Conservation of cofitness between CSW01_05805 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA 1.0 CSW01_00650 tyrosine recombinase XerC 0.49 6
Dickeya dianthicola 67-19 0.79 HGI48_RS09575 ATP-dependent Clp protease ATP-binding subunit ClpA 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.67 23
Dickeya dianthicola ME23 0.79 DZA65_RS09885 ATP-dependent Clp protease ATP-binding subunit ClpA 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Klebsiella pneumoniae MKP103 0.79 KDGMDA_17860 ATP-dependent Clp protease ATP-binding subunit ClpA 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 94
Klebsiella pneumoniae MRSN742743 0.79 GJGHJB_03330 ATP-dependent Clp protease ATP-binding subunit 0.53 GJGHJB_04826 xerC tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.79 DDA3937_RS09560 ATP-dependent Clp protease ATP-binding subunit ClpA 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF4901 ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 GFF239 Tyrosine recombinase XerC — —
Erwinia amylovora T8 0.79 OLJFJH_16215 ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Escherichia coli Nissle 1917 0.79 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 ECOLIN_RS21875 tyrosine recombinase XerC low > 55
Escherichia coli ECRC101 0.79 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli ECOR38 0.79 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC low > 88
Escherichia fergusonii Becca 0.79 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli BW25113 0.79 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Escherichia coli ECRC99 0.79 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.79 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC62 0.79 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECRC102 0.79 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC100 0.79 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Enterobacter sp. TBS_079 0.79 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA 0.52 MPMX20_04465 Tyrosine recombinase XerC low > 85
Escherichia coli ECOR27 0.79 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 75
Klebsiella michiganensis M5al 0.78 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 BWI76_RS01210 tyrosine recombinase XerC low > 92
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Pectobacterium carotovorum WPP14 0.78 HER17_RS12400 ATP-dependent Clp protease ATP-binding subunit ClpA 0.54 HER17_RS01350 tyrosine recombinase XerC low > 75
Rahnella sp. WP5 0.78 EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Escherichia coli BL21 0.78 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity 0.55 ECD_03687 site-specific tyrosine recombinase low > 61
Serratia liquefaciens MT49 0.78 IAI46_08515 ATP-dependent Clp protease ATP-binding subunit ClpA 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Pantoea sp. MT58 0.78 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA 0.53 IAI47_18400 tyrosine recombinase XerC low > 76
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13516_RS13030 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.53 PagCFBP13516_RS18660 xerC tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_20185 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.76 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Alteromonas macleodii MIT1002 0.73 MIT1002_01834 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Shewanella amazonensis SB2B 0.72 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Shewanella sp. ANA-3 0.71 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO2626 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Marinobacter adhaerens HP15 0.68 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA 0.44 HP15_250 site-specific tyrosine recombinase XerC low > 73
Pseudomonas simiae WCS417 0.67 PS417_16510 Clp protease ClpX 0.34 PS417_27595 recombinase XerC low > 88
Pseudomonas sp. DMC3 0.67 GFF1525 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas sp. RS175 0.67 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas orientalis W4I3 0.67 QF045_RS18265 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Pseudomonas sp. BP01 0.66 JOY50_RS06555 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas putida KT2440 0.66 PP_4008 ATP-dependent serine protease 0.39 PP_5230 Tyrosine recombinase XerC low > 96
Pseudomonas segetis P6 0.66 ACVTMO_RS12615 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas fluorescens SBW25 0.66 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas aeruginosa PA14 0.66 IKLFDK_13150 ATP-dependent Clp protease ATP-binding subunit ClpA 0.40 IKLFDK_27050 tyrosine recombinase XerC low > 98
Pseudomonas aeruginosa PUPa3 0.66 NPBIFN_02439 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.40 NPBIFN_05607 xerC tyrosine recombinase XerC low > 101
Pseudomonas sp. SVBP6 0.66 COO64_RS24200 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 91
Pseudomonas aeruginosa MRSN321 0.66 PFGADD_02400 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.40 PFGADD_05531 xerC tyrosine recombinase XerC low > 99
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 AO353_09050 recombinase XerC low > 101
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas sp. S08-1 0.66 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas protegens RBAN4 0.66 FABNJH_20085 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.39 FABNJH_30340 xerC tyrosine recombinase XerC — —
Pseudomonas lactucae CFBP13502 0.66 GEMAOFIL_03629 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 AO356_12725 recombinase XerC low > 104
Pseudomonas sp. FW215-L2 0.66 GFF2710 ATP-dependent Clp protease ATP-binding subunit ClpA 0.36 GFF4511 Tyrosine recombinase XerC low > 111
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC low > 103
Pseudomonas stutzeri RCH2 0.66 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA 0.40 Psest_3767 tyrosine recombinase XerC low > 67
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS02200 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 ABZR86_RS15025 tyrosine recombinase XerC low > 74
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS00420 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_06890 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Rhodanobacter denitrificans MT42 0.64 LRK55_RS00160 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter sp000427505 FW510-R12 0.64 LRK53_RS09730 ATP-dependent Clp protease ATP-binding subunit ClpA 0.37 LRK53_RS02315 tyrosine recombinase XerC low > 59
Lysobacter sp. OAE881 0.63 ABIE51_RS11490 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 ABIE51_RS03035 tyrosine recombinase XerC low > 62
Collimonas humicola GW821-FHT01A05 0.63 MPMX01_01133 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 MPMX01_04647 Tyrosine recombinase XerC — —
Dechlorosoma suillum PS 0.62 Dsui_0009 ATP-dependent Clp protease ATP-binding subunit clpA 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2754.1 ATP-dependent Clp protease ATP-binding subunit ClpA 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS00435 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS07030 ATP-dependent Clp protease ATP-binding protein 0.35 HSERO_RS21475 recombinase XerC — —
Ralstonia solanacearum GMI1000 0.62 RS_RS12370 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 RS_RS00260 Tyrosine recombinase XerC 1 — —
Methylophilus sp. DMC18 0.62 GFF1738 ATP-dependent Clp protease ATP-binding subunit ClpA 0.40 GFF1535 Tyrosine recombinase XerC — —
Ralstonia solanacearum UW163 0.62 UW163_RS08860 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS04810 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 RALBFv3_RS09675 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS12575 ATP-dependent Clp protease ATP-binding subunit ClpA 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS17105 Clp protease ClpX 0.31 RR42_RS00615 recombinase XerC low > 128
Variovorax sp. SCN45 0.60 GFF341 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS03005 ATP-dependent Clp protease ATP-binding subunit ClpA 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF4521 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 GFF547 Tyrosine recombinase XerC low > 92
Variovorax sp. OAS795 0.60 ABID97_RS16910 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 ABID97_RS06150 tyrosine recombinase XerC low > 91
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS15710 ATP-dependent Clp protease ATP-binding protein 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Acidovorax sp. GW101-3H11 0.60 Ac3H11_2456 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04082 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Castellaniella sp019104865 MT123 0.59 ABCV34_RS05305 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS09040 AAA family ATPase 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67

Not shown: 22 genomes with orthologs for CSW01_05805 only; 4 genomes with orthologs for CSW01_00650 only