| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pontibacter actiniarum KMM 6156, DSM 19842 | 1.0 | CA264_03655 | | multidrug efflux RND transporter permease subunit | 1.0 | CA264_03650 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.91 | 1 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.78 | Echvi_3740 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.58 | Echvi_3741 | | RND family efflux transporter, MFP subunit | 0.98 | 1 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.62 | ABZR88_RS03050 | | efflux RND transporter permease subunit | 0.44 | ABZR88_RS03045 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.44 | DVU0061 | | multidrug resistance protein, putative (TIGR) | 0.21 | DVU3247 | | efflux transporter, RND family, MFP subunit (TIGR) | low | > 55 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_07370 | | RND efflux system, inner membrane transporter | 0.22 | OH686_01010 | | Multidrug efflux system, membrane fusion component | low | > 80 |
| Shewanella loihica PV-4 | 0.43 | Shew_1164 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.23 | Shew_3797 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 60 |
| Desulfovibrio vulgaris Miyazaki F | 0.42 | DvMF_2163 | | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) | 0.21 | DvMF_0035 | | efflux transporter, RND family, MFP subunit (RefSeq) | low | > 51 |
| Dechlorosoma suillum PS | 0.42 | Dsui_1871 | | hydrophobe/amphiphile efflux-1 (HAE1) family transporter | 0.21 | Dsui_2025 | | RND family efflux transporter, MFP subunit | low | > 51 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_933 | | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family | 0.20 | HP15_932 | | efflux transporter, RND family, MFP subunit | low | > 73 |
| Variovorax sp. SCN45 | 0.40 | GFF429 | | RND efflux system, inner membrane transporter | 0.22 | GFF430 | | RND efflux system, membrane fusion protein | low | > 127 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS17350 | | efflux RND transporter permease subunit | 0.21 | ABID97_RS17355 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | 61 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS20105 | | efflux RND transporter permease subunit | 0.21 | QEN71_RS03450 | | efflux RND transporter periplasmic adaptor subunit | low | > 153 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1794.1 | | RND efflux system, inner membrane transporter CmeB | 0.23 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.39 | SMa1662 | | Cation/multidrug efflux pump | 0.23 | SMc03972 | | multidrug efflux system transmembrane protein | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.39 | AMB_RS17325 | | multidrug efflux RND transporter permease subunit | 0.23 | AMB_RS09485 | | efflux RND transporter periplasmic adaptor subunit | low | > 64 |
| Azospirillum sp. SherDot2 | 0.39 | MPMX19_05884 | | Multidrug efflux pump subunit AcrB | 0.22 | MPMX19_05883 | | Multidrug resistance protein MexA | low | > 112 |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_2144 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.23 | Psest_2145 | | RND family efflux transporter, MFP subunit | 0.45 | 1 |
| Rhizobium sp. OAE497 | 0.39 | ABIE40_RS14875 | | multidrug efflux RND transporter permease subunit | 0.22 | ABIE40_RS14880 | | efflux RND transporter periplasmic adaptor subunit | low | > 107 |
| Rhodanobacter denitrificans FW104-10B01 | 0.39 | LRK54_RS08140 | | multidrug efflux RND transporter permease subunit | 0.17 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | low | > 59 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.23 | Psyr_2283 | | Secretion protein HlyD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.23 | Psyr_2283 | | Secretion protein HlyD | 0.47 | 19 |
| Phocaeicola vulgatus CL09T03C04 | 0.39 | HMPREF1058_RS00675 | | efflux RND transporter permease subunit | 0.22 | HMPREF1058_RS02105 | | efflux RND transporter periplasmic adaptor subunit | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.39 | ABI39_RS08280 | | efflux RND transporter permease subunit | 0.23 | ABI39_RS01290 | | efflux RND transporter periplasmic adaptor subunit | low | > 72 |
| Rhodanobacter denitrificans MT42 | 0.39 | LRK55_RS07890 | | efflux RND transporter permease subunit | 0.17 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | 0.65 | 29 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS14260 | | efflux RND transporter permease subunit | 0.21 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS14260 | | efflux RND transporter permease subunit | 0.21 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | 0.17 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.97 | 1 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | 0.17 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.85 | 3 |
| Pseudomonas sp. RS175 | 0.38 | PFR28_00631 | | putative efflux pump membrane transporter TtgB | 0.20 | PFR28_00632 | | putative efflux pump periplasmic linker TtgA | 0.92 | 1 |
| Pseudomonas fluorescens FW300-N2C3 | 0.38 | AO356_27605 | | transporter | 0.22 | AO356_04875 | | antibiotic transporter | low | > 104 |
| Pseudomonas simiae WCS417 | 0.38 | PS417_13190 | | transporter | 0.22 | PS417_12590 | | RND transporter | — | — |
| Pseudomonas putida KT2440 | 0.38 | PP_3426 | | Multidrug efflux RND transporter MexF | 0.20 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | low | > 96 |
| Azospirillum brasilense Sp245 | 0.38 | AZOBR_RS16485 | | RND transporter | 0.20 | AZOBR_RS30180 | | hemolysin D | low | > 97 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_14955 | oqxB | multidrug efflux RND transporter permease subunit | 0.19 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | low | > 52 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF4379 | | RND efflux system, inner membrane transporter CmeB | 0.20 | GFF3855 | | Multidrug transporter MdtA | low | > 78 |
| Pseudomonas fluorescens FW300-N2E2 | 0.38 | Pf6N2E2_1949 | | RND efflux system, inner membrane transporter CmeB | 0.22 | Pf6N2E2_221 | | RND efflux system, membrane fusion protein CmeA | low | > 103 |
| Rhodospirillum rubrum S1H | 0.38 | Rru_A0886 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | 0.23 | Rru_A2050 | | Secretion protein HlyD (NCBI) | low | > 58 |
| Escherichia coli BL21 | 0.38 | ECD_00413 | | multidrug efflux system protein | 0.23 | ECD_03361 | | anaerobic multidrug efflux transporter, ArcA-regulated | low | > 60 |
| Enterobacter asburiae PDN3 | 0.38 | EX28DRAFT_2496 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.22 | EX28DRAFT_3318 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Escherichia coli ECRC62 | 0.38 | BNILDI_22555 | acrB | efflux RND transporter permease AcrB | 0.23 | BNILDI_03310 | mdtE | multidrug transporter subunit MdtE | — | — |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_06820 | acrB | efflux RND transporter permease AcrB | 0.23 | HEPCGN_15185 | mdtE | multidrug transporter subunit MdtE | low | > 85 |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_01140 | acrB | efflux RND transporter permease AcrB | 0.23 | NOLOHH_08245 | mdtE | multidrug transporter subunit MdtE | 0.70 | 6 |
| Escherichia fergusonii Becca | 0.38 | EFB2_03596 | | Multidrug efflux pump subunit AcrB | 0.23 | EFB2_00295 | | Multidrug resistance protein MdtE | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.38 | OHPLBJKB_03212 | | Multidrug efflux pump subunit AcrB | 0.23 | OHPLBJKB_00189 | | Multidrug resistance protein MdtE | low | > 73 |
| Escherichia coli BW25113 | 0.38 | b0462 | acrB | multidrug efflux system protein (NCBI) | 0.23 | b3513 | mdtE | multidrug resistance efflux transporter (NCBI) | low | > 76 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS06775 | | multidrug efflux RND transporter permease subunit | 0.21 | BWI76_RS27690 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 92 |
| Escherichia coli ECRC101 | 0.38 | OKFHMN_08205 | acrB | efflux RND transporter permease AcrB | 0.23 | OKFHMN_16280 | mdtE | multidrug transporter subunit MdtE | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_06260 | acrB | efflux RND transporter permease AcrB | 0.23 | NIAGMN_14045 | mdtE | multidrug transporter subunit MdtE | — | — |
| Serratia liquefaciens MT49 | 0.38 | IAI46_16735 | | efflux RND transporter permease subunit | 0.21 | IAI46_12715 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Escherichia coli ECRC101 | 0.38 | MCAODC_27430 | acrB | efflux RND transporter permease AcrB | 0.23 | MCAODC_06795 | mdtE | multidrug transporter subunit MdtE | — | — |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS02750 | | efflux RND transporter permease AcrB | 0.22 | ECOLIN_RS20100 | | multidrug transporter subunit MdtE | low | > 52 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_19760 | acrB | efflux RND transporter permease AcrB | 0.23 | KEDOAH_11865 | mdtE | multidrug transporter subunit MdtE | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_17295 | | multidrug transporter | 0.20 | AO353_23965 | | RND transporter MFP subunit | low | > 101 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS21030 | | multidrug efflux RND transporter permease subunit | 0.22 | RS_RS21035 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_01064 | | Multidrug efflux pump subunit AcrB | 0.21 | MPMX20_04174 | | Multidrug export protein AcrE | low | > 85 |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS19795 | | multidrug efflux RND transporter permease subunit | 0.23 | RALBFv3_RS19790 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS19380 | | multidrug efflux RND transporter permease subunit | 0.23 | UW163_RS19385 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Shewanella amazonensis SB2B | 0.38 | Sama_3554 | | AcrB/AcrD/AcrF family protein (RefSeq) | 0.23 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | 0.99 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.38 | PfGW456L13_4581 | | RND efflux system, inner membrane transporter CmeB | 0.20 | PfGW456L13_3061 | | Multidrug efflux membrane fusion protein MexE | low | > 87 |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS03390 | | multidrug efflux RND transporter permease subunit | 0.23 | RPSI07_RS03395 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_25915 | acrD | multidrug efflux RND transporter permease AcrD | 0.23 | JDDGAC_19910 | mdtE | multidrug transporter subunit MdtE | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.38 | A4249_RS09925 | | multidrug efflux RND transporter permease subunit | 0.18 | A4249_RS09930 | | efflux RND transporter periplasmic adaptor subunit | 0.98 | 2 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS18285 | | efflux RND transporter permease subunit | 0.22 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_4864 | | Multidrug efflux transporter MexF | 0.21 | Pf1N1B4_3247 | | Multidrug efflux RND membrane fusion protein MexC | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_4045 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.23 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.97 | 1 |
| Erwinia tracheiphila SCR3 | 0.37 | LU632_RS18185 | | efflux RND transporter permease subunit | 0.19 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.37 | RR42_RS32420 | | multidrug efflux RND transporter permease subunit | 0.20 | RR42_RS32415 | | hemolysin D | low | > 128 |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS05735 | | multidrug efflux RND transporter permease subunit | 0.23 | DDA3937_RS14125 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Rahnella sp. WP5 | 0.37 | EX31_RS22470 | | multidrug efflux RND transporter permease subunit | 0.24 | EX31_RS13320 | | efflux RND transporter periplasmic adaptor subunit | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_3519 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.19 | Ga0059261_3518 | | RND family efflux transporter, MFP subunit | 0.85 | 2 |
| Bosea sp. OAE506 | 0.37 | ABIE41_RS01595 | | efflux RND transporter permease subunit | 0.20 | ABIE41_RS01600 | | efflux RND transporter periplasmic adaptor subunit | low | > 77 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00689 | | Multidrug resistance protein MexB | 0.22 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | 0.96 | 3 |
| Pantoea sp. MT58 | 0.37 | IAI47_14515 | | multidrug efflux RND transporter permease subunit | 0.22 | IAI47_06875 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS02410 | | acriflavine resistance protein B | 0.24 | HSERO_RS02415 | | hemolysin D | 0.95 | 1 |
| Dickeya dianthicola ME23 | 0.37 | DZA65_RS06115 | | multidrug efflux RND transporter permease subunit | 0.20 | DZA65_RS14785 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Agrobacterium fabrum C58 | 0.37 | Atu2483 | | AcrB/AcrD/AcrF family protein | 0.20 | Atu2550 | | RND multidrug efflux membrane permease | low | > 89 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS04225 | | efflux RND transporter permease subunit | 0.19 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.97 | 1 |
| Dickeya dianthicola 67-19 | 0.37 | HGI48_RS05790 | | multidrug efflux RND transporter permease subunit | 0.20 | HGI48_RS14125 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_02998 | | Efflux pump membrane transporter BepE | 0.23 | MIT1002_00134 | | Acriflavine resistance protein A precursor | low | > 70 |
| Rhodopseudomonas palustris CGA009 | 0.37 | TX73_015325 | | efflux RND transporter permease subunit | 0.21 | TX73_020240 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_0733 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.20 | B158DRAFT_0734 | | RND family efflux transporter, MFP subunit | 0.99 | 1 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS17980 | | multidrug efflux RND transporter permease subunit | 0.20 | ABIE51_RS01055 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Synechococcus elongatus PCC 7942 | 0.36 | Synpcc7942_2369 | acrF | Hydrophobe/amphiphile efflux-1 HAE1 | 0.14 | Synpcc7942_2368 | | Secretion protein HlyD | 0.94 | 1 |
| Bacteroides stercoris CC31F | 0.36 | HMPREF1181_RS14290 | | efflux RND transporter permease subunit | 0.23 | HMPREF1181_RS04580 | | efflux RND transporter periplasmic adaptor subunit | low | > 56 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF3840 | | RND efflux system, inner membrane transporter CmeB | 0.20 | GFF5686 | | RND efflux system, membrane fusion protein CmeA | low | > 90 |
Not shown: 8 genomes with orthologs for CA264_03655 only; 3 genomes with orthologs for CA264_03650 only