Conservation of cofitness between ECD_03509 and ECD_03583 in Escherichia coli BL21

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_03583 gap repair protein 0.94 1
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 1.00 b3700 recF recombination protein F (NCBI) 0.49 8
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_04365 recF DNA replication/repair protein RecF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 1.00 ECOLIN_RS21310 DNA replication/repair protein RecF 0.90 1
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 1.00 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 1.00 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 1.00 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 1.00 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 1.00 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 1.00 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 1.00 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.96 GFF1756 DNA recombination and repair protein RecF 0.54 28
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.96 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.96 MPMX20_00003 DNA replication and repair protein RecF 0.45 10
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.94 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.84 IAI46_00015 DNA replication/repair protein RecF 0.80 7
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.83 IAI47_00015 DNA replication/repair protein RecF low > 76
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.81 HER17_RS00015 DNA replication/repair protein RecF low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.83 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.82 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.81 EX31_RS05975 DNA replication/repair protein RecF low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.82 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.82 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.56 CSW01_00065 DNA replication and repair protein RecF low > 62
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) 0.48 13
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.46 Shewana3_0011 recF recombination protein F (RefSeq) 0.59 5
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.46 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.51 21
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.33 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.40 PP_0012 DNA replication and repair protein low > 96
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.37 Psest_0004 recF protein — —
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.38 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.39 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.43 9
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.37 PS417_00015 recombinase RecF 0.38 27
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.39 AO353_10480 recombinase RecF 0.38 45
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.39 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.39 PFLU_RS00015 DNA replication/repair protein RecF 0.32 71
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.28 HP15_3705 DNA replication and repair protein recF 0.55 25
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.37 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.48 9
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.38 OH686_12620 DNA recombination and repair protein RecF low > 80
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.38 AO356_11635 recombinase RecF 0.58 4
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.38 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.39 Psyr_0003 DNA replication and repair protein RecF 0.51 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.39 Psyr_0003 DNA replication and repair protein RecF 0.57 6
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.24 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.24 ABZR86_RS15145 DNA replication/repair protein RecF 0.75 19
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.26 MPMX26_00003 DNA replication and repair protein RecF low > 36
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.24 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.22 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.24 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.26 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.31 B158DRAFT_0366 DNA replication and repair protein RecF low > 40
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.15 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.16 Atu0073 recF-like protein 0.61 5
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.12 PGA1_c00030 DNA replication and repair protein RecF 0.49 7
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.19 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.12 MPMX19_02716 DNA replication and repair protein RecF — —
Sinorhizobium meliloti 1021 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.14 SMc02863 recombination protein F 0.77 4
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.18 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.10 AZOBR_RS17670 recombinase RecF 0.36 30
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.07 Synpcc7942_2250 recF recombination protein F — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG 0.12 AMB_RS03285 DNA replication and repair protein RecF — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.16 HMPREF1078_RS14620 DNA replication and repair protein RecF — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.10 Dshi_3375 SMC domain protein (RefSeq) 0.68 4
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.18 Echvi_1156 recF protein 0.87 1
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.81 3
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.11 CCNA_00158 DNA replication and repair protein recF low > 67
Caulobacter crescentus NA1000 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.11 CCNA_00158 DNA replication and repair protein recF low > 66
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15020 DNA helicase RecG 0.15 CA264_17475 DNA replication and repair protein RecF 0.57 8
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.13 Ga0059261_2727 DNA replication and repair protein RecF — —
Fusobacterium nucleatum SB010 0.30 HUW76_01465 ATP-dependent DNA helicase RecG 0.18 HUW76_00025 DNA replication/repair protein RecF — —
Rhodospirillum rubrum S1H 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.10 Rru_A0003 RecF protein (NCBI) — —
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.16 ABIE41_RS04170 DNA replication/repair protein RecF low > 77
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.13 TX73_000015 DNA replication/repair protein RecF low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.18 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG 0.08 A4249_RS15360 DNA replication/repair protein RecF low > 48
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.14 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) low > 58

Not shown: 17 genomes with orthologs for ECD_03509 only; 2 genomes with orthologs for ECD_03583 only