Conservation of cofitness between EFB2_01343 and EFB2_03156 in Escherichia fergusonii Becca

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia fergusonii Becca 1.0 EFB2_01343 Nitrogen regulatory protein P-II 1 1.0 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase 0.65 15
Escherichia coli ECRC102 1.00 NIAGMN_19270 glnB nitrogen regulatory protein P-II 0.98 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01154 Nitrogen regulatory protein P-II 1 0.98 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli ECRC101 1.00 MCAODC_12030 glnB nitrogen regulatory protein P-II 0.98 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECOR38 1.00 HEPCGN_20645 glnB nitrogen regulatory protein P-II 0.95 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli BW25113 1.00 b2553 glnB regulatory protein P-II for glutamine synthetase (NCBI) 0.98 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_06720 glnB nitrogen regulatory protein P-II 0.98 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC100 1.00 OKFHMN_21500 glnB nitrogen regulatory protein P-II 0.98 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECOR27 1.00 NOLOHH_13175 glnB nitrogen regulatory protein P-II 0.98 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli BL21 1.00 ECD_02445 regulatory protein P-II for glutamine synthetase 0.98 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase low > 61
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14450 nitrogen regulatory protein P-II 1.00 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC62 1.00 BNILDI_11975 glnB nitrogen regulatory protein P-II 0.98 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.00 GFF2454 Nitrogen regulatory protein P-II 0.87 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Escherichia coli ECRC98 1.00 JDDGAC_25165 glnB nitrogen regulatory protein P-II 0.98 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Enterobacter sp. TBS_079 0.99 MPMX20_03422 Nitrogen regulatory protein P-II 0.88 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase low > 85
Enterobacter asburiae PDN3 0.99 EX28DRAFT_0097 nitrogen regulatory protein P-II family 0.87 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Klebsiella michiganensis M5al 0.99 BWI76_RS21245 nitrogen regulatory protein P-II 0.87 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Dickeya dadantii 3937 0.97 DDA3937_RS15635 nitrogen regulatory protein P-II 0.81 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.96 HGI48_RS15730 nitrogen regulatory protein P-II 0.79 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola ME23 0.96 DZA65_RS16810 nitrogen regulatory protein P-II 0.80 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.96 LU632_RS17925 glnB nitrogen regulatory protein P-II 0.79 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Pectobacterium carotovorum WPP14 0.95 HER17_RS05930 nitrogen regulatory protein P-II 0.77 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Pantoea sp. MT58 0.95 IAI47_04950 nitrogen regulatory protein P-II 0.82 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Serratia liquefaciens MT49 0.95 IAI46_19450 nitrogen regulatory protein P-II 0.79 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Rahnella sp. WP5 0.94 EX31_RS20610 nitrogen regulatory protein P-II 0.82 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11410 nitrogen regulatory protein P-II 0.73 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Shewanella sp. ANA-3 0.85 Shewana3_3124 nitrogen regulatory protein P-II (RefSeq) 0.66 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.85 SO3519 glnB-2 nitrogen regulatory protein P-II 1 (NCBI ptt file) 0.66 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.84 Sama_0935 nitrogen regulatory protein P-II (RefSeq) 0.67 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.83 Shew_1110 nitrogen regulatory protein P-II (RefSeq) 0.66 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Paraburkholderia graminis OAS925 0.82 ABIE53_001346 nitrogen regulatory protein P-II 1 0.55 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.82 QEN71_RS24890 P-II family nitrogen regulator 0.55 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.72 27
Paraburkholderia bryophila 376MFSha3.1 0.82 H281DRAFT_00219 nitrogen regulatory protein P-II family 0.56 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.82 BPHYT_RS05485 nitrogen regulatory protein P-II 1 0.56 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Kangiella aquimarina DSM 16071 0.82 B158DRAFT_2530 nitrogen regulatory protein P-II family 0.25 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.61 32
Cupriavidus basilensis FW507-4G11 0.81 RR42_RS04300 nitrogen regulatory protein P-II 1 0.51 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase low > 128
Ralstonia solanacearum GMI1000 0.80 RS_RS11770 nitrogen regulatory protein P-II 1 0.51 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.80 ABZR87_RS16080 P-II family nitrogen regulator 0.51 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia solanacearum PSI07 0.80 RPSI07_RS13170 nitrogen regulatory protein P-II 1 0.51 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.79 RALBFv3_RS04180 nitrogen regulatory protein P-II 1 0.51 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Ralstonia solanacearum UW163 0.79 UW163_RS09490 nitrogen regulatory protein P-II 1 0.51 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Alteromonas macleodii MIT1002 0.79 MIT1002_02726 Nitrogen regulatory protein P-II 0.67 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.76 TX73_015385 P-II family nitrogen regulator 0.15 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.75 Rru_A1130 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) 0.13 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Lysobacter sp. OAE881 0.74 ABIE51_RS00145 P-II family nitrogen regulator 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.74 Ga0059261_3385 nitrogen regulatory protein P-II family 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.74 A4249_RS05675 P-II family nitrogen regulator 0.15 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Magnetospirillum magneticum AMB-1 0.74 AMB_RS03570 P-II family nitrogen regulator 0.15 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.74 ABIE40_RS09340 P-II family nitrogen regulator 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.4913.1 Nitrogen regulatory protein P-II 0.16 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 74
Caulobacter crescentus NA1000 Δfur 0.73 CCNA_02046 nitrogen regulatory protein P-II 0.14 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.73 ABIE41_RS16890 P-II family nitrogen regulator 0.16 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 0.73 CCNA_02046 nitrogen regulatory protein P-II 0.14 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS07100 nitrogen regulatory protein P-II 1 0.13 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.73 MPMX19_01554 Nitrogen regulatory protein P-II 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.73 SMc00947 nitrogen regulatory protein PII 0.15 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.73 Atu1769 nitrogen regulatory protein PII 0.23 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS09460 nitrogen regulatory protein P-II 1 0.52 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.69 Dshi_1838 nitrogen regulatory protein P-II (RefSeq) 0.15 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.69 PGA1_c29400 nitrogen regulatory protein P-II 0.15 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Mycobacterium tuberculosis H37Rv 0.67 Rv2919c Probable nitrogen regulatory protein P-II GlnB 0.17 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —
Desulfovibrio vulgaris Hildenborough JW710 0.66 DVU1232 glnB-1 nitrogen regulatory protein P-II (TIGR) 0.23 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.66 DvMF_0865 nitrogen regulatory protein P-II (RefSeq) 0.28 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Synechococcus elongatus PCC 7942 0.65 Synpcc7942_0321 glnB nitrogen regulatory protein P-II 0.16 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bifidobacterium breve UCC2003 0.61 BBR_RS11520 P-II family nitrogen regulator 0.17 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase low > 34
Methanococcus maripaludis JJ 0.49 MMJJ_RS05115 P-II family nitrogen regulator 0.27 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis S2 0.49 MMP_RS00370 P-II family nitrogen regulator 0.26 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_1453 Nitrogen regulatory protein PII 0.26 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS14280 P-II family nitrogen regulator 0.24 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase low > 72
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS16020 P-II family nitrogen regulator 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase low > 56
Bacteroides ovatus ATCC 8483 0.39 BACOVA_03765 nitrogen regulatory protein P-II 0.26 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT0545 nitrogen regulatory protein P-II (NCBI ptt file) 0.27 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS06900 P-II family nitrogen regulator 0.24 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_21345 transcriptional regulator 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74

Not shown: 5 genomes with orthologs for EFB2_01343 only; 13 genomes with orthologs for EFB2_03156 only