| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS33580 | | geranyltranstransferase | 1.0 | BPHYT_RS17095 | | proline--tRNA ligase | 0.50 | 3 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.96 | H281DRAFT_06016 | | farnesyl-diphosphate synthase | 0.97 | H281DRAFT_06267 | | prolyl-tRNA synthetase | — | — |
| Paraburkholderia graminis OAS925 | 0.95 | ABIE53_004858 | | farnesyl diphosphate synthase | 0.96 | ABIE53_003585 | | prolyl-tRNA synthetase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.86 | QEN71_RS15235 | | polyprenyl synthetase family protein | 0.93 | QEN71_RS27255 | | proline--tRNA ligase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS19130 | | geranyl transferase | 0.79 | HSERO_RS01830 | | prolyl-tRNA synthetase | — | — |
| Dechlorosoma suillum PS | 0.57 | Dsui_3509 | | geranylgeranyl pyrophosphate synthase | 0.66 | Dsui_1324 | | prolyl-tRNA synthetase, family II | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.57 | RR42_RS15010 | | geranyl transferase | 0.80 | RR42_RS17925 | | prolyl-tRNA synthetase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS15640 | | polyprenyl synthetase family protein | 0.75 | ABZR87_RS01795 | | proline--tRNA ligase | — | — |
| Ralstonia solanacearum UW163 | 0.55 | UW163_RS09960 | | (2E,6E)-farnesyl diphosphate synthase | 0.75 | UW163_RS07495 | | proline--tRNA ligase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.55 | RALBFv3_RS03710 | | (2E,6E)-farnesyl diphosphate synthase | 0.75 | RALBFv3_RS06130 | | proline--tRNA ligase | — | — |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS13520 | | polyprenyl synthetase family protein | 0.74 | RPSI07_RS11110 | | proline--tRNA ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS11155 | | polyprenyl synthetase family protein | 0.75 | RS_RS14080 | | proline--tRNA ligase | — | — |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS02230 | | polyprenyl synthetase family protein | 0.64 | ABCV34_RS09825 | | proline--tRNA ligase | — | — |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS06815 | | (2E,6E)-farnesyl diphosphate synthase | 0.58 | ABIE51_RS04435 | | proline--tRNA ligase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_10250 | ispA | geranyl transferase | 0.56 | OKGIIK_11245 | proS | proline--tRNA ligase | — | — |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS23555 | | polyprenyl synthetase family protein | 0.58 | LU632_RS19845 | proS | proline--tRNA ligase | — | — |
| Variovorax sp. SCN45 | 0.47 | GFF6129 | | (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) | 0.67 | GFF2518 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS03365 | | polyprenyl synthetase family protein | 0.55 | LRK54_RS04360 | | proline--tRNA ligase | — | — |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS03115 | | polyprenyl synthetase family protein | 0.55 | LRK55_RS04135 | | proline--tRNA ligase | — | — |
| Acidovorax sp. GW101-3H11 | 0.45 | Ac3H11_3565 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.68 | Ac3H11_4773 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS09275 | | polyprenyl synthetase family protein | 0.67 | ABID97_RS23385 | | proline--tRNA ligase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21690 | | farnesyl diphosphate synthase | 0.55 | ABZR86_RS10525 | | proline--tRNA ligase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1890.1 | | hypothetical protein | 0.55 | Xcc-8004.4459.1 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Marinobacter adhaerens HP15 | 0.44 | HP15_581 | | geranyltranstransferase | 0.58 | HP15_2058 | | prolyl-tRNA synthetase | — | — |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_1919 | | farnesyl-diphosphate synthase (EC 2.5.1.10) | 0.59 | B158DRAFT_1117 | | prolyl-tRNA synthetase (EC 6.1.1.15) | — | — |
| Pseudomonas sp. S08-1 | 0.44 | OH686_15785 | | (2E,6E)-farnesyl diphosphate synthase | 0.59 | OH686_19070 | | proline--tRNA ligase | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_0528 | | farnesyl diphosphate synthase | 0.60 | PP_1205 | | Proline--tRNA ligase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1326 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) | 0.60 | PfGW456L13_4646 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_06650 | | geranyl transferase | 0.60 | AO353_16920 | | proline--tRNA ligase | — | — |
| Shewanella loihica PV-4 | 0.42 | Shew_2770 | | polyprenyl synthetase (RefSeq) | 0.57 | Shew_2596 | | prolyl-tRNA synthetase (RefSeq) | — | — |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_0642 | | Geranylgeranyl pyrophosphate synthase | 0.60 | Psest_1487 | | prolyl-tRNA synthetase, family II | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2662 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.60 | Pf1N1B4_3167 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4933 | | Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.60 | Pf6N2E2_2972 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Pantoea sp. MT58 | 0.41 | IAI47_14735 | | (2E,6E)-farnesyl diphosphate synthase | 0.58 | IAI47_15410 | | proline--tRNA ligase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF5576 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.66 | GFF1271 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Pseudomonas sp. RS175 | 0.41 | PFR28_03936 | | Farnesyl diphosphate synthase | 0.60 | PFR28_00494 | | Proline--tRNA ligase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0605 | | farnesyl-diphosphate synthase | 0.59 | Psyr_1399 | | Prolyl-tRNA synthetase, bacterial | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0605 | | farnesyl-diphosphate synthase | 0.59 | Psyr_1399 | | Prolyl-tRNA synthetase, bacterial | — | — |
| Shewanella oneidensis MR-1 | 0.41 | SO1526 | ispA | geranyltranstransferase (NCBI ptt file) | 0.57 | SO3154 | proS | prolyl-tRNA synthetase (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_2435 | | geranyltranstransferase (RefSeq) | 0.56 | Sama_1161 | | prolyl-tRNA synthetase (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_14995 | | geranyl transferase | 0.60 | AO356_05560 | | proline--tRNA ligase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_04565 | | (2E,6E)-farnesyl diphosphate synthase | 0.56 | CSW01_04500 | | proline--tRNA ligase | — | — |
| Rahnella sp. WP5 | 0.40 | EX31_RS22160 | | (2E,6E)-farnesyl diphosphate synthase | 0.58 | EX31_RS12905 | | proline--tRNA ligase | — | — |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_01012 | | Farnesyl diphosphate synthase | 0.59 | MPMX20_00878 | | Proline--tRNA ligase | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS06385 | | (2E,6E)-farnesyl diphosphate synthase | 0.59 | BWI76_RS05340 | | proline--tRNA ligase | — | — |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS15930 | | (2E,6E)-farnesyl diphosphate synthase | 0.57 | HER17_RS04355 | | proline--tRNA ligase | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_2550 | | Geranylgeranyl pyrophosphate synthase | 0.58 | EX28DRAFT_3782 | | prolyl-tRNA synthetase (EC 6.1.1.15) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF4325 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) | 0.59 | GFF26 | | Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type | — | — |
| Pseudomonas simiae WCS417 | 0.38 | PS417_25200 | | geranyl transferase | 0.60 | PS417_22820 | | proline--tRNA ligase | — | — |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_08415 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | OKFHMN_10075 | proS | proline--tRNA ligase | — | — |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_12070 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | JDDGAC_13670 | proS | proline--tRNA ligase | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_27640 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | MCAODC_00590 | proS | proline--tRNA ligase | — | — |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_19550 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | KEDOAH_18080 | proS | proline--tRNA ligase | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_06470 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | NIAGMN_07925 | proS | proline--tRNA ligase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.38 | OHPLBJKB_03255 | | Farnesyl diphosphate synthase | 0.59 | OHPLBJKB_03467 | | Proline--tRNA ligase | — | — |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS26840 | | hypothetical protein | 0.60 | PFLU_RS24480 | | proline--tRNA ligase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS26840 | | hypothetical protein | 0.60 | PFLU_RS24480 | | proline--tRNA ligase | — | — |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS02540 | | (2E,6E)-farnesyl diphosphate synthase | 0.59 | ECOLIN_RS01070 | | proline--tRNA ligase | — | — |
| Escherichia coli ECRC62 | 0.38 | BNILDI_22780 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | BNILDI_09250 | proS | proline--tRNA ligase | — | — |
| Escherichia coli BW25113 | 0.38 | b0421 | ispA | geranyltranstransferase (NCBI) | 0.58 | b0194 | proS | prolyl-tRNA synthetase (NCBI) | — | — |
| Escherichia fergusonii Becca | 0.38 | EFB2_03636 | | Farnesyl diphosphate synthase | 0.59 | EFB2_03849 | | Proline--tRNA ligase | — | — |
| Escherichia coli BL21 | 0.38 | ECD_00369 | | geranyltranstransferase | 0.59 | ECD_00193 | | prolyl-tRNA synthetase | — | — |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_07045 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | HEPCGN_08015 | proS | proline--tRNA ligase | — | — |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_01365 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.59 | NOLOHH_02420 | proS | proline--tRNA ligase | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_2900 | | farnesyl-diphosphate synthase (RefSeq) | 0.57 | Shewana3_1398 | | prolyl-tRNA synthetase (RefSeq) | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00661 | | Farnesyl diphosphate synthase | 0.58 | MPMX26_02517 | | Proline--tRNA ligase | — | — |
| Dickeya dianthicola 67-19 | 0.37 | HGI48_RS05595 | | (2E,6E)-farnesyl diphosphate synthase | 0.56 | HGI48_RS16940 | | proline--tRNA ligase | — | — |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS05535 | | (2E,6E)-farnesyl diphosphate synthase | 0.55 | DDA3937_RS16870 | | proline--tRNA ligase | — | — |
| Dickeya dianthicola ME23 | 0.37 | DZA65_RS05920 | | (2E,6E)-farnesyl diphosphate synthase | 0.56 | DZA65_RS18015 | | proline--tRNA ligase | — | — |
| Serratia liquefaciens MT49 | 0.36 | IAI46_04930 | | (2E,6E)-farnesyl diphosphate synthase | 0.58 | IAI46_20100 | | proline--tRNA ligase | — | — |
| Synechococcus elongatus PCC 7942 | 0.34 | Synpcc7942_0776 | crtE | farnesyl-diphosphate synthase | 0.44 | Synpcc7942_1959 | proS | prolyl-tRNA synthetase | — | — |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_02692 | | Farnesyl diphosphate synthase | 0.52 | MIT1002_02773 | | Proline--tRNA ligase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU1349 | SelGGPS | geranylgeranyl diphosphate synthase (TIGR) | 0.49 | DVU1345 | proS | prolyl-tRNA synthetase (TIGR) | — | — |
| Fusobacterium nucleatum SB010 | 0.31 | HUW76_03605 | | polyprenyl synthetase family protein | 0.48 | HUW76_01470 | | proline--tRNA ligase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.29 | DvMF_0125 | | Polyprenyl synthetase (RefSeq) | 0.49 | DvMF_0121 | | prolyl-tRNA synthetase (RefSeq) | — | — |
Not shown: 17 genomes with orthologs for BPHYT_RS33580 only; 2 genomes with orthologs for BPHYT_RS17095 only