| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pedobacter sp. GW460-11-11-14-LB5 | 1.0 | CA265_RS01030 | | ABC transporter substrate-binding protein | 1.0 | CA265_RS22400 | | AAA family ATPase | 0.39 | 7 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.67 | ABZR88_RS16670 | | ABC transporter substrate-binding protein | 0.76 | ABZR88_RS20285 | | replication-associated recombination protein A | low | > 71 |
| Sinorhizobium meliloti 1021 | 0.15 | SMc04293 | | peptide-binding periplasmic ABC transporter protein | 0.39 | SMc01279 | | recombination factor protein RarA | low | > 103 |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS13565 | | peptide ABC transporter substrate-binding protein | 0.41 | ABIE40_RS08045 | | replication-associated recombination protein A | low | > 107 |
| Agrobacterium fabrum C58 | 0.15 | Atu4259 | | oligopeptide ABC transporter substrate-binding protein | 0.40 | Atu1914 | | ATPase, AAA family protein | low | > 89 |
| Burkholderia phytofirmans PsJN | 0.15 | BPHYT_RS02265 | | peptide ABC transporter substrate-binding protein | 0.42 | BPHYT_RS05100 | | ATPase AAA | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.15 | H281DRAFT_02084 | | dipeptide transport system substrate-binding protein | 0.41 | H281DRAFT_00180 | | Recombination protein MgsA | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.15 | ABIE53_000595 | | dipeptide transport system substrate-binding protein | 0.42 | ABIE53_001292 | | putative ATPase | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.14 | QEN71_RS01150 | | ABC transporter substrate-binding protein | 0.42 | QEN71_RS03415 | | replication-associated recombination protein A | low | > 153 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.14 | GFF728 | | Dipeptide transport system, periplasmic component in protein degradation cluster | 0.42 | GFF4896 | | FIG065221: Holliday junction DNA helicase | low | > 78 |
| Escherichia coli ECRC98 | 0.14 | JDDGAC_19730 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | low | > 86 |
| Escherichia coli ECRC102 | 0.14 | NIAGMN_13860 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC62 | 0.14 | BNILDI_03520 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | low | > 75 |
| Escherichia coli ECRC101 | 0.14 | MCAODC_06615 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | low | > 87 |
| Escherichia coli BW25113 | 0.14 | b3544 | dppA | dipeptide transporter (NCBI) | 0.42 | b0892 | ycaJ | recombination protein (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.14 | OKFHMN_16100 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.14 | OHPLBJKB_00162 | | Periplasmic dipeptide transport protein | 0.42 | OHPLBJKB_02776 | | Replication-associated recombination protein A | low | > 73 |
| Escherichia coli ECOR27 | 0.14 | NOLOHH_08040 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.60 | 65 |
| Escherichia fergusonii Becca | 0.14 | EFB2_00263 | | Periplasmic dipeptide transport protein | 0.42 | EFB2_03169 | | Replication-associated recombination protein A | low | > 86 |
| Escherichia coli BL21 | 0.14 | ECD_03395 | | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor | 0.42 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | low | > 61 |
| Escherichia coli Nissle 1917 | 0.14 | ECOLIN_RS20280 | | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | low | > 55 |
| Escherichia coli ECOR38 | 0.14 | HEPCGN_01935 | gsiB | glutathione ABC transporter substrate-binding protein GsiB | 0.42 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | low | > 87 |
| Escherichia coli ECRC99 | 0.14 | KEDOAH_12050 | dppA | dipeptide ABC transporter substrate-binding protein DppA | 0.42 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | — | — |
| Klebsiella michiganensis M5al | 0.14 | BWI76_RS26885 | | ABC transporter substrate-binding protein | 0.43 | BWI76_RS09670 | | recombination factor protein RarA | low | > 92 |
| Ralstonia sp. UNC404CL21Col | 0.14 | ABZR87_RS11710 | | glutathione ABC transporter substrate-binding protein GsiB | 0.43 | ABZR87_RS16030 | | replication-associated recombination protein A | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.14 | HER17_RS00220 | | ABC transporter substrate-binding protein | 0.40 | HER17_RS12345 | | replication-associated recombination protein A | low | > 75 |
| Ralstonia solanacearum PSI07 | 0.14 | RPSI07_RS17235 | | glutathione ABC transporter substrate-binding protein GsiB | 0.44 | RPSI07_RS13205 | | replication-associated recombination protein A | low | > 81 |
| Azospirillum sp. SherDot2 | 0.14 | MPMX19_02825 | | Oligopeptide-binding protein AppA | 0.41 | MPMX19_01528 | | Replication-associated recombination protein A | low | > 112 |
| Ralstonia solanacearum UW163 | 0.13 | UW163_RS13575 | | glutathione ABC transporter substrate-binding protein GsiB | 0.43 | UW163_RS09525 | | replication-associated recombination protein A | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.13 | RALBFv3_RS00245 | | glutathione ABC transporter substrate-binding protein GsiB | 0.43 | RALBFv3_RS04145 | | replication-associated recombination protein A | low | > 76 |
| Dickeya dianthicola ME23 | 0.13 | DZA65_RS21920 | | ABC transporter substrate-binding protein | 0.41 | DZA65_RS09930 | | replication-associated recombination protein A | low | > 75 |
| Enterobacter asburiae PDN3 | 0.13 | EX28DRAFT_2134 | | ABC-type dipeptide transport system, periplasmic component | 0.42 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.13 | HGI48_RS20925 | | ABC transporter substrate-binding protein | 0.41 | HGI48_RS09620 | | replication-associated recombination protein A | low | > 71 |
| Dickeya dadantii 3937 | 0.13 | DDA3937_RS00460 | | ABC transporter substrate-binding protein | 0.41 | DDA3937_RS09605 | | replication-associated recombination protein A | low | > 74 |
| Enterobacter sp. TBS_079 | 0.13 | MPMX20_00190 | | Periplasmic dipeptide transport protein | 0.41 | MPMX20_01554 | | Replication-associated recombination protein A | low | > 85 |
| Pseudomonas fluorescens SBW25 | 0.13 | PFLU_RS10915 | | ABC transporter substrate-binding protein | 0.43 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Pantoea sp. MT58 | 0.13 | IAI47_18650 | | ABC transporter substrate-binding protein | 0.41 | IAI47_12900 | | replication-associated recombination protein A | low | > 76 |
| Pseudomonas fluorescens SBW25-INTG | 0.13 | PFLU_RS10915 | | ABC transporter substrate-binding protein | 0.43 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Rahnella sp. WP5 | 0.13 | EX31_RS10140 | | glycosyl transferase | 0.41 | EX31_RS18515 | | replication-associated recombination protein A | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.13 | HSERO_RS09195 | | glutathione ABC transporter substrate-binding protein GsiB | 0.43 | HSERO_RS09515 | | ATPase AAA | low | > 78 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_00475 | | ABC transporter substrate-binding protein | 0.42 | IAI46_08570 | | replication-associated recombination protein A | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.13 | LU632_RS11510 | | peptide ABC transporter substrate-binding protein | 0.41 | LU632_RS09755 | | replication-associated recombination protein A | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.13 | RR42_RS21350 | | peptide ABC transporter substrate-binding protein | 0.43 | RR42_RS04355 | | recombination factor protein RarA | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.13 | RS_RS06920 | | glutathione ABC transporter substrate-binding protein GsiB | 0.42 | RS_RS11735 | | replication-associated recombination protein A | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.13 | AO353_05390 | | peptide ABC transporter substrate-binding protein | 0.43 | AO353_27640 | | recombination factor protein RarA | low | > 101 |
| Pseudomonas sp. S08-1 | 0.13 | OH686_08700 | | Dipeptide ABC transporter, substrate-binding protein DppA | 0.45 | OH686_00270 | | Replication-associated recombination protein RarA | low | > 80 |
| Variovorax sp. SCN45 | 0.13 | GFF1214 | | Oligopeptide transport substrate-binding protein @ Glutathione ABC transporter, substrate-binding protein GsiB | 0.46 | GFF6034 | | Replication-associated recombination protein RarA | low | > 127 |
| Variovorax sp. OAS795 | 0.13 | ABID97_RS15405 | | glutathione ABC transporter substrate-binding protein GsiB | 0.46 | ABID97_RS07835 | | replication-associated recombination protein A | 0.30 | 72 |
| Rhodospirillum rubrum S1H | 0.13 | Rru_A0592 | | extracellular solute-binding protein, family 5 (NCBI) | 0.39 | Rru_A2660 | | AAA ATPase, central region (NCBI) | low | > 58 |
| Pseudomonas fluorescens FW300-N2C3 | 0.12 | AO356_07240 | | peptide ABC transporter substrate-binding protein | 0.43 | AO356_22185 | | recombination factor protein RarA | low | > 104 |
| Pseudomonas putida KT2440 | 0.12 | PP_0882 | | dipeptide ABC transporter - periplasmic binding protein | 0.43 | PP_4002 | | DNA-dependent ATPase required for recombination | low | > 96 |
| Phaeobacter inhibens DSM 17395 | 0.12 | PGA1_262p00300 | | ABC transporter, extracellular solute-binding protein | 0.40 | PGA1_c01930 | | replication-associated recombination protein A | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.12 | Pf6N2E2_3310 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.43 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.12 | Psyr_4238 | | extracellular solute-binding protein, family 5 | 0.43 | Psyr_3177 | | Recombination protein MgsA | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.12 | CSW01_08445 | | ABC transporter substrate-binding protein | 0.41 | CSW01_05630 | | replication-associated recombination protein A | low | > 62 |
| Pseudomonas fluorescens FW300-N1B4 | 0.12 | Pf1N1B4_1120 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.43 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.12 | Psyr_4238 | | extracellular solute-binding protein, family 5 | 0.43 | Psyr_3177 | | Recombination protein MgsA | low | > 86 |
| Pseudomonas sp. RS175 | 0.12 | PFR28_00131 | | Periplasmic dipeptide transport protein | 0.43 | PFR28_02606 | | Replication-associated recombination protein A | low | > 88 |
| Bosea sp. OAE506 | 0.12 | ABIE41_RS16715 | | ABC transporter substrate-binding protein | 0.38 | ABIE41_RS14690 | | replication-associated recombination protein A | low | > 77 |
| Azospirillum brasilense Sp245 | 0.12 | AZOBR_RS29500 | | peptide ABC transporter substrate-binding protein | 0.40 | AZOBR_RS06885 | | ATPase AAA | low | > 97 |
| Pseudomonas fluorescens GW456-L13 | 0.12 | PfGW456L13_5054 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | 0.43 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | low | > 87 |
| Rhodopseudomonas palustris CGA009 | 0.12 | TX73_012035 | | ABC transporter substrate-binding protein | 0.40 | TX73_016655 | | replication-associated recombination protein A | low | > 86 |
| Castellaniella sp019104865 MT123 | 0.12 | ABCV34_RS13515 | | glutathione ABC transporter substrate-binding protein GsiB | 0.44 | ABCV34_RS07220 | | replication-associated recombination protein A | low | > 48 |
| Fusobacterium nucleatum SB010 | 0.12 | HUW76_03515 | | glutathione ABC transporter substrate-binding protein | 0.35 | HUW76_02735 | | replication-associated recombination protein A | low | > 35 |
| Kangiella aquimarina DSM 16071 | 0.12 | B158DRAFT_1047 | | ABC-type dipeptide transport system, periplasmic component | 0.43 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.12 | MIT1002_01141 | | Dipeptide-binding protein | 0.46 | MIT1002_02178 | | Replication-associated recombination protein A | low | > 70 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_2650 | | acetate kinase (RefSeq) | 0.43 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.11 | SO1805 | sapA | peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) | 0.43 | SO2308 | | ATPase, AAA family (NCBI ptt file) | low | > 76 |
| Pseudomonas simiae WCS417 | 0.11 | PS417_11130 | | peptide ABC transporter substrate-binding protein | 0.43 | PS417_16480 | | recombination factor protein RarA | low | > 88 |
| Desulfovibrio vulgaris Miyazaki F | 0.11 | DvMF_0788 | | extracellular solute-binding protein family 5 (RefSeq) | 0.35 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.10 | DVU2084 | appA | oligopeptide-binding protein, putative (TIGR) | 0.34 | DVU1686 | | ATPase, AAA family (TIGR) | low | > 55 |
| Shewanella loihica PV-4 | 0.10 | Shew_2498 | | extracellular solute-binding protein (RefSeq) | 0.43 | Shew_2022 | | recombination factor protein RarA (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.10 | Sama_1235 | | peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) | 0.44 | Sama_1774 | | recombination factor protein RarA (RefSeq) | low | > 62 |
| Dechlorosoma suillum PS | 0.10 | Dsui_2238 | | ABC-type dipeptide transport system, periplasmic component | 0.41 | Dsui_1694 | | AAA ATPase | low | > 51 |
| Bifidobacterium breve UCC2003 | 0.09 | BBR_RS16650 | | ABC transporter substrate-binding protein | 0.41 | BBR_RS17330 | | replication-associated recombination protein A | low | > 34 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.09 | GFF1368 | | Putative gluthatione transporter,solute-binding component | 0.38 | GFF777 | | FIG065221: Holliday junction DNA helicase | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.09 | Ac3H11_4823 | | Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein | 0.45 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | low | > 79 |
| Dinoroseobacter shibae DFL-12 | 0.08 | Dshi_2595 | | extracellular solute-binding protein family 5 (RefSeq) | 0.38 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | low | > 64 |
| Magnetospirillum magneticum AMB-1 | 0.07 | AMB_RS09980 | | peptide ABC transporter | 0.38 | AMB_RS17620 | | replication-associated recombination protein A | low | > 64 |
Not shown: 1 genomes with orthologs for CA265_RS01030 only; 21 genomes with orthologs for CA265_RS22400 only