Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS17885 in Burkholderia phytofirmans PsJN

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS17885 3-dehydroquinate synthase 0.76 2
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.96 ABIE53_003740 3-dehydroquinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.96 H281DRAFT_05615 3-dehydroquinate synthase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.89 QEN71_RS28035 3-dehydroquinate synthase 0.77 16
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.71 RPSI07_RS10300 3-dehydroquinate synthase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.72 RALBFv3_RS06935 3-dehydroquinate synthase — —
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.72 UW163_RS06680 3-dehydroquinate synthase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.71 RS_RS14880 3-dehydroquinate synthase — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.71 ABZR87_RS02590 3-dehydroquinate synthase 0.55 40
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.75 RR42_RS19005 3-dehydroquinate synthase 0.82 15
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.57 OH686_10015 3-dehydroquinate synthase — —
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.58 PP_5078 3-dehydroquinate synthase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.52 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) 0.98 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.54 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.54 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.54 PFR28_05013 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.56 AO356_09385 3-dehydroquinate synthase — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.57 PS417_01985 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.57 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.57 PFLU_RS02030 3-dehydroquinate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.50 CSW01_13300 3-dehydroquinate synthase low > 62
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.55 HP15_480 3-dehydroquinate synthase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) 0.65 63
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.58 ABCV34_RS12705 3-dehydroquinate synthase — —
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.54 Psest_3713 3-dehydroquinate synthase — —
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.53 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) 0.97 2
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.55 AO353_12505 3-dehydroquinate synthase — —
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.55 Sama_3367 3-dehydroquinate synthase (RefSeq) 0.95 1
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.50 IAI47_01895 3-dehydroquinate synthase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.51 Shew_0214 3-dehydroquinate synthase (RefSeq) 0.97 1
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.50 b3389 aroB 3-dehydroquinate synthase (NCBI) 0.99 1
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.51 ECD_03241 3-dehydroquinate synthase 0.87 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.51 OHPLBJKB_00314 3-dehydroquinate synthase low > 73
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.51 NOLOHH_08905 aroB 3-dehydroquinate synthase 0.96 1
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.51 BNILDI_02615 aroB 3-dehydroquinate synthase 0.93 14
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.50 HEPCGN_15935 aroB 3-dehydroquinate synthase 0.92 1
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.50 OKFHMN_17115 aroB 3-dehydroquinate synthase 0.98 3
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.50 MCAODC_07645 aroB 3-dehydroquinate synthase 0.95 1
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.50 KEDOAH_11025 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.50 NIAGMN_14885 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.50 JDDGAC_20745 aroB 3-dehydroquinate synthase 0.83 25
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) 0.82 27
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.50 ECOLIN_RS19360 3-dehydroquinate synthase 0.93 1
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.50 EFB2_00439 3-dehydroquinate synthase low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.48 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) 0.63 10
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.49 IAI46_23700 3-dehydroquinate synthase low > 86
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.48 LU632_RS22865 aroB 3-dehydroquinate synthase 0.59 14
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.49 BWI76_RS26085 3-dehydroquinate synthase 0.52 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.48 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) 0.96 2
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.49 MPMX20_04278 3-dehydroquinate synthase 0.91 5
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.61 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.55 MPMX26_02810 3-dehydroquinate synthase — —
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.49 DDA3937_RS19545 3-dehydroquinate synthase — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.48 DZA65_RS20760 3-dehydroquinate synthase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.53 MIT1002_00447 3-dehydroquinate synthase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.48 HGI48_RS19675 3-dehydroquinate synthase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.63 ABID97_RS23255 3-dehydroquinate synthase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.48 HER17_RS01780 3-dehydroquinate synthase 0.90 48
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) 0.65 66
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.42 ABIE51_RS16100 3-dehydroquinate synthase — —
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.44 B158DRAFT_0764 3-dehydroquinate synthase (EC 4.2.3.4) 0.96 1
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.37 TX73_002610 3-dehydroquinate synthase — —
Sinorhizobium meliloti 1021 0.20 SMc02791 shikimate 5-dehydrogenase 0.38 SMc00696 3-dehydroquinate synthase — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.40 Synpcc7942_0525 aroB 3-dehydroquinate synthase — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.37 PGA1_c14100 3-dehydroquinate synthase AroB — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.43 Rru_A3741 3-dehydroquinate synthase (NCBI) — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.38 ABIE40_RS17670 3-dehydroquinate synthase — —
Azospirillum sp. SherDot2 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.39 MPMX19_02639 3-dehydroquinate synthase — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase 0.38 AZOBR_RS03220 3-dehydroquinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.40 CCNA_03104 3-dehydroquinate synthase low > 67
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.40 CCNA_03104 3-dehydroquinate synthase 0.94 3
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.22 HMPREF1078_RS04395 3-dehydroquinate synthase — —
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.24 HMPREF1181_RS09265 3-dehydroquinate synthase 0.85 4
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.27 ABZR88_RS05215 3-dehydroquinate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.23 Echvi_0121 3-dehydroquinate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.24 CA264_13105 3-dehydroquinate synthase — —
Magnetospirillum magneticum AMB-1 0.14 AMB_RS23010 shikimate dehydrogenase 0.40 AMB_RS19865 3-dehydroquinate synthase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.30 Rv2538c 3-dehydroquinate synthase AroB — —

Not shown: 11 genomes with orthologs for BPHYT_RS16975 only; 11 genomes with orthologs for BPHYT_RS17885 only