Conservation of cofitness between CSW01_09275 and CSW01_02410 in Vibrio cholerae E7946 ATCC 55056

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09275 hypothetical protein 1.0 CSW01_02410 adenine DNA glycosylase 0.54 7
Klebsiella pneumoniae MKP103 0.45 KDGMDA_24515 YchJ family protein 0.55 KDGMDA_04655 A/G-specific adenine glycosylase low > 95
Dickeya dadantii 3937 0.44 DDA3937_RS10330 YchJ family protein 0.58 DDA3937_RS04900 A/G-specific adenine glycosylase low > 74
Klebsiella michiganensis M5al 0.44 BWI76_RS17285 hypothetical protein 0.55 BWI76_RS24155 A/G-specific adenine glycosylase low > 92
Dickeya dianthicola 67-19 0.43 HGI48_RS10340 YchJ family protein 0.56 HGI48_RS04910 A/G-specific adenine glycosylase low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS10815 YchJ family protein 0.56 DZA65_RS05245 A/G-specific adenine glycosylase low > 75
Erwinia amylovora T8 0.42 OLJFJH_13280 YchJ family protein 0.55 OLJFJH_08495 A/G-specific adenine glycosylase low > 58
Pectobacterium carotovorum WPP14 0.42 HER17_RS11060 YchJ family protein 0.57 HER17_RS16625 A/G-specific adenine glycosylase low > 75
Escherichia coli ECRC102 0.42 NIAGMN_27660 ychJ YchJ family protein 0.57 NIAGMN_16965 mutY A/G-specific adenine glycosylase low > 80
Escherichia coli ECRC101 0.42 MCAODC_21685 ychJ YchJ family protein 0.57 MCAODC_09720 mutY A/G-specific adenine glycosylase low > 87
Escherichia coli ECRC99 0.42 KEDOAH_25570 ychJ YchJ family protein 0.57 KEDOAH_08940 mutY A/G-specific adenine glycosylase — —
Escherichia coli ECOR38 0.42 HEPCGN_25035 ychJ YchJ family protein 0.57 HEPCGN_18470 mutY A/G-specific adenine glycosylase low > 88
Escherichia coli ECRC62 0.42 BNILDI_18630 ychJ YchJ family protein 0.57 BNILDI_09645 mutY A/G-specific adenine glycosylase low > 75
Escherichia coli ECRC98 0.42 JDDGAC_06000 ychJ YchJ family protein 0.57 JDDGAC_22830 mutY A/G-specific adenine glycosylase low > 87
Escherichia coli BL21 0.42 ECD_01209 UPF0225 family protein 0.57 ECD_02791 adenine DNA glycosylase low > 61
Escherichia coli ECRC100 0.42 OKFHMN_28575 ychJ YchJ family protein 0.57 OKFHMN_19200 mutY A/G-specific adenine glycosylase low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_02452 hypothetical protein 0.57 OHPLBJKB_00755 Adenine DNA glycosylase low > 74
Escherichia coli Nissle 1917 0.42 ECOLIN_RS07465 YchJ family protein 0.57 ECOLIN_RS16470 A/G-specific adenine glycosylase — —
Escherichia coli ECOR27 0.42 NOLOHH_20475 ychJ YchJ family protein 0.57 NOLOHH_11060 mutY A/G-specific adenine glycosylase low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_02595 hypothetical protein 0.55 MPMX20_03818 Adenine DNA glycosylase low > 85
Escherichia coli BW25113 0.42 b1233 ychJ hypothetical protein (NCBI) 0.57 b2961 mutY adenine DNA glycosylase (NCBI) low > 76
Escherichia fergusonii Becca 0.41 EFB2_02693 hypothetical protein 0.57 EFB2_00941 Adenine DNA glycosylase low > 86
Serratia liquefaciens MT49 0.41 IAI46_14260 YchJ family protein 0.59 IAI46_21465 A/G-specific adenine glycosylase low > 87
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0859 Uncharacterized protein conserved in bacteria 0.56 EX28DRAFT_2998 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) low > 76
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_1196 Uncharacterized protein conserved in bacteria 0.47 B158DRAFT_0205 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) low > 40
Shewanella oneidensis MR-1 0.37 SO2497 conserved hypothetical protein (NCBI ptt file) 0.57 SO3368 mutY A/G-specific adenine glycosylase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_2159 SecC motif-containing protein (RefSeq) 0.55 Shewana3_1181 A/G-specific DNA-adenine glycosylase (RefSeq) low > 73
Pantoea sp. MT58 0.37 IAI47_09015 YchJ family protein 0.55 IAI47_03560 A/G-specific adenine glycosylase low > 76
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_22675 YchJ family protein 0.55 IJEDHG_03490 mutY A/G-specific adenine glycosylase low > 61
Erwinia tracheiphila SCR3 0.36 LU632_RS12935 YchJ family protein 0.55 LU632_RS05420 mutY A/G-specific adenine glycosylase low > 73
Rahnella sp. WP5 0.35 EX31_RS10110 YchJ family protein 0.57 EX31_RS02735 A/G-specific adenine glycosylase low > 89
Azospirillum brasilense Sp245 0.34 AZOBR_RS20310 hypothetical protein 0.31 AZOBR_RS20275 adenine glycosylase low > 97
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2949 UPF0225 protein YchJ 0.45 Pf6N2E2_3846 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.20 59
Pseudomonas sp. RS175 0.34 PFR28_00514 hypothetical protein 0.44 PFR28_04925 Adenine DNA glycosylase low > 88
Pantoea agglomerans CFBP13505 P0401 0.34 PagCFBP13505_RS02855 YchJ family protein 0.55 PagCFBP13505_RS16135 A/G-specific adenine glycosylase low > 74
Pseudomonas segetis P6 0.33 MPMX49_03505 hypothetical protein 0.47 MPMX49_04306 Adenine DNA glycosylase low > 75
Pseudomonas sp. DMC3 0.33 GFF2154 hypothetical protein 0.47 GFF4102 Adenine DNA glycosylase low > 89
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_4631 UPF0225 protein YchJ 0.46 PfGW456L13_366 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Pseudomonas stutzeri RCH2 0.32 Psest_2861 Uncharacterized protein conserved in bacteria 0.45 Psest_0145 A/G-specific adenine glycosylase low > 67
Pseudomonas sp. S08-1 0.32 OH686_04855 UPF0225 protein YchJ 0.47 OH686_14550 A/G-specific adenine glycosylase low > 80
Shewanella amazonensis SB2B 0.32 Sama_1820 metal-binding protein (RefSeq) 0.54 Sama_2490 A/G-specific adenine glycosylase (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_05460 hypothetical protein 0.45 AO356_09830 A/G-specific adenine glycosylase low > 104
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_16995 hypothetical protein 0.46 AO353_12050 A/G-specific adenine glycosylase low > 101
Pseudomonas simiae WCS417 0.32 PS417_06485 hypothetical protein 0.47 PS417_01545 adenine glycosylase low > 88
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_3187 UPF0225 protein YchJ 0.46 Pf1N1B4_1631 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Pseudomonas orientalis W4I3 0.32 QF045_RS09290 YchJ family protein 0.46 QF045_RS04615 A/G-specific adenine glycosylase low > 93
Pseudomonas aeruginosa PUPa3 0.31 DQ20_RS45520 YchJ family protein 0.44 DQ20_RS50525 mutY;go_function=DNA A/G-specific adenine glycosylase 0.20 69
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_3863 SEC-C motif protein 0.47 Psyr_4901 A/G-specific DNA-adenine glycosylase low > 86
Magnetospirillum magneticum AMB-1 0.31 AMB_RS00035 hypothetical protein 0.29 AMB_RS20165 A/G-specific adenine glycosylase low > 64
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_3863 SEC-C motif protein 0.47 Psyr_4901 A/G-specific DNA-adenine glycosylase low > 86
Pseudomonas lactucae CFBP13502 0.31 GEMAOFIL_01459 hypothetical protein 0.46 GEMAOFIL_00529 Adenine DNA glycosylase low > 96
Pseudomonas aeruginosa MRSN321 0.31 DY961_RS07265 YchJ family protein 0.44 DY961_RS11575 mutY;go_function=DNA A/G-specific adenine glycosylase low > 100
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS06515 YchJ family protein 0.47 PFLU_RS01590 A/G-specific adenine glycosylase low > 109
Pseudomonas fluorescens SBW25 0.31 PFLU_RS06515 YchJ family protein 0.47 PFLU_RS01590 A/G-specific adenine glycosylase low > 109
Pseudomonas putida KT2440 0.31 PP_1119 conserved protein of unknown function 0.46 PP_0286 adenine glycosylase low > 96
Pseudomonas aeruginosa PA14 0.31 IKLFDK_04750 YchJ family protein 0.44 IKLFDK_27760 A/G-specific adenine glycosylase low > 98
Pseudomonas sp. BP01 0.31 JOY50_RS24110 YchJ family protein 0.45 JOY50_RS25485 mutY A/G-specific adenine glycosylase low > 84
Pseudomonas sp. SVBP6 0.31 COO64_RS16985 YchJ family protein 0.47 COO64_RS00245 mutY A/G-specific adenine glycosylase low > 93
Desulfovibrio vulgaris Hildenborough JW710 0.31 DVU0242 SEC-C motif domain protein (TIGR) 0.28 DVU0282 mutY A/G-specific adenine glycosylase (TIGR) low > 55
Shewanella loihica PV-4 0.31 Shew_2056 SecC motif-containing protein (RefSeq) 0.53 Shew_1123 A/G-specific adenine glycosylase (RefSeq) — —
Rhodospirillum rubrum S1H 0.30 Rru_A1982 SEC-C domain protein (NCBI) 0.31 Rru_A3251 A/G-specific adenine glycosylase MutY (NCBI) low > 58
Acinetobacter baumannii LAC-4 0.30 RR41_RS17945 YchJ family protein 0.34 RR41_RS00245 A/G-specific adenine glycosylase low > 55
Cellulophaga baltica 18 0.29 M666_RS05800 YchJ family metal-binding protein 0.30 M666_RS03315 A/G-specific adenine glycosylase low > 67
Acinetobacter radioresistens SK82 0.27 MPMX26_00137 hypothetical protein 0.34 MPMX26_02995 Adenine DNA glycosylase low > 36
Alteromonas macleodii MIT1002 0.26 MIT1002_02313 SEC-C motif 0.53 MIT1002_00239 A/G-specific adenine glycosylase low > 70
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS14360 preprotein translocase subunit SecA 0.26 CA265_RS22680 A/G-specific adenine glycosylase low > 88
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_12900 ychJ UPF0225 protein XHC_4340 0.43 OKGIIK_02565 mutY A/G-specific adenine glycosylase low > 53
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS06285 YchJ family protein 0.41 ABZR87_RS07025 A/G-specific adenine glycosylase low > 80
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS10980 hypothetical protein 0.43 LRK54_RS13325 A/G-specific adenine glycosylase low > 59
Rhodanobacter denitrificans MT42 0.24 LRK55_RS10685 YchJ family metal-binding protein 0.43 LRK55_RS13065 A/G-specific adenine glycosylase low > 63
Rhodanobacter sp000427505 FW510-R12 0.23 LRK53_RS03770 hypothetical protein 0.40 LRK53_RS15255 A/G-specific adenine glycosylase low > 59
Lysobacter sp. OAE881 0.23 ABIE51_RS00530 YchJ family protein 0.39 ABIE51_RS15140 A/G-specific adenine glycosylase low > 62
Castellaniella sp019104865 MT123 0.23 ABCV34_RS04500 YchJ family metal-binding protein 0.34 ABCV34_RS10845 A/G-specific adenine glycosylase 0.27 10
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS16820 YchJ family metal-binding protein 0.42 ABZR86_RS19975 A/G-specific adenine glycosylase low > 74
Dechlorosoma suillum PS 0.22 Dsui_2325 hypothetical protein 0.40 Dsui_0998 A/G-specific adenine glycosylase low > 51
Ralstonia solanacearum PSI07 0.22 RPSI07_RS22830 hypothetical protein 0.43 RPSI07_RS22165 A/G-specific adenine glycosylase low > 81
Ralstonia solanacearum UW163 0.22 UW163_RS03095 hypothetical protein 0.42 UW163_RS02445 A/G-specific adenine glycosylase — —
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS10485 hypothetical protein 0.42 RALBFv3_RS11135 A/G-specific adenine glycosylase low > 76
Ralstonia solanacearum GMI1000 0.21 RS_RS01325 hypothetical protein 0.43 RS_RS01985 A/G-specific adenine glycosylase low > 80
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS00910 hypothetical protein 0.38 RR42_RS02050 adenine glycosylase low > 128
Herbaspirillum seropedicae SmR1 0.18 HSERO_RS23450 hypothetical protein 0.44 HSERO_RS19540 adenine glycosylase low > 78
Variovorax sp. OAS795 0.18 ABID97_RS25230 YchJ family metal-binding protein 0.39 ABID97_RS23715 A/G-specific adenine glycosylase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.18 GFF1717 UPF0225 protein YchJ 0.34 GFF827 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 90
Paraburkholderia bryophila 376MFSha3.1 0.17 H281DRAFT_02092 SEC-C motif-containing protein 0.45 H281DRAFT_01933 A/G-specific DNA-adenine glycosylase low > 103
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS02215 hypothetical protein 0.45 BPHYT_RS02875 adenine glycosylase — —
Variovorax sp. SCN45 0.16 GFF1999 GTG start codon 0.39 GFF2355 A/G-specific adenine glycosylase (EC 3.2.2.-) — —

Not shown: 2 genomes with orthologs for CSW01_09275 only; 24 genomes with orthologs for CSW01_02410 only