| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2C3 | 1.0 | AO356_01030 | | hemolysin D | 1.0 | AO356_01750 | | ATP-dependent Clp protease proteolytic subunit | 0.31 | 11 |
| Pseudomonas fluorescens FW300-N2E2 | 0.93 | Pf6N2E2_148 | | Membrane fusion component of tripartite multidrug resistance system | 1.00 | Pf6N2E2_2218 | | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | low | > 103 |
| Pseudomonas sp. RS175 | 0.91 | PFR28_02748 | | Multidrug export protein EmrA | 1.00 | PFR28_01228 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_4001 | | Membrane fusion component of tripartite multidrug resistance system | 0.86 | Pf1N1B4_3945 | | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_27845 | | hemolysin D | 0.98 | AO353_20175 | | ATP-dependent Clp protease proteolytic subunit | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_2605 | | Membrane fusion component of tripartite multidrug resistance system | 0.78 | PfGW456L13_2552 | | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.84 | PFLU_RS18900 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.85 | PFLU_RS19170 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.84 | PFLU_RS18900 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.85 | PFLU_RS19170 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 109 |
| Pseudomonas simiae WCS417 | 0.84 | PS417_16915 | | hemolysin D | 0.85 | PS417_17235 | | Clp protease ClpP | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.79 | Psyr_1730 | | Secretion protein HlyD | 0.97 | Psyr_1747 | | ATP-dependent Clp protease proteolytic subunit ClpP | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.79 | Psyr_1730 | | Secretion protein HlyD | 0.97 | Psyr_1747 | | ATP-dependent Clp protease proteolytic subunit ClpP | low | > 86 |
| Pseudomonas putida KT2440 | 0.72 | PP_3549 | | multidrug efflux transport system - membrane fusion protein | 0.91 | PP_2300 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Rhodanobacter sp. FW510-T8 | 0.58 | OKGIIK_14285 | | Hemolysin D | 0.68 | OKGIIK_08040 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.58 | LRK54_RS07785 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.69 | LRK54_RS16725 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Rhodanobacter denitrificans MT42 | 0.58 | LRK55_RS07515 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.69 | LRK55_RS16450 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.57 | ABZR86_RS14770 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.68 | ABZR86_RS07330 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.55 | Xcc-8004.3525.1 | | Membrane fusion component of tripartite multidrug resistance system | 0.74 | Xcc-8004.4048.1 | | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.51 | QEN71_RS23080 | | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | 0.69 | QEN71_RS21985 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS08090 | | hemolysin D | 0.69 | BPHYT_RS09450 | | ATP-dependent Clp protease proteolytic subunit 2 | — | — |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_002457 | | membrane fusion protein (multidrug efflux system) | 0.70 | ABIE53_002115 | | ATP-dependent Clp protease protease subunit | low | > 113 |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS15700 | | hemolysin D | 0.70 | RALBFv3_RS01350 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS07710 | | efflux RND transporter periplasmic adaptor subunit | 0.73 | ABIE51_RS14155 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 62 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_05108 | | membrane fusion protein, multidrug efflux system | 0.70 | H281DRAFT_00896 | | ATP-dependent Clp protease proteolytic subunit ClpP | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS12825 | | hemolysin D | 0.70 | RR42_RS09020 | | Clp protease ClpP | — | — |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS11230 | | HlyD family secretion protein | 0.71 | ABZR87_RS12795 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS06480 | | hemolysin D | 0.70 | RS_RS08645 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS07310 | | efflux RND transporter periplasmic adaptor subunit | 0.74 | DDA3937_RS05640 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS17655 | | hemolysin D | 0.70 | RPSI07_RS16125 | | ATP-dependent Clp protease proteolytic subunit | low | > 81 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS08725 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.74 | DZA65_RS06010 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Dickeya dianthicola 67-19 | 0.46 | HGI48_RS08130 | | efflux RND transporter periplasmic adaptor subunit | 0.74 | HGI48_RS05685 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Variovorax sp. OAS795 | 0.44 | ABID97_RS20395 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | ABID97_RS17600 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 91 |
| Variovorax sp. SCN45 | 0.44 | GFF4770 | | Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA | 0.66 | GFF489 | | ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_2351 | | Membrane fusion component of tripartite multidrug resistance system | 0.71 | Ac3H11_935 | | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | — | — |
| Rhodospirillum rubrum S1H | 0.42 | Rru_A0859 | | Secretion protein HlyD (NCBI) | 0.63 | Rru_A1550 | | Endopeptidase Clp (NCBI) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3756 | | Membrane fusion component of tripartite multidrug resistance system | 0.70 | GFF4042 | | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS13570 | | hemolysin D | 0.71 | HSERO_RS12915 | | Clp protease proteolytic subunit ClpP | — | — |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS05945 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.66 | ABCV34_RS05135 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_03563 | | Multidrug export protein EmrA | 0.74 | MPMX20_01028 | | ATP-dependent Clp protease proteolytic subunit | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS04465 | | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.75 | HER17_RS15850 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Escherichia coli BW25113 | 0.40 | b2685 | emrA | multidrug efflux system (NCBI) | 0.73 | b0437 | clpP | ATP-dependent Clp protease proteolytic subunit (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.40 | ECD_02540 | | multidrug efflux system | 0.73 | ECD_00388 | | proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases | low | > 61 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS14965 | | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | ECOLIN_RS02625 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 55 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_12620 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | NOLOHH_01270 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 75 |
| Escherichia fergusonii Becca | 0.40 | EFB2_01243 | | Multidrug export protein EmrA | 0.73 | EFB2_03620 | | ATP-dependent Clp protease proteolytic subunit | 0.60 | 7 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_01048 | | Multidrug export protein EmrA | 0.73 | OHPLBJKB_03236 | | ATP-dependent Clp protease proteolytic subunit | low | > 73 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_11180 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | BNILDI_22685 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 75 |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_2768 | | efflux pump membrane protein (multidrug resistance protein A) | 0.73 | EX28DRAFT_2534 | | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP | — | — |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_19975 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | HEPCGN_06950 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 87 |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_24445 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | JDDGAC_11990 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 86 |
| Escherichia coli ECRC101 | 0.39 | MCAODC_11305 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | MCAODC_27560 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 87 |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_07355 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | KEDOAH_19630 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Escherichia coli ECRC100 | 0.39 | OKFHMN_20780 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | OKFHMN_08335 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_18550 | emrA | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.73 | NIAGMN_06390 | clpP | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Rahnella sp. WP5 | 0.39 | EX31_RS13655 | | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.74 | EX31_RS22245 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 89 |
| Serratia liquefaciens MT49 | 0.38 | IAI46_20000 | | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.74 | IAI46_05010 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 86 |
| Klebsiella michiganensis M5al | 0.37 | BWI76_RS22095 | | multidrug export protein EmrA | 0.74 | BWI76_RS06525 | | ATP-dependent Clp protease proteolytic subunit | low | > 92 |
| Pantoea sp. MT58 | 0.37 | IAI47_04500 | | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | 0.74 | IAI47_14655 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.33 | CSW01_07070 | | HlyD family secretion protein | 0.75 | CSW01_09615 | | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP | — | — |
| Rhodopseudomonas palustris CGA009 | 0.33 | TX73_019155 | | efflux RND transporter periplasmic adaptor subunit | 0.63 | TX73_015355 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_02395 | | putative multidrug resistance protein EmrK | 0.71 | MPMX26_00408 | | ATP-dependent Clp protease proteolytic subunit | low | > 36 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_1100 | | secretion protein HlyD family protein (RefSeq) | 0.62 | DvMF_0110 | | ATP-dependent Clp protease, proteolytic subunit ClpP (RefSeq) | low | > 51 |
| Magnetospirillum magneticum AMB-1 | 0.23 | AMB_RS20235 | | HlyD family secretion protein | 0.63 | AMB_RS14045 | | ATP-dependent Clp endopeptidase, proteolytic subunit ClpP | — | — |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS21115 | | HlyD family secretion protein | 0.63 | ABIE40_RS07090 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 107 |
| Caulobacter crescentus NA1000 | 0.21 | CCNA_03830 | | multidrug resistance protein A, efflux pump | 0.61 | CCNA_02041 | | ATP-dependent endopeptidase clp, proteolytic subunit ClpP | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.21 | CCNA_03830 | | multidrug resistance protein A, efflux pump | 0.61 | CCNA_02041 | | ATP-dependent endopeptidase clp, proteolytic subunit ClpP | — | — |
| Shewanella sp. ANA-3 | 0.21 | Shewana3_2225 | | secretion protein HlyD family protein (RefSeq) | 0.75 | Shewana3_2661 | clpP | ATP-dependent Clp protease proteolytic subunit (RefSeq) | low | > 73 |
| Azospirillum sp. SherDot2 | 0.21 | MPMX19_04288 | | Colistin resistance protein EmrA | 0.64 | MPMX19_01548 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS08460 | | HlyD family secretion protein | 0.62 | ABIE41_RS18060 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.21 | CA265_RS21340 | | secretion protein HlyD | 0.47 | CA265_RS04270 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.21 | Ga0059261_4006 | | Multidrug resistance efflux pump | 0.61 | Ga0059261_0094 | | Protease subunit of ATP-dependent Clp proteases | — | — |
| Sinorhizobium meliloti 1021 | 0.20 | SM_b20699 | | protein secretion protein | 0.63 | SMc01903 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.19 | A4249_RS14990 | | HlyD family secretion protein | 0.58 | A4249_RS06490 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Shewanella loihica PV-4 | 0.19 | Shew_3406 | | secretion protein HlyD family protein (RefSeq) | 0.76 | Shew_2508 | clpP | ATP-dependent Clp protease proteolytic subunit (RefSeq) | low | > 60 |
| Ralstonia solanacearum UW163 | 0.18 | UW163_RS07875 | | HlyD family secretion protein | 0.70 | UW163_RS14660 | | ATP-dependent Clp protease proteolytic subunit | — | — |
| Bacteroides ovatus ATCC 8483 | 0.16 | BACOVA_02016 | | auxiliary transport protein, membrane fusion protein (MFP) family protein | 0.49 | BACOVA_00335 | | endopeptidase Clp | — | — |
| Bacteroides stercoris CC31F | 0.16 | HMPREF1181_RS03700 | | HlyD family secretion protein | 0.49 | HMPREF1181_RS07450 | | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.15 | BT1249 | | putative multidrug resistance protein (NCBI ptt file) | 0.49 | BT3842 | | ATP-dependent Clp protease proteolytic subunit 2 (NCBI ptt file) | — | — |
Not shown: 2 genomes with orthologs for AO356_01030 only; 23 genomes with orthologs for AO356_01750 only