| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12405 | | GTP diphosphokinase | 1.0 | CSW01_04590 | | transcriptional regulator GcvA | 0.46 | 10 |
| Dickeya dianthicola 67-19 | 0.67 | HGI48_RS17070 | | GTP diphosphokinase | 0.71 | HGI48_RS05050 | | transcriptional regulator GcvA | low | > 71 |
| Dickeya dadantii 3937 | 0.67 | DDA3937_RS17015 | | GTP diphosphokinase | 0.71 | DDA3937_RS05050 | | transcriptional regulator GcvA | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.67 | GFF4837 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | 0.73 | GFF4865 | | Glycine cleavage system transcriptional activator GcvA | low | > 78 |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS18145 | | GTP diphosphokinase | 0.71 | DZA65_RS05390 | | transcriptional regulator GcvA | low | > 75 |
| Klebsiella pneumoniae MKP103 | 0.67 | KDGMDA_03335 | | GTP diphosphokinase | 0.63 | KDGMDA_03515 | | Glycine cleavage system transcriptional activator | low | > 95 |
| Escherichia coli ECRC101 | 0.67 | MCAODC_10775 | relA | GTP diphosphokinase | 0.72 | MCAODC_10645 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 88 |
| Escherichia coli ECRC98 | 0.67 | JDDGAC_23915 | relA | GTP diphosphokinase | 0.72 | JDDGAC_23785 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 87 |
| Escherichia coli ECRC62 | 0.67 | BNILDI_10630 | relA | GTP diphosphokinase | 0.72 | BNILDI_10505 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 75 |
| Escherichia coli ECRC99 | 0.67 | KEDOAH_07880 | relA | GTP diphosphokinase | 0.72 | KEDOAH_08010 | gcvA | glycine cleavage system transcriptional regulator GcvA | — | — |
| Escherichia coli ECRC100 | 0.67 | OKFHMN_20250 | relA | GTP diphosphokinase | 0.72 | OKFHMN_20120 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 79 |
| Escherichia coli ECOR38 | 0.67 | HEPCGN_19500 | relA | GTP diphosphokinase | 0.72 | HEPCGN_19375 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 88 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.67 | OHPLBJKB_00947 | | GTP pyrophosphokinase | 0.72 | OHPLBJKB_00923 | | Glycine cleavage system transcriptional activator | low | > 74 |
| Escherichia coli ECOR27 | 0.67 | NOLOHH_12125 | relA | GTP diphosphokinase | 0.72 | NOLOHH_12000 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 76 |
| Escherichia coli ECRC102 | 0.67 | NIAGMN_18020 | relA | GTP diphosphokinase | 0.72 | NIAGMN_17890 | gcvA | glycine cleavage system transcriptional regulator GcvA | low | > 80 |
| Escherichia coli Nissle 1917 | 0.67 | ECOLIN_RS15515 | | GTP diphosphokinase | 0.72 | ECOLIN_RS15650 | | glycine cleavage system transcriptional regulator GcvA | low | > 55 |
| Escherichia coli BW25113 | 0.67 | b2784 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | 0.72 | b2808 | gcvA | DNA-binding transcriptional dual regulator (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.67 | ECD_02629 | | (p)ppGpp synthetase I/GTP pyrophosphokinase | 0.72 | ECD_02659 | | glycine cleavage system transcriptional activator; autorepressor | 0.39 | 51 |
| Escherichia fergusonii Becca | 0.67 | EFB2_01133 | | GTP pyrophosphokinase | 0.72 | EFB2_01109 | | Glycine cleavage system transcriptional activator | low | > 86 |
| Klebsiella michiganensis M5al | 0.67 | BWI76_RS22805 | | GTP diphosphokinase | 0.71 | BWI76_RS22955 | | transcriptional regulator GcvA | low | > 92 |
| Pantoea sp. MT58 | 0.66 | IAI47_04120 | | GTP diphosphokinase | 0.71 | IAI47_04025 | | transcriptional regulator GcvA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.66 | MPMX20_03653 | | GTP pyrophosphokinase | 0.71 | MPMX20_03671 | | Glycine cleavage system transcriptional activator | low | > 85 |
| Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_2864 | | (p)ppGpp synthetase, RelA/SpoT family | 0.71 | EX28DRAFT_2883 | | Transcriptional regulator | low | > 76 |
| Erwinia tracheiphila HP pepo 2.2 | 0.66 | IJEDHG_17375 | relA | GTP diphosphokinase | 0.71 | IJEDHG_17275 | gcvA | Glycine cleavage system transcriptional activator | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.66 | LU632_RS06350 | relA | GTP diphosphokinase | 0.71 | LU632_RS06255 | | transcriptional regulator GcvA | low | > 74 |
| Erwinia amylovora T8 | 0.66 | OLJFJH_09245 | | GTP diphosphokinase | 0.72 | OLJFJH_09170 | | Glycine cleavage system transcriptional activator | low | > 58 |
| Pantoea agglomerans CFBP13505 P0401 | 0.66 | PagCFBP13505_RS16850 | | GTP diphosphokinase | 0.71 | PagCFBP13505_RS16945 | | transcriptional regulator GcvA | low | > 74 |
| Rahnella sp. WP5 | 0.66 | EX31_RS07955 | | GTP diphosphokinase | 0.72 | EX31_RS13110 | | transcriptional regulator GcvA | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS04115 | | GTP diphosphokinase | 0.71 | HER17_RS16415 | | transcriptional regulator GcvA | low | > 75 |
| Serratia liquefaciens MT49 | 0.66 | IAI46_03600 | | GTP diphosphokinase | 0.72 | IAI46_20340 | | transcriptional regulator GcvA | low | > 86 |
| Shewanella amazonensis SB2B | 0.57 | Sama_1033 | | GTP diphosphokinase (RefSeq) | 0.72 | Sama_2429 | | DNA-binding transcriptional activator GcvA (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | 0.71 | Shewana3_2894 | | DNA-binding transcriptional activator GcvA (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.56 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | 0.70 | SO1533 | | glycine cleavage system transcriptional activator, putative (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.56 | Shew_1202 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | 0.71 | Shew_2764 | | DNA-binding transcriptional activator GcvA (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_00794 | | GTP pyrophosphokinase | 0.65 | MIT1002_01520 | | Gcv operon activator | low | > 70 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_3695 | | RelA/SpoT protein | 0.29 | Psyr_5015 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_2035 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 0.29 | PfGW456L13_555 | | Glycine cleavage system transcriptional activator | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_3695 | | RelA/SpoT protein | 0.29 | Psyr_5015 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_19060 | | (p)ppGpp synthetase | 0.31 | AO356_15125 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas sp. RS175 | 0.45 | PFR28_03223 | | GTP pyrophosphokinase | 0.31 | PFR28_04727 | | Glycine cleavage system transcriptional activator | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.45 | GEMAOFIL_04223 | | GTP pyrophosphokinase | 0.30 | GEMAOFIL_02417 | | Glycine cleavage system transcriptional activator | low | > 93 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_5723 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 0.37 | Pf6N2E2_1560 | | Glycine cleavage system transcriptional activator GcvA | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_02710 | | (p)ppGpp synthetase | 0.29 | AO353_15505 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS22095 | | GTP diphosphokinase | 0.30 | PFLU_RS25165 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS22095 | | GTP diphosphokinase | 0.30 | PFLU_RS25165 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_3508 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | 0.30 | Pf1N1B4_1817 | | Glycine cleavage system transcriptional activator | low | > 87 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_20150 | | (p)ppGpp synthetase | 0.30 | PS417_23350 | | LysR family transcriptional regulator | — | — |
| Pseudomonas sp. DMC3 | 0.45 | GFF4818 | | GTP pyrophosphokinase | 0.29 | GFF687 | | Glycine cleavage system transcriptional activator | low | > 89 |
| Pseudomonas putida KT2440 | 0.45 | PP_1656 | | ATP:GTP 3'-pyrophosphotransferase | 0.30 | PP_0661 | | putative Transcriptional regulator AmpR | low | > 96 |
| Pseudomonas sp. BP01 | 0.45 | JOY50_RS23910 | relA | GTP diphosphokinase | 0.30 | JOY50_RS09180 | | LysR family transcriptional regulator | low | > 84 |
| Pseudomonas sp. SVBP6 | 0.45 | COO64_RS07325 | relA | GTP diphosphokinase | 0.34 | COO64_RS14470 | gcvA | transcriptional regulator GcvA | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.45 | IKLFDK_04200 | | GTP diphosphokinase | 0.31 | IKLFDK_23190 | | LysR family transcriptional regulator | low | > 100 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | 0.31 | OH686_11695 | | Transcriptional regulator, LysR family | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_1640 | | (p)ppGpp synthetase, RelA/SpoT family | 0.30 | Psest_2739 | | Transcriptional regulator | low | > 67 |
| Pseudomonas segetis P6 | 0.44 | MPMX49_01654 | | GTP pyrophosphokinase | 0.29 | MPMX49_00400 | | Glycine cleavage system transcriptional activator | low | > 75 |
| Marinobacter adhaerens HP15 | 0.43 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | 0.24 | HP15_1669 | | transcriptional regulator, LysR family protein | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_2277 | | (p)ppGpp synthetase, RelA/SpoT family | 0.53 | B158DRAFT_0909 | | Transcriptional regulator | low | > 40 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1489.1 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.22 | Xcc-8004.1418.1 | | Glycine cleavage system transcriptional activator | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS19725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.33 | ABZR86_RS20860 | | transcriptional regulator GcvA | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.39 | OKGIIK_02170 | relA | GTP diphosphokinase | 0.18 | OKGIIK_16180 | | Biotin transporter BioY | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.38 | LRK54_RS12725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.27 | LRK54_RS06630 | | transcriptional regulator GcvA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.38 | LRK55_RS12430 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.27 | LRK55_RS06375 | | transcriptional regulator GcvA | low | > 63 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.35 | RS_RS13815 | | transcriptional regulator GcvA | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.34 | ABZR87_RS01495 | | transcriptional regulator GcvA | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.33 | RPSI07_RS11375 | | transcriptional regulator GcvA | low | > 81 |
| Rhodanobacter sp000427505 FW510-R12 | 0.38 | LRK53_RS15870 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.26 | LRK53_RS10360 | | LysR substrate-binding domain-containing protein | low | > 59 |
| Dechlorosoma suillum PS | 0.38 | Dsui_2816 | | (p)ppGpp synthetase, RelA/SpoT family | 0.27 | Dsui_2033 | | transcriptional regulator | low | > 51 |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.32 | UW163_RS22635 | | transcriptional regulator GcvA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.32 | RALBFv3_RS22095 | | transcriptional regulator GcvA | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.37 | QEN71_RS05265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.32 | QEN71_RS01310 | | transcriptional regulator GcvA | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS06585 | | GTP pyrophosphokinase | 0.31 | RR42_RS34190 | | LysR family transcriptional regulator | low | > 128 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS05170 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.26 | ABIE51_RS00605 | | LysR substrate-binding domain-containing protein | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_002905 | | GTP pyrophosphokinase | 0.37 | ABIE53_001336 | | LysR family glycine cleavage system transcriptional activator | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_04499 | | GTP pyrophosphokinase | 0.31 | H281DRAFT_02051 | | LysR family transcriptional regulator, glycine cleavage system transcriptional activator | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS09855 | | GTP pyrophosphokinase | 0.28 | HSERO_RS07925 | | LysR family transcriptional regulator | low | > 78 |
| Acinetobacter baumannii LAC-4 | 0.35 | RR41_RS16080 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.24 | RR41_RS15665 | | LysR family transcriptional regulator | low | > 55 |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS13655 | | GTP pyrophosphokinase | 0.34 | BPHYT_RS11810 | | LysR family transcriptional regulator | low | > 109 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_00539 | | GTP pyrophosphokinase | 0.27 | MPMX26_01927 | | Glycine cleavage system transcriptional activator | — | — |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_362 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.28 | Ac3H11_902 | | Glycine cleavage system transcriptional activator | — | — |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS08440 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.27 | ABCV34_RS01790 | | LysR substrate-binding domain-containing protein | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF4925 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.28 | GFF4407 | | Glycine cleavage system transcriptional activator | low | > 90 |
| Variovorax sp. SCN45 | 0.32 | GFF403 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.32 | GFF1355 | | Transcriptional regulator, LysR family | low | > 127 |
Not shown: 6 genomes with orthologs for CSW01_12405 only; 19 genomes with orthologs for CSW01_04590 only