Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS14895 in Burkholderia phytofirmans PsJN

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 3
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.91 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.95 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.90 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 18
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.69 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.69 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.69 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.69 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.70 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 32
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.67 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.87 6
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.56 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.96 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.21 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.58 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.56 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.96 3
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.56 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.81 3
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.54 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.56 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.92 2
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.54 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.95 3
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.54 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.54 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.72 2
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.54 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.92 4
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.54 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.97 2
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.54 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.88 6
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.54 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.98 1
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.54 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 2
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.54 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.90 4
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.54 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.54 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.55 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.68 41
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.55 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase 0.73 10
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.54 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.54 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 38
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.51 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.69 1
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.54 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.72 54
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.55 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.55 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 1
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.55 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.53 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.54 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.54 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.52 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.91 39
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.15 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.87 13
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.21 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.83 2
Methanococcus maripaludis S2 0.21 MMP_RS04855 shikimate dehydrogenase 0.25 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis JJ 0.21 MMJJ_RS00280 shikimate dehydrogenase 0.25 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.14 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.20 SMc02791 shikimate 5-dehydrogenase 0.17 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.27 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.15 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.31 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.13 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.12 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Azospirillum sp. SherDot2 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.18 ABIE41_RS04650 shikimate dehydrogenase 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase 0.14 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.26 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase 0.80 27
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.25 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.27 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase 0.79 4
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS12665 shikimate dehydrogenase 0.27 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase 0.71 46
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase — —
Magnetospirillum magneticum AMB-1 0.14 AMB_RS23010 shikimate dehydrogenase 0.15 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.24 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.16 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —

Not shown: 15 genomes with orthologs for BPHYT_RS16975 only; 11 genomes with orthologs for BPHYT_RS14895 only