| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2C3 | 1.0 | AO356_14785 | | ABC-ATPase UvrA | 1.0 | AO356_11635 | | recombinase RecF | 0.77 | 5 |
| Pseudomonas fluorescens FW300-N2E2 | 1.00 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.97 | Pf6N2E2_4197 | | DNA recombination and repair protein RecF | 0.78 | 3 |
| Pseudomonas sp. RS175 | 0.99 | PFR28_03974 | | UvrABC system protein A | 0.99 | PFR28_04593 | | DNA replication and repair protein RecF | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.98 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.99 | Pf1N1B4_1927 | | DNA recombination and repair protein RecF | 0.71 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.97 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.97 | PfGW456L13_664 | | DNA recombination and repair protein RecF | 0.39 | 16 |
| Pseudomonas fluorescens FW300-N2E3 | 0.97 | AO353_06855 | | ABC-ATPase UvrA | 0.98 | AO353_10480 | | recombinase RecF | 0.59 | 9 |
| Pseudomonas simiae WCS417 | 0.97 | PS417_25395 | | excinuclease ABC subunit A | 0.91 | PS417_00015 | | recombinase RecF | 0.59 | 5 |
| Pseudomonas fluorescens SBW25 | 0.97 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.95 | PFLU_RS00015 | | DNA replication/repair protein RecF | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.97 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.95 | PFLU_RS00015 | | DNA replication/repair protein RecF | 0.26 | 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | 0.94 | Psyr_0003 | | DNA replication and repair protein RecF | 0.81 | 5 |
| Pseudomonas syringae pv. syringae B728a | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | 0.94 | Psyr_0003 | | DNA replication and repair protein RecF | 0.68 | 5 |
| Pseudomonas putida KT2440 | 0.93 | PP_0483 | | excinuclease (uvrABC system protein A) | 0.90 | PP_0012 | | DNA replication and repair protein | — | — |
| Pseudomonas sp. S08-1 | 0.92 | OH686_15495 | | excinuclease ABC subunit A | 0.84 | OH686_12620 | | DNA recombination and repair protein RecF | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_3576 | | excinuclease ABC, A subunit | 0.78 | Psest_0004 | | recF protein | 0.85 | 3 |
| Escherichia coli Nissle 1917 | 0.77 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | 0.38 | ECOLIN_RS21310 | | DNA replication/repair protein RecF | low | > 55 |
| Escherichia coli ECRC101 | 0.77 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | 0.38 | MCAODC_05535 | recF | DNA replication/repair protein RecF | low | > 87 |
| Rahnella sp. WP5 | 0.77 | EX31_RS11990 | | excinuclease ABC subunit UvrA | 0.37 | EX31_RS05975 | | DNA replication/repair protein RecF | low | > 89 |
| Escherichia coli ECRC99 | 0.77 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | 0.38 | KEDOAH_13125 | recF | DNA replication/repair protein RecF | — | — |
| Escherichia fergusonii Becca | 0.77 | EFB2_04533 | | UvrABC system protein A | 0.38 | EFB2_00003 | | DNA replication and repair protein RecF | low | > 86 |
| Escherichia coli ECRC102 | 0.77 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | 0.38 | NIAGMN_12780 | recF | DNA replication/repair protein RecF | — | — |
| Escherichia coli ECOR38 | 0.77 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | 0.38 | HEPCGN_13720 | recF | DNA replication/repair protein RecF | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.77 | GFF1429 | | Excinuclease ABC subunit A | 0.37 | GFF1756 | | DNA recombination and repair protein RecF | 0.56 | 21 |
| Escherichia coli ECRC98 | 0.77 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | 0.38 | JDDGAC_18645 | recF | DNA replication/repair protein RecF | low | > 86 |
| Escherichia coli ECOR27 | 0.77 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | 0.38 | NOLOHH_07165 | recF | DNA replication/repair protein RecF | low | > 75 |
| Escherichia coli ECRC62 | 0.77 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | 0.38 | BNILDI_04365 | recF | DNA replication/repair protein RecF | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.77 | OHPLBJKB_03983 | | UvrABC system protein A | 0.38 | OHPLBJKB_00003 | | DNA replication and repair protein RecF | low | > 73 |
| Escherichia coli BW25113 | 0.77 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | 0.38 | b3700 | recF | recombination protein F (NCBI) | 0.78 | 3 |
| Escherichia coli ECRC100 | 0.77 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | 0.38 | OKFHMN_15025 | recF | DNA replication/repair protein RecF | low | > 80 |
| Escherichia coli BL21 | 0.77 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.38 | ECD_03583 | | gap repair protein | 0.80 | 7 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | 0.38 | DZA65_RS00015 | | DNA replication/repair protein RecF | low | > 75 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | 0.38 | HGI48_RS00015 | | DNA replication/repair protein RecF | low | > 71 |
| Dickeya dadantii 3937 | 0.77 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | 0.38 | DDA3937_RS21285 | | DNA replication/repair protein RecF | low | > 74 |
| Klebsiella michiganensis M5al | 0.77 | BWI76_RS01950 | | excinuclease ABC subunit A | 0.36 | BWI76_RS00010 | | DNA replication and repair protein RecF | low | > 92 |
| Marinobacter adhaerens HP15 | 0.77 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | 0.36 | HP15_3705 | | DNA replication and repair protein recF | 0.56 | 23 |
| Enterobacter sp. TBS_079 | 0.77 | MPMX20_00276 | | UvrABC system protein A | 0.37 | MPMX20_00003 | | DNA replication and repair protein RecF | 0.43 | 26 |
| Pectobacterium carotovorum WPP14 | 0.76 | HER17_RS03550 | | excinuclease ABC subunit UvrA | 0.38 | HER17_RS00015 | | DNA replication/repair protein RecF | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.76 | MIT1002_00179 | | Excinuclease ABC subunit A | 0.35 | MIT1002_00003 | | DNA replication and repair protein RecF | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.76 | B158DRAFT_0885 | | excinuclease ABC, A subunit | 0.32 | B158DRAFT_0366 | | DNA replication and repair protein RecF | 0.80 | 3 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | 0.37 | EX28DRAFT_3987 | | DNA replication and repair protein RecF | low | > 76 |
| Serratia liquefaciens MT49 | 0.76 | IAI46_22905 | | excinuclease ABC subunit UvrA | 0.38 | IAI46_00015 | | DNA replication/repair protein RecF | 0.53 | 6 |
| Vibrio cholerae E7946 ATCC 55056 | 0.76 | CSW01_02080 | | UvrABC system protein A | 0.37 | CSW01_00065 | | DNA replication and repair protein RecF | low | > 62 |
| Pantoea sp. MT58 | 0.76 | IAI47_17815 | | excinuclease ABC subunit UvrA | 0.37 | IAI47_00015 | | DNA replication/repair protein RecF | low | > 76 |
| Shewanella amazonensis SB2B | 0.75 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | 0.41 | Sama_0015 | recF | recombination protein F (RefSeq) | 0.73 | 2 |
| Shewanella oneidensis MR-1 | 0.75 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.42 | SO0010 | recF | DNA replication and repair protein RecF (NCBI ptt file) | 0.47 | 10 |
| Shewanella sp. ANA-3 | 0.75 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | 0.41 | Shewana3_0011 | recF | recombination protein F (RefSeq) | 0.46 | 19 |
| Erwinia tracheiphila SCR3 | 0.75 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | 0.37 | LU632_RS00015 | recF | DNA replication/repair protein RecF | low | > 74 |
| Shewanella loihica PV-4 | 0.74 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | 0.40 | Shew_0003 | | DNA replication and repair protein RecF (RefSeq) | 0.84 | 7 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | 0.24 | Xcc-8004.4.1 | | DNA recombination and repair protein RecF | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.72 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | 0.27 | ABZR86_RS15145 | | DNA replication/repair protein RecF | 0.88 | 7 |
| Rhodanobacter sp. FW510-T8 | 0.71 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | 0.27 | OKGIIK_15255 | recF | DNA replication/repair protein RecF | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.71 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | 0.28 | LRK54_RS08475 | | DNA replication/repair protein RecF | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.71 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | 0.28 | LRK55_RS08240 | | DNA replication/repair protein RecF | low | > 63 |
| Acinetobacter radioresistens SK82 | 0.69 | MPMX26_02892 | | UvrABC system protein A | 0.29 | MPMX26_00003 | | DNA replication and repair protein RecF | 0.41 | 10 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | 0.11 | Rru_A0003 | | RecF protein (NCBI) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.61 | A4249_RS08575 | | excinuclease ABC subunit UvrA | 0.10 | A4249_RS15360 | | DNA replication/repair protein RecF | low | > 48 |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_014580 | | excinuclease ABC subunit UvrA | 0.11 | TX73_000015 | | DNA replication/repair protein RecF | low | > 86 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_01152 | | UvrABC system protein A | 0.14 | MPMX19_02716 | | DNA replication and repair protein RecF | — | — |
| Dinoroseobacter shibae DFL-12 | 0.61 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | 0.11 | Dshi_3375 | | SMC domain protein (RefSeq) | 0.90 | 3 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | 0.11 | CCNA_00158 | | DNA replication and repair protein recF | low | > 67 |
| Azospirillum brasilense Sp245 | 0.60 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.13 | AZOBR_RS17670 | | recombinase RecF | 0.44 | 51 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | 0.11 | CCNA_00158 | | DNA replication and repair protein recF | 0.83 | 4 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS12410 | | excinuclease ABC subunit UvrA | 0.12 | AMB_RS03285 | | DNA replication and repair protein RecF | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.60 | Ga0059261_0674 | | excinuclease ABC, A subunit | 0.13 | Ga0059261_2727 | | DNA replication and repair protein RecF | — | — |
| Agrobacterium fabrum C58 | 0.59 | Atu1513 | | ABC excinuclease subunit A | 0.15 | Atu0073 | | recF-like protein | 0.56 | 7 |
| Rhizobium sp. OAE497 | 0.59 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | 0.15 | ABIE40_RS00200 | | DNA replication/repair protein RecF | low | > 107 |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS15100 | | excinuclease ABC subunit UvrA | 0.14 | ABIE41_RS04170 | | DNA replication/repair protein RecF | 0.41 | 44 |
| Sinorhizobium meliloti 1021 | 0.59 | SMc01235 | | excinuclease ABC subunit A | 0.13 | SMc02863 | | recombination protein F | 0.73 | 6 |
| Phaeobacter inhibens DSM 17395 | 0.58 | PGA1_c17370 | | uvrABC system protein A | 0.11 | PGA1_c00030 | | DNA replication and repair protein RecF | 0.70 | 6 |
| Mycobacterium tuberculosis H37Rv | 0.55 | Rv1638 | | Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA | 0.11 | Rv0003 | | DNA replication and repair protein RecF (single-strand DNA binding protein) | low | > 58 |
| Bifidobacterium breve UCC2003 | 0.54 | BBR_RS15510 | | excinuclease ABC subunit UvrA | 0.14 | BBR_RS10265 | | DNA replication and repair protein RecF | 0.60 | 6 |
| Fusobacterium nucleatum SB010 | 0.54 | HUW76_06660 | | excinuclease ABC subunit UvrA | 0.18 | HUW76_00025 | | DNA replication/repair protein RecF | — | — |
| Synechococcus elongatus PCC 7942 | 0.54 | Synpcc7942_0848 | uvrA | excinuclease ABC subunit A | 0.09 | Synpcc7942_2250 | recF | recombination protein F | low | > 38 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.51 | Echvi_1138 | | excinuclease ABC, A subunit | 0.18 | Echvi_1156 | | recF protein | 0.87 | 5 |
| Bacteroides ovatus ATCC 8483 | 0.51 | BACOVA_03703 | | excinuclease ABC, A subunit | 0.18 | BACOVA_05088 | | DNA replication and repair protein RecF | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.50 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | 0.17 | BT4255 | | DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) | 0.62 | 23 |
| Phocaeicola dorei CL03T12C01 | 0.50 | ABI39_RS15330 | | excinuclease ABC subunit UvrA | 0.15 | ABI39_RS13135 | | DNA replication and repair protein RecF | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.50 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | 0.18 | HMPREF1078_RS14620 | | DNA replication and repair protein RecF | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.50 | HMPREF1058_RS01735 | | excinuclease ABC subunit UvrA | 0.16 | HMPREF1058_RS17135 | | DNA replication and repair protein RecF | 0.70 | 37 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.50 | CA264_18100 | | ABC-ATPase UvrA | 0.13 | CA264_17475 | | DNA replication and repair protein RecF | 0.48 | 22 |
| Bacteroides stercoris CC31F | 0.49 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | 0.18 | HMPREF1181_RS06185 | | DNA replication and repair protein RecF | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.48 | CA265_RS25080 | | excinuclease ABC subunit A | 0.15 | CA265_RS24760 | | DNA replication and repair protein RecF | 0.89 | 4 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.48 | ABZR88_RS18670 | | excinuclease ABC subunit UvrA | 0.15 | ABZR88_RS21650 | | DNA replication/repair protein RecF | low | > 71 |
Not shown: 21 genomes with orthologs for AO356_14785 only; 1 genomes with orthologs for AO356_11635 only