74
Rhodanobacter denitrificans MT42 0.14 LRK55_RS08240 DNA replication/repair protein RecF 0.32 LRK55_RS08390 exodeoxyribonuclease III low > 63
Shewanella sp. ANA-3 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.25 Shewana3_1503 exonuclease III (RefSeq) low > 73
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08475 DNA replication/repair protein RecF 0.32 LRK54_RS08625 exodeoxyribonuclease III low > 59
Shewanella oneidensis MR-1 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.25 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.32 34
Pectobacterium carotovorum WPP14 0.13 HER17_RS00015 DNA replication/repair protein RecF 0.26 HER17_RS11085 exodeoxyribonuclease III 0.60 30
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.26 CA264_17265 exodeoxyribonuclease III low > 74
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13135 DNA replication and repair protein RecF 0.19 ABI39_RS13020 exodeoxyribonuclease III 0.36 47
Marinobacter adhaerens HP15 0.13 HP15_3705 DNA replication and repair protein recF 0.24 HP15_1776 exonuclease III low > 73
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.25 HMPREF1181_RS16605 exodeoxyribonuclease III low > 56
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.23 BT0630 exodeoxyribonuclease (NCBI ptt file) low > 81
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.29 CSW01_09315 exodeoxyribonuclease III low > 62
Shewanella loihica PV-4 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.28 Shew_2262 exonuclease III (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF 0.34 OKGIIK_15390 xth exodeoxyribonuclease III low > 52
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05088 DNA replication and repair protein RecF 0.23 BACOVA_02252 exodeoxyribonuclease III low > 94
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1756 DNA recombination and repair protein RecF 0.26 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.71 3
Erwinia tracheiphila SCR3 0.12 LU632_RS00015 recF DNA replication/repair protein RecF 0.25 LU632_RS12950 xthA exodeoxyribonuclease III low > 74
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF 0.27 EX28DRAFT_1753 exodeoxyribonuclease III low > 76
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.28 JDDGAC_01475 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC62 0.12 BNILDI_04365 recF DNA replication/repair protein RecF 0.28 BNILDI_16200 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC101 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.28 OKFHMN_26900 xthA exodeoxyribonuclease III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF 0.28 OHPLBJKB_01983 Exodeoxyribonuclease III low > 73
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.28 MCAODC_18510 xthA exodeoxyribonuclease III — —
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.28 NOLOHH_17415 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.28 NIAGMN_01165 xthA exodeoxyribonuclease III — —
Escherichia coli BL21 0.12 ECD_03583 gap repair protein 0.28 ECD_01718 exonuclease III — —
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.28 KEDOAH_01210 xthA exodeoxyribonuclease III — —
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.28 ECOLIN_RS09750 exodeoxyribonuclease III low > 52
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.28 EFB2_02244 Exodeoxyribonuclease III low > 86
Escherichia coli BW25113 0.12 b3700 recF recombination protein F (NCBI) 0.28 b1749 xthA exonuclease III (NCBI) 0.25 56
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_10480 recombinase RecF 0.22 AO353_27875 exonuclease III low > 101
Escherichia coli ECOR38 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF 0.27 HEPCGN_05265 xthA exodeoxyribonuclease III low > 85
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.24 PFLU_RS18930 exodeoxyribonuclease III low > 109
Enterobacter sp. TBS_079 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.28 MPMX20_01864 Exodeoxyribonuclease III low > 85
Pseudomonas fluorescens SBW25 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.24 PFLU_RS18930 exodeoxyribonuclease III low > 109
Klebsiella michiganensis M5al 0.12 BWI76_RS00010 DNA replication and repair protein RecF 0.28 BWI76_RS11665 exodeoxyribonuclease III low > 92
Pseudomonas simiae WCS417 0.12 PS417_00015 recombinase RecF 0.24 PS417_16980 exonuclease III low > 88
Rahnella sp. WP5 0.12 EX31_RS05975 DNA replication/repair protein RecF 0.27 EX31_RS06330 exodeoxyribonuclease III low > 89
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.44 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.43 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Shewanella amazonensis SB2B 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.22 Sama_2139 exodeoxyribonuclease III (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.43 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) low > 103
Acinetobacter radioresistens SK82 0.12 MPMX26_00003 DNA replication and repair protein RecF 0.17 MPMX26_02938 Exodeoxyribonuclease low > 36
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_11635 recombinase RecF 0.43 AO356_01850 exodeoxyribonuclease III low > 104
Pseudomonas sp. RS175 0.11 PFR28_04593 DNA replication and repair protein RecF 0.43 PFR28_01207 Exodeoxyribonuclease III low > 88
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_2250 recF recombination protein F 0.34 Synpcc7942_2607 xthA Exodeoxyribonuclease III low > 38
Alteromonas macleodii MIT1002 0.11 MIT1002_00003 DNA replication and repair protein RecF 0.25 MIT1002_01652 Exodeoxyribonuclease III low > 70
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_0003 DNA replication and repair protein RecF 0.25 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_0003 DNA replication and repair protein RecF 0.25 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas sp. S08-1 0.11 OH686_12620 DNA recombination and repair protein RecF 0.44 OH686_23775 exodeoxyribonuclease III low > 80
Pseudomonas putida KT2440 0.11 PP_0012 DNA replication and repair protein 0.42 PP_2707 putative Exodeoxyribonuclease III low > 96
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.28 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) low > 58
Kangiella aquimarina DSM 16071 0.10 B158DRAFT_0366 DNA replication and repair protein RecF 0.24 B158DRAFT_1291 exodeoxyribonuclease III low > 40
Pseudomonas stutzeri RCH2 0.09 Psest_0004 recF protein 0.46 Psest_1187 exodeoxyribonuclease III low > 67
Bifidobacterium breve UCC2003 0.09 BBR_RS10265 DNA replication and repair protein RecF 0.16 BBR_RS16630 exodeoxyribonuclease III low > 34

Not shown: 1 genomes with orthologs for PGA1_c00030 only; 21 genomes with orthologs for PGA1_c11070 only