Conservation of cofitness between EFB2_01343 and EFB2_01277 in Escherichia fergusonii Becca

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia fergusonii Becca 1.0 EFB2_01343 Nitrogen regulatory protein P-II 1 1.0 EFB2_01277 DNA repair protein RecN 0.65 13
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01154 Nitrogen regulatory protein P-II 1 0.99 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli BL21 1.00 ECD_02445 regulatory protein P-II for glutamine synthetase 0.99 ECD_02504 recombination and repair protein low > 61
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14450 nitrogen regulatory protein P-II 1.00 ECOLIN_RS14775 DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 MCAODC_12030 glnB nitrogen regulatory protein P-II 0.99 MCAODC_11670 recN DNA repair protein RecN low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.00 GFF2454 Nitrogen regulatory protein P-II 0.92 GFF4162 DNA repair protein RecN low > 78
Escherichia coli ECRC99 1.00 KEDOAH_06720 glnB nitrogen regulatory protein P-II 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECOR38 1.00 HEPCGN_20645 glnB nitrogen regulatory protein P-II 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 87
Escherichia coli ECOR27 1.00 NOLOHH_13175 glnB nitrogen regulatory protein P-II 0.99 NOLOHH_12815 recN DNA repair protein RecN low > 75
Escherichia coli ECRC102 1.00 NIAGMN_19270 glnB nitrogen regulatory protein P-II 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC98 1.00 JDDGAC_25165 glnB nitrogen regulatory protein P-II 0.99 JDDGAC_24810 recN DNA repair protein RecN low > 86
Escherichia coli ECRC62 1.00 BNILDI_11975 glnB nitrogen regulatory protein P-II 0.99 BNILDI_11620 recN DNA repair protein RecN low > 75
Escherichia coli BW25113 1.00 b2553 glnB regulatory protein P-II for glutamine synthetase (NCBI) 0.99 b2616 recN recombination and repair protein (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_21500 glnB nitrogen regulatory protein P-II 0.99 OKFHMN_21145 recN DNA repair protein RecN low > 80
Enterobacter asburiae PDN3 0.99 EX28DRAFT_0097 nitrogen regulatory protein P-II family 0.87 EX28DRAFT_2719 DNA repair protein RecN low > 76
Enterobacter sp. TBS_079 0.99 MPMX20_03422 Nitrogen regulatory protein P-II 0.86 MPMX20_03486 DNA repair protein RecN low > 85
Klebsiella michiganensis M5al 0.99 BWI76_RS21245 nitrogen regulatory protein P-II 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Dickeya dadantii 3937 0.97 DDA3937_RS15635 nitrogen regulatory protein P-II 0.72 DDA3937_RS04325 DNA repair protein RecN low > 74
Dickeya dianthicola 67-19 0.96 HGI48_RS15730 nitrogen regulatory protein P-II 0.72 HGI48_RS04320 DNA repair protein RecN low > 71
Erwinia tracheiphila SCR3 0.96 LU632_RS17925 glnB nitrogen regulatory protein P-II 0.73 LU632_RS16985 recN DNA repair protein RecN low > 74
Dickeya dianthicola ME23 0.96 DZA65_RS16810 nitrogen regulatory protein P-II 0.72 DZA65_RS04235 DNA repair protein RecN low > 75
Pectobacterium carotovorum WPP14 0.95 HER17_RS05930 nitrogen regulatory protein P-II 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Serratia liquefaciens MT49 0.95 IAI46_19450 nitrogen regulatory protein P-II 0.77 IAI46_19635 DNA repair protein RecN low > 86
Pantoea sp. MT58 0.95 IAI47_04950 nitrogen regulatory protein P-II 0.77 IAI47_04810 DNA repair protein RecN low > 76
Rahnella sp. WP5 0.94 EX31_RS20610 nitrogen regulatory protein P-II 0.76 EX31_RS21760 DNA repair protein RecN low > 89
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11410 nitrogen regulatory protein P-II 0.53 CSW01_04395 DNA repair protein RecN low > 62
Shewanella sp. ANA-3 0.85 Shewana3_3124 nitrogen regulatory protein P-II (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.85 SO3519 glnB-2 nitrogen regulatory protein P-II 1 (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.84 Sama_0935 nitrogen regulatory protein P-II (RefSeq) 0.54 Sama_1026 recombination and repair protein (RefSeq) low > 62
Shewanella loihica PV-4 0.83 Shew_1110 nitrogen regulatory protein P-II (RefSeq) 0.53 Shew_1196 recombination and repair protein (RefSeq) low > 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.82 GFF4272 Nitrogen regulatory protein P-II 0.32 GFF829 DNA repair protein RecN low > 90
Paraburkholderia graminis OAS925 0.82 ABIE53_001346 nitrogen regulatory protein P-II 1 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) low > 113
Burkholderia phytofirmans PsJN 0.82 BPHYT_RS05485 nitrogen regulatory protein P-II 1 0.35 BPHYT_RS03560 DNA repair protein low > 109
Paraburkholderia sabiae LMG 24235 0.82 QEN71_RS24890 P-II family nitrogen regulator 0.37 QEN71_RS26535 DNA repair protein RecN low > 153
Kangiella aquimarina DSM 16071 0.82 B158DRAFT_2530 nitrogen regulatory protein P-II family 0.37 B158DRAFT_0601 DNA replication and repair protein RecN low > 40
Paraburkholderia bryophila 376MFSha3.1 0.82 H281DRAFT_00219 nitrogen regulatory protein P-II family 0.35 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Cupriavidus basilensis FW507-4G11 0.81 RR42_RS04300 nitrogen regulatory protein P-II 1 0.35 RR42_RS05910 DNA repair protein low > 128
Dechlorosoma suillum PS 0.81 Dsui_1687 nitrogen regulatory protein PII 0.33 Dsui_3072 DNA repair protein RecN low > 51
Variovorax sp. SCN45 0.80 GFF1151 Nitrogen regulatory protein P-II 0.32 GFF2357 DNA repair protein RecN low > 127
Ralstonia solanacearum PSI07 0.80 RPSI07_RS13170 nitrogen regulatory protein P-II 1 0.36 RPSI07_RS11890 DNA repair protein RecN — —
Ralstonia solanacearum GMI1000 0.80 RS_RS11770 nitrogen regulatory protein P-II 1 0.35 RS_RS13275 DNA repair protein RecN low > 80
Ralstonia sp. UNC404CL21Col 0.80 ABZR87_RS16080 P-II family nitrogen regulator 0.36 ABZR87_RS01065 DNA repair protein RecN low > 80
Alteromonas macleodii MIT1002 0.79 MIT1002_02726 Nitrogen regulatory protein P-II 0.43 MIT1002_01443 Recombination protein N low > 70
Ralstonia solanacearum IBSBF1503 0.79 RALBFv3_RS04180 nitrogen regulatory protein P-II 1 0.36 RALBFv3_RS05415 DNA repair protein RecN low > 76
Ralstonia solanacearum UW163 0.79 UW163_RS09490 nitrogen regulatory protein P-II 1 0.36 UW163_RS08210 DNA repair protein RecN — —
Rhodopseudomonas palustris CGA009 0.76 TX73_015385 P-II family nitrogen regulator 0.24 TX73_018240 DNA repair protein RecN — —
Rhodospirillum rubrum S1H 0.75 Rru_A1130 Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI) 0.24 Rru_A0940 DNA repair protein RecN (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.74 A4249_RS05675 P-II family nitrogen regulator 0.22 A4249_RS02620 DNA repair protein RecN — —
Sphingomonas koreensis DSMZ 15582 0.74 Ga0059261_3385 nitrogen regulatory protein P-II family 0.25 Ga0059261_1026 DNA repair protein RecN — —
Lysobacter sp. OAE881 0.74 ABIE51_RS00145 P-II family nitrogen regulator 0.31 ABIE51_RS11655 DNA repair protein RecN low > 62
Magnetospirillum magneticum AMB-1 0.74 AMB_RS03570 P-II family nitrogen regulator 0.27 AMB_RS19520 DNA repair protein RecN — —
Caulobacter crescentus NA1000 0.73 CCNA_02046 nitrogen regulatory protein P-II 0.21 CCNA_02062 DNA repair protein recN — —
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.4913.1 Nitrogen regulatory protein P-II 0.30 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Bosea sp. OAE506 0.73 ABIE41_RS16890 P-II family nitrogen regulator 0.24 ABIE41_RS12645 DNA repair protein RecN — —
Caulobacter crescentus NA1000 Δfur 0.73 CCNA_02046 nitrogen regulatory protein P-II 0.21 CCNA_02062 DNA repair protein recN — —
Azospirillum sp. SherDot2 0.73 MPMX19_01554 Nitrogen regulatory protein P-II 0.24 MPMX19_01601 DNA repair protein RecN — —
Sinorhizobium meliloti 1021 0.73 SMc00947 nitrogen regulatory protein PII 0.27 SMc01877 DNA repair protein — —
Agrobacterium fabrum C58 0.73 Atu1769 nitrogen regulatory protein PII 0.26 Atu2083 DNA repair protein RecN — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS07100 nitrogen regulatory protein P-II 1 0.24 AZOBR_RS12395 DNA repair protein RecN — —
Castellaniella sp019104865 MT123 0.72 ABCV34_RS03065 P-II family nitrogen regulator 0.33 ABCV34_RS07470 DNA repair protein RecN low > 48
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS09460 nitrogen regulatory protein P-II 1 0.38 HSERO_RS03060 DNA repair protein — —
Dinoroseobacter shibae DFL-12 0.69 Dshi_1838 nitrogen regulatory protein P-II (RefSeq) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.69 PGA1_c29400 nitrogen regulatory protein P-II 0.24 PGA1_c09720 DNA repair protein RecN low > 62
Mycobacterium tuberculosis H37Rv 0.67 Rv2919c Probable nitrogen regulatory protein P-II GlnB 0.20 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.66 DVU1232 glnB-1 nitrogen regulatory protein P-II (TIGR) 0.17 DVU2463 recN DNA repair protein RecN (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.66 DvMF_0865 nitrogen regulatory protein P-II (RefSeq) 0.10 DvMF_0923 SMC domain protein (RefSeq) low > 51
Synechococcus elongatus PCC 7942 0.65 Synpcc7942_0321 glnB nitrogen regulatory protein P-II 0.23 Synpcc7942_1779 recN DNA repair protein RecN — —
Bifidobacterium breve UCC2003 0.61 BBR_RS11520 P-II family nitrogen regulator 0.15 BBR_RS14030 DNA repair protein RecN low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_1453 Nitrogen regulatory protein PII 0.23 Echvi_2067 DNA repair protein RecN low > 79
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS14280 P-II family nitrogen regulator 0.23 ABI39_RS14500 DNA repair protein RecN low > 72
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS16020 P-II family nitrogen regulator 0.24 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Bacteroides ovatus ATCC 8483 0.39 BACOVA_03765 nitrogen regulatory protein P-II 0.24 BACOVA_00200 DNA repair protein RecN low > 94
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS06900 P-II family nitrogen regulator 0.23 HMPREF1058_RS18225 DNA repair protein RecN low > 67
Bacteroides thetaiotaomicron VPI-5482 0.39 BT0545 nitrogen regulatory protein P-II (NCBI ptt file) 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_21345 transcriptional regulator 0.21 CA264_13235 DNA repair protein RecN low > 74

Not shown: 4 genomes with orthologs for EFB2_01343 only; 25 genomes with orthologs for EFB2_01277 only