Conservation of cofitness between EX31_RS21480 and EX31_RS22700 in Rahnella sp. WP5

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase 1.0 EX31_RS22700 uracil phosphoribosyltransferase 0.48 16
Pectobacterium carotovorum WPP14 0.69 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase 0.94 HER17_RS15460 uracil phosphoribosyltransferase low > 75
Serratia liquefaciens MT49 0.65 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase 0.96 IAI46_18880 uracil phosphoribosyltransferase low > 86
Dickeya dadantii 3937 0.63 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase 0.92 DDA3937_RS06030 uracil phosphoribosyltransferase low > 74
Escherichia coli Nissle 1917 0.62 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase 0.94 ECOLIN_RS14185 uracil phosphoribosyltransferase 0.53 46
Dickeya dianthicola 67-19 0.62 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase 0.93 HGI48_RS06075 uracil phosphoribosyltransferase low > 71
Escherichia coli ECOR38 0.62 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 HEPCGN_20980 upp uracil phosphoribosyltransferase low > 87
Escherichia coli ECRC62 0.62 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 BNILDI_12275 upp uracil phosphoribosyltransferase low > 75
Escherichia coli ECRC100 0.62 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 OKFHMN_21815 upp uracil phosphoribosyltransferase low > 80
Escherichia fergusonii Becca 0.62 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase 0.94 EFB2_01400 Uracil phosphoribosyltransferase low > 86
Escherichia coli ECRC102 0.62 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 NIAGMN_19585 upp uracil phosphoribosyltransferase — —
Escherichia coli ECRC101 0.62 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 MCAODC_12345 upp uracil phosphoribosyltransferase low > 87
Escherichia coli ECRC98 0.62 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 JDDGAC_25760 upp uracil phosphoribosyltransferase low > 86
Escherichia coli ECRC99 0.62 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 KEDOAH_06405 upp uracil phosphoribosyltransferase — —
Escherichia coli ECOR27 0.62 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.94 NOLOHH_13465 upp uracil phosphoribosyltransferase low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase 0.95 MPMX20_03352 Uracil phosphoribosyltransferase low > 85
Klebsiella michiganensis M5al 0.60 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase 0.95 BWI76_RS20945 uracil phosphoribosyltransferase low > 92
Escherichia coli BW25113 0.60 b2912 ygfA putative ligase (VIMSS) 0.94 b2498 upp uracil phosphoribosyltransferase (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase 0.94 OHPLBJKB_01228 Uracil phosphoribosyltransferase 0.60 30
Escherichia coli BL21 0.60 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein 0.94 ECD_02390 uracil phosphoribosyltransferase low > 61
Dickeya dianthicola ME23 0.59 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase 0.92 DZA65_RS06425 uracil phosphoribosyltransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.95 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 78
Pantoea sp. MT58 0.56 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase 0.97 IAI47_05185 uracil phosphoribosyltransferase low > 76
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase 0.94 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) low > 76
Erwinia tracheiphila SCR3 0.53 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase 0.95 LU632_RS08280 upp uracil phosphoribosyltransferase — —
Shewanella loihica PV-4 0.52 Shew_3069 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.90 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.51 SO0774 5-formyltetrahydrofolate cyclo-ligase family protein (NCBI ptt file) 0.89 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase 0.91 CSW01_11345 uracil phosphoribosyltransferase low > 62
Shewanella sp. ANA-3 0.50 Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.90 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.41 Sama_2726 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) 0.88 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) low > 62
Pseudomonas stutzeri RCH2 0.31 Psest_0170 5,10-methenyltetrahydrofolate synthetase 0.73 Psest_1120 uracil phosphoribosyltransferase low > 67
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.73 Psyr_0969 uracil phosphoribosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.73 Psyr_0969 uracil phosphoribosyltransferase low > 86
Pseudomonas simiae WCS417 0.28 PS417_27305 5-formyltetrahydrofolate cyclo-ligase 0.73 PS417_04435 uracil phosphoribosyltransferase low > 88
Marinobacter adhaerens HP15 0.28 HP15_3211 5-formyltetrahydrofolate cyclo-ligase 0.71 HP15_2306 uracil phosphoribosyltransferase low > 73
Pseudomonas fluorescens SBW25 0.27 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.73 PFLU_RS04485 uracil phosphoribosyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.73 PFLU_RS04485 uracil phosphoribosyltransferase low > 109
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_08780 5-formyltetrahydrofolate cyclo-ligase 0.73 AO353_14855 uracil phosphoribosyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_892 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.73 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 87
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_2225 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.73 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 87
Pseudomonas putida KT2440 0.25 PP_5203 5-formyltetrahydrofolate cyclo-ligase 0.71 PP_0746 Uracil phosphoribosyltransferase low > 96
Pseudomonas sp. RS175 0.25 PFR28_04325 5-formyltetrahydrofolate cyclo-ligase 0.72 PFR28_03641 Uracil phosphoribosyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.72 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 103
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_12990 5-formyltetrahydrofolate cyclo-ligase 0.72 AO356_16565 uracil phosphoribosyltransferase low > 104
Sinorhizobium meliloti 1021 0.24 SMc03974 hypothetical protein 0.54 SMc04121 uracil phosphoribosyltransferase low > 103
Acinetobacter radioresistens SK82 0.24 MPMX26_02298 5-formyltetrahydrofolate cyclo-ligase 0.67 MPMX26_02542 Uracil phosphoribosyltransferase low > 36
Pseudomonas sp. S08-1 0.24 OH686_11225 5-formyltetrahydrofolate cyclo-ligase 0.72 OH686_17985 uracil phosphoribosyltransferase low > 80
Lysobacter sp. OAE881 0.23 ABIE51_RS17355 5-formyltetrahydrofolate cyclo-ligase 0.74 ABIE51_RS15050 uracil phosphoribosyltransferase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.1138.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.71 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) low > 74
Rhizobium sp. OAE497 0.23 ABIE40_RS15645 5-formyltetrahydrofolate cyclo-ligase 0.55 ABIE40_RS00825 uracil phosphoribosyltransferase low > 107
Agrobacterium fabrum C58 0.22 Atu3731 5-formyltetrahydrofolate cyclo-ligase 0.53 Atu0135 uracil phosphoribosyltransferase low > 89
Rhodospirillum rubrum S1H 0.22 Rru_A1084 5-formyltetrahydrofolate cyclo-ligase (NCBI) 0.46 Rru_A2255 Uracil phosphoribosyl transferase (NCBI) low > 58
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_12225 5-formyltetrahydrofolate cyclo-ligase 0.70 OKGIIK_10040 upp uracil phosphoribosyltransferase low > 52
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS06170 5-formyltetrahydrofolate cyclo-ligase 0.21 HMPREF1181_RS01165 uracil phosphoribosyltransferase low > 56
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS14635 5-formyltetrahydrofolate cyclo-ligase 0.22 HMPREF1078_RS00655 uracil phosphoribosyltransferase low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_15880 5-formyltetrahydrofolate cyclo-ligase 0.25 CA264_14760 uracil phosphoribosyltransferase low > 74
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.52 CCNA_02351 uracil phosphoribosyltransferase low > 67
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS11670 5-formyltetrahydrofolate cyclo-ligase 0.73 LRK54_RS03170 uracil phosphoribosyltransferase low > 59
Caulobacter crescentus NA1000 0.19 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.52 CCNA_02351 uracil phosphoribosyltransferase low > 66
Rhodanobacter denitrificans MT42 0.19 LRK55_RS11395 5-formyltetrahydrofolate cyclo-ligase 0.73 LRK55_RS02920 uracil phosphoribosyltransferase low > 63
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS13145 5-formyltetrahydrofolate cyclo-ligase 0.22 ABI39_RS06680 uracil phosphoribosyltransferase low > 72
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_2318 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.71 DvMF_0911 uracil phosphoribosyltransferase (RefSeq) low > 51
Phocaeicola vulgatus CL09T03C04 0.18 HMPREF1058_RS17145 5-formyltetrahydrofolate cyclo-ligase 0.22 HMPREF1058_RS10070 uracil phosphoribosyltransferase low > 67
Azospirillum brasilense Sp245 0.18 AZOBR_RS09025 5-formyltetrahydrofolate cyclo-ligase 0.46 AZOBR_RS03150 uracil phosphoribosyltransferase low > 97
Herbaspirillum seropedicae SmR1 0.17 HSERO_RS21420 5-formyltetrahydrofolate cyclo-ligase 0.46 HSERO_RS03500 uracil phosphoribosyltransferase low > 78
Dyella japonica UNC79MFTsu3.2 0.16 ABZR86_RS11995 5-formyltetrahydrofolate cyclo-ligase 0.72 ABZR86_RS09615 uracil phosphoribosyltransferase low > 74
Bosea sp. OAE506 0.16 ABIE41_RS09445 5-formyltetrahydrofolate cyclo-ligase 0.53 ABIE41_RS22700 uracil phosphoribosyltransferase low > 77
Ralstonia sp. UNC404CL21Col 0.15 ABZR87_RS04880 5-formyltetrahydrofolate cyclo-ligase 0.47 ABZR87_RS15395 uracil phosphoribosyltransferase low > 80
Mycobacterium tuberculosis H37Rv 0.15 Rv0992c Conserved hypothetical protein 0.41 Rv3309c Probable uracil phosphoribosyltransferase Upp (UMP pyrophosphorylase) (uprtase) (UMP diphosphorylase) low > 58
Castellaniella sp019104865 MT123 0.15 ABCV34_RS13555 5-formyltetrahydrofolate cyclo-ligase 0.70 ABCV34_RS15380 uracil phosphoribosyltransferase — —
Dinoroseobacter shibae DFL-12 0.15 Dshi_2769 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.56 Dshi_0831 uracil phosphoribosyltransferase (RefSeq) low > 64
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS28640 5-formyltetrahydrofolate cyclo-ligase 0.48 QEN71_RS24390 uracil phosphoribosyltransferase low > 153
Phaeobacter inhibens DSM 17395 0.13 PGA1_c21820 5-formyltetrahydrofolate cycloligase-like protein 0.53 PGA1_c11960 uracil phosphoribosyltransferase Upp low > 62
Cupriavidus basilensis FW507-4G11 0.13 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase 0.53 RR42_RS30815 uracil phosphoribosyltransferase low > 128
Azospirillum sp. SherDot2 0.12 MPMX19_00693 5-formyltetrahydrofolate cyclo-ligase 0.45 MPMX19_02205 Uracil phosphoribosyltransferase low > 112

Not shown: 4 genomes with orthologs for EX31_RS21480 only; 24 genomes with orthologs for EX31_RS22700 only