Conservation of cofitness between CSW01_01985 and CSW01_05650 in Vibrio cholerae E7946 ATCC 55056

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 1.0 CSW01_05650 8-amino-7-oxononanoate synthase 0.45 7
Serratia liquefaciens MT49 0.77 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.43 IAI46_06530 8-amino-7-oxononanoate synthase low > 86
Erwinia amylovora T8 0.76 OLJFJH_03475 tRNA dihydrouridine(20/20a) synthase DusA 0.46 OLJFJH_16755 8-amino-7-oxononanoate synthase low > 58
Rahnella sp. WP5 0.76 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.44 EX31_RS23700 8-amino-7-oxononanoate synthase low > 89
Pantoea sp. MT58 0.76 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.41 IAI47_13525 8-amino-7-oxononanoate synthase low > 76
Escherichia coli ECRC99 0.75 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 KEDOAH_21515 bioF 8-amino-7-oxononanoate synthase — —
Klebsiella michiganensis M5al 0.75 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.42 BWI76_RS08765 8-amino-7-oxononanoate synthase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.44 OHPLBJKB_02937 8-amino-7-oxononanoate synthase low > 73
Escherichia coli ECOR38 0.75 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 HEPCGN_01645 bioF 8-amino-7-oxononanoate synthase low > 87
Escherichia coli ECRC98 0.75 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 JDDGAC_10030 bioF 8-amino-7-oxononanoate synthase low > 86
Escherichia coli ECOR27 0.75 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 NOLOHH_22765 bioF 8-amino-7-oxononanoate synthase low > 75
Escherichia coli ECRC62 0.75 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.45 BNILDI_21035 bioF 8-amino-7-oxononanoate synthase low > 75
Pectobacterium carotovorum WPP14 0.75 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.44 HER17_RS13455 8-amino-7-oxononanoate synthase low > 75
Escherichia coli ECRC102 0.75 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 NIAGMN_04440 bioF 8-amino-7-oxononanoate synthase — —
Escherichia coli ECRC100 0.75 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 OKFHMN_06395 bioF 8-amino-7-oxononanoate synthase low > 80
Escherichia coli BL21 0.75 ECD_03921 tRNA-dihydrouridine synthase A 0.44 ECD_00743 8-amino-7-oxononanoate synthase low > 61
Escherichia coli BW25113 0.75 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.44 b0776 bioF 8-amino-7-oxononanoate synthase (NCBI) low > 76
Escherichia coli Nissle 1917 0.75 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.45 ECOLIN_RS04135 8-amino-7-oxononanoate synthase — —
Dickeya dadantii 3937 0.75 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.45 DDA3937_RS08515 8-amino-7-oxononanoate synthase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.45 GFF672 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 78
Escherichia fergusonii Becca 0.75 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.45 EFB2_03329 8-amino-7-oxononanoate synthase low > 86
Enterobacter asburiae PDN3 0.75 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.44 EX28DRAFT_2215 8-amino-7-oxononanoate synthase low > 76
Dickeya dianthicola ME23 0.75 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.44 DZA65_RS08970 8-amino-7-oxononanoate synthase low > 75
Escherichia coli ECRC101 0.75 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.44 MCAODC_25610 bioF 8-amino-7-oxononanoate synthase low > 87
Enterobacter sp. TBS_079 0.75 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.44 MPMX20_01404 8-amino-7-oxononanoate synthase low > 85
Dickeya dianthicola 67-19 0.74 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.44 HGI48_RS08680 8-amino-7-oxononanoate synthase low > 71
Shewanella sp. ANA-3 0.73 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.36 Shewana3_2518 aminotransferase, class I and II (RefSeq) — —
Shewanella oneidensis MR-1 0.72 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.37 SO2739 bioF 8-amino-7-oxononanoate synthase (NCBI ptt file) 0.46 38
Shewanella loihica PV-4 0.72 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.40 Shew_1720 8-amino-7-oxononanoate synthase (RefSeq) — —
Shewanella amazonensis SB2B 0.71 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.30 Sama_1439 8-amino-7-oxononanoate synthase (RefSeq) — —
Erwinia tracheiphila SCR3 0.69 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.43 LU632_RS09135 bioF 8-amino-7-oxononanoate synthase — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.38 B158DRAFT_0865 8-amino-7-oxononanoate synthase — —
Azospirillum brasilense Sp245 0.61 AZOBR_RS15935 tRNA-dihydrouridine synthase A 0.25 AZOBR_RS31105 8-amino-7-oxononanoate synthase low > 97
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.31 ABZR86_RS15835 8-amino-7-oxononanoate synthase low > 74
Alteromonas macleodii MIT1002 0.58 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.35 MIT1002_01380 8-amino-7-oxononanoate synthase low > 70
Pseudomonas putida KT2440 0.58 PP_2169 tRNA-dihydrouridine synthase A 0.35 PP_0363 8-amino-7-oxononanoate synthase low > 96
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.34 LRK54_RS10255 8-amino-7-oxononanoate synthase low > 59
Rhodanobacter denitrificans MT42 0.57 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.34 LRK55_RS09895 8-amino-7-oxononanoate synthase low > 63
Rhodanobacter sp000427505 FW510-R12 0.57 LRK53_RS17400 tRNA dihydrouridine(20/20a) synthase DusA 0.34 LRK53_RS03035 8-amino-7-oxononanoate synthase low > 60
Marinobacter adhaerens HP15 0.57 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.35 HP15_2485 8-amino-7-oxononanoate synthase low > 73
Pseudomonas sp. DMC3 0.57 GFF1327 tRNA-dihydrouridine(20/20a) synthase 0.37 GFF75 8-amino-7-oxononanoate synthase low > 89
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_01364 NIFR3-like protein 0.25 CCNA_01647 8-amino-7-oxononanoate synthase low > 67
Pseudomonas sp. BP01 0.56 JOY50_RS25205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.37 JOY50_RS17935 bioF 8-amino-7-oxononanoate synthase low > 84
Caulobacter crescentus NA1000 0.56 CCNA_01364 NIFR3-like protein 0.25 CCNA_01647 8-amino-7-oxononanoate synthase low > 66
Pseudomonas sp. S08-1 0.56 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.37 OH686_10350 8-amino-7-oxononanoate synthase low > 80
Rhodanobacter sp. FW510-T8 0.56 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 OKGIIK_13655 bioF 8-amino-7-oxononanoate synthase low > 52
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.30 QEN71_RS01095 8-amino-7-oxononanoate synthase — —
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.36 Psyr_4686 8-amino-7-oxononanoate synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.36 Psyr_4686 8-amino-7-oxononanoate synthase low > 86
Acinetobacter radioresistens SK82 0.55 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.24 MPMX26_02453 8-amino-7-oxononanoate synthase 2 low > 36
Pseudomonas simiae WCS417 0.55 PS417_07740 tRNA-dihydrouridine synthase A 0.38 PS417_26000 8-amino-7-oxononanoate synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.37 PFLU_RS27645 8-amino-7-oxononanoate synthase low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.37 PFLU_RS27645 8-amino-7-oxononanoate synthase low > 109
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.37 Pf1N1B4_2488 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 87
Pseudomonas aeruginosa PA14 0.55 IKLFDK_14145 tRNA dihydrouridine(20/20a) synthase DusA 0.37 IKLFDK_22930 8-amino-7-oxononanoate synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.36 Pf6N2E2_4761 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.27 102
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.30 BPHYT_RS02160 8-amino-7-oxononanoate synthase low > 109
Pseudomonas stutzeri RCH2 0.54 Psest_2706 tRNA dihydrouridine synthase A 0.39 Psest_0412 8-amino-7-oxononanoate synthase low > 67
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.30 HSERO_RS12245 8-amino-7-oxononanoate synthase low > 78
Pseudomonas sp. SVBP6 0.54 COO64_RS09565 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.38 COO64_RS22720 bioF 8-amino-7-oxononanoate synthase low > 93
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_00295 tRNA-dihydrouridine synthase A 0.37 AO353_07520 8-amino-7-oxononanoate synthase low > 101
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.26 RALBFv3_RS00820 8-amino-7-oxononanoate synthase low > 76
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02170 tRNA-dihydrouridine synthase A 0.35 AO356_14140 8-amino-7-oxononanoate synthase low > 104
Ralstonia solanacearum UW163 0.54 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.26 UW163_RS14155 8-amino-7-oxononanoate synthase — —
Paraburkholderia graminis OAS925 0.54 ABIE53_001975 tRNA-dihydrouridine synthase A 0.31 ABIE53_000579 8-amino-7-oxononanoate synthase low > 113
Pseudomonas sp. RS175 0.54 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.37 PFR28_04102 8-amino-7-oxononanoate synthase 0.35 34
Ralstonia solanacearum PSI07 0.54 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.26 RPSI07_RS16700 8-amino-7-oxononanoate synthase low > 81
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.29 H281DRAFT_02095 8-amino-7-oxononanoate synthase low > 103
Agrobacterium fabrum C58 0.53 Atu1515 hypothetical protein 0.23 Atu3998 8-amino-7-oxononanoate synthase low > 89
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.26 ABZR87_RS12340 8-amino-7-oxononanoate synthase low > 80
Ralstonia solanacearum GMI1000 0.53 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.26 RS_RS07435 8-amino-7-oxononanoate synthase low > 80
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS12665 tRNA-dihydrouridine synthase A 0.28 RR42_RS10140 8-amino-7-oxononanoate synthase low > 128
Variovorax sp. OAS795 0.53 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.27 ABID97_RS16260 8-amino-7-oxononanoate synthase low > 91
Lysobacter sp. OAE881 0.52 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.35 ABIE51_RS01145 8-amino-7-oxononanoate synthase low > 62
Acidovorax sp. GW101-3H11 0.52 Ac3H11_2288 tRNA dihydrouridine synthase A 0.28 Ac3H11_3830 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 79
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.31 Xcc-8004.504.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 74
Variovorax sp. SCN45 0.51 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.26 GFF144 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 127
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.37 PfGW456L13_1148 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4791 tRNA dihydrouridine synthase A 0.29 GFF3995 8-amino-7-oxononanoate synthase (EC 2.3.1.47) low > 90
Castellaniella sp019104865 MT123 0.44 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.26 ABCV34_RS15295 8-amino-7-oxononanoate synthase low > 48

Not shown: 12 genomes with orthologs for CSW01_01985 only; 10 genomes with orthologs for CSW01_05650 only