| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS04880 | | 5-formyltetrahydrofolate cyclo-ligase | 1.0 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.68 | 19 |
| Ralstonia solanacearum IBSBF1503 | 0.86 | RALBFv3_RS09865 | | 5-formyltetrahydrofolate cyclo-ligase | 0.88 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.86 | UW163_RS03715 | | 5-formyltetrahydrofolate cyclo-ligase | 0.88 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.85 | RPSI07_RS23505 | | 5-formyltetrahydrofolate cyclo-ligase | 0.91 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.84 | RS_RS00450 | | 5-formyltetrahydrofolate cyclo-ligase | 0.89 | RS_RS08205 | | RluA family pseudouridine synthase | 0.41 | 33 |
| Cupriavidus basilensis FW507-4G11 | 0.38 | RR42_RS01400 | | 5-formyltetrahydrofolate cyclo-ligase | 0.65 | RR42_RS07590 | | pseudouridine synthase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS28640 | | 5-formyltetrahydrofolate cyclo-ligase | 0.54 | QEN71_RS22215 | | RluA family pseudouridine synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.33 | BPHYT_RS18615 | | 5-formyltetrahydrofolate cyclo-ligase | 0.53 | BPHYT_RS09135 | | ribosomal large subunit pseudouridine synthase D | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.33 | ABIE53_000045 | | 5-formyltetrahydrofolate cyclo-ligase | 0.53 | ABIE53_002062 | | 23S rRNA pseudouridine1911/1915/1917 synthase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.32 | H281DRAFT_05815 | | 5,10-methenyltetrahydrofolate synthetase | 0.53 | H281DRAFT_00848 | | ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS13555 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | ABCV34_RS01885 | | RluA family pseudouridine synthase | — | — |
| Variovorax sp. SCN45 | 0.28 | GFF5164 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.35 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 127 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS06600 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS21420 | | 5-formyltetrahydrofolate cyclo-ligase | 0.44 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Dechlorosoma suillum PS | 0.25 | Dsui_0682 | | 5,10-methenyltetrahydrofolate synthetase | 0.42 | Dsui_2530 | | pseudouridine synthase, RluA family | — | — |
| Magnetospirillum magneticum AMB-1 | 0.23 | AMB_RS16280 | | 5-formyltetrahydrofolate cyclo-ligase | 0.30 | AMB_RS16095 | | RluA family pseudouridine synthase | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.23 | TX73_023120 | | 5-formyltetrahydrofolate cyclo-ligase | 0.28 | TX73_001905 | | RluA family pseudouridine synthase | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.22 | OKGIIK_12225 | | 5-formyltetrahydrofolate cyclo-ligase | 0.37 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.22 | LRK55_RS11395 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.62 | 45 |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS15645 | | 5-formyltetrahydrofolate cyclo-ligase | 0.28 | ABIE40_RS14790 | | RluA family pseudouridine synthase | low | > 107 |
| Rhodanobacter denitrificans FW104-10B01 | 0.21 | LRK54_RS11670 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_2769 | | 5-formyltetrahydrofolate cyclo-ligase (RefSeq) | 0.26 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.20 | ABIE41_RS09445 | | 5-formyltetrahydrofolate cyclo-ligase | 0.28 | ABIE41_RS05635 | | RluA family pseudouridine synthase | low | > 77 |
| Dyella japonica UNC79MFTsu3.2 | 0.19 | ABZR86_RS11995 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Lysobacter sp. OAE881 | 0.19 | ABIE51_RS17355 | | 5-formyltetrahydrofolate cyclo-ligase | 0.37 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 62 |
| Caulobacter crescentus NA1000 | 0.18 | CCNA_03354 | | 5-formyltetrahydrofolate cyclo-ligase | 0.27 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.18 | CCNA_03354 | | 5-formyltetrahydrofolate cyclo-ligase | 0.27 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Shewanella sp. ANA-3 | 0.18 | Shewana3_3506 | | 5-formyltetrahydrofolate cyclo-ligase (RefSeq) | 0.37 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.18 | Shew_3069 | | 5-formyltetrahydrofolate cyclo-ligase (RefSeq) | 0.37 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Pseudomonas fluorescens FW300-N2E3 | 0.17 | AO353_08780 | | 5-formyltetrahydrofolate cyclo-ligase | 0.39 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Azospirillum sp. SherDot2 | 0.17 | MPMX19_00693 | | 5-formyltetrahydrofolate cyclo-ligase | 0.32 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Pseudomonas fluorescens FW300-N2E2 | 0.17 | Pf6N2E2_4476 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.38 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.17 | Xcc-8004.1138.1 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.36 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.16 | B158DRAFT_0528 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | low | > 40 |
| Pectobacterium carotovorum WPP14 | 0.16 | HER17_RS19095 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.16 | PFLU_RS28965 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Dickeya dadantii 3937 | 0.16 | DDA3937_RS02410 | | 5-formyltetrahydrofolate cyclo-ligase | 0.37 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Pseudomonas fluorescens SBW25-INTG | 0.16 | PFLU_RS28965 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.16 | AO356_12990 | | 5-formyltetrahydrofolate cyclo-ligase | 0.39 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.16 | Psest_0170 | | 5,10-methenyltetrahydrofolate synthetase | 0.39 | Psest_0709 | | pseudouridine synthase, RluA family | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.16 | Pf1N1B4_2225 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.38 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas simiae WCS417 | 0.16 | PS417_27305 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Erwinia tracheiphila SCR3 | 0.16 | LU632_RS05860 | | 5-formyltetrahydrofolate cyclo-ligase | 0.37 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Bacteroides stercoris CC31F | 0.16 | HMPREF1181_RS06170 | | 5-formyltetrahydrofolate cyclo-ligase | 0.31 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | low | > 56 |
| Vibrio cholerae E7946 ATCC 55056 | 0.16 | CSW01_12545 | | 5-formyltetrahydrofolate cyclo-ligase | 0.34 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.15 | PfGW456L13_892 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.38 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pantoea sp. MT58 | 0.15 | IAI47_03730 | | 5-formyltetrahydrofolate cyclo-ligase | 0.35 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 76 |
| Rahnella sp. WP5 | 0.15 | EX31_RS21480 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | 27 |
| Pseudomonas syringae pv. syringae B728a | 0.15 | Psyr_0317 | | 5-formyltetrahydrofolate cyclo-ligase | 0.39 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.15 | Psyr_0317 | | 5-formyltetrahydrofolate cyclo-ligase | 0.39 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS00800 | | 5-formyltetrahydrofolate cyclo-ligase | 0.24 | A4249_RS10060 | | RluA family pseudouridine synthase | low | > 48 |
| Pseudomonas sp. S08-1 | 0.15 | OH686_11225 | | 5-formyltetrahydrofolate cyclo-ligase | 0.38 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Parabacteroides merdae CL09T00C40 | 0.15 | HMPREF1078_RS14635 | | 5-formyltetrahydrofolate cyclo-ligase | 0.29 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | low | > 61 |
| Pseudomonas putida KT2440 | 0.15 | PP_5203 | | 5-formyltetrahydrofolate cyclo-ligase | 0.40 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Serratia liquefaciens MT49 | 0.15 | IAI46_20895 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Pseudomonas sp. RS175 | 0.14 | PFR28_04325 | | 5-formyltetrahydrofolate cyclo-ligase | 0.39 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Phocaeicola vulgatus CL09T03C04 | 0.14 | HMPREF1058_RS17145 | | 5-formyltetrahydrofolate cyclo-ligase | 0.32 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.14 | BT4258 | | putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) | 0.30 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | low | > 81 |
| Enterobacter asburiae PDN3 | 0.14 | EX28DRAFT_2964 | | 5,10-methenyltetrahydrofolate synthetase | 0.35 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | low | > 76 |
| Phocaeicola dorei CL03T12C01 | 0.14 | ABI39_RS13145 | | 5-formyltetrahydrofolate cyclo-ligase | 0.32 | ABI39_RS02845 | | RluA family pseudouridine synthase | low | > 72 |
| Escherichia coli ECOR27 | 0.14 | NOLOHH_11395 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli ECRC99 | 0.14 | KEDOAH_08655 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC102 | 0.14 | NIAGMN_17250 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC62 | 0.14 | BNILDI_09930 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Escherichia coli ECRC101 | 0.14 | MCAODC_10005 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Escherichia coli ECRC100 | 0.14 | OKFHMN_19485 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.75 | 69 |
| Escherichia coli ECRC98 | 0.14 | JDDGAC_23125 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Enterobacter sp. TBS_079 | 0.14 | MPMX20_03770 | | 5-formyltetrahydrofolate cyclo-ligase | 0.35 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | low | > 85 |
| Escherichia fergusonii Becca | 0.14 | EFB2_00991 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.14 | GFF3012 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.36 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 78 |
| Klebsiella michiganensis M5al | 0.13 | BWI76_RS23915 | | 5-formyltetrahydrofolate cyclo-ligase | 0.35 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | low | > 92 |
| Escherichia coli Nissle 1917 | 0.13 | ECOLIN_RS16205 | | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Marinobacter adhaerens HP15 | 0.13 | HP15_3211 | | 5-formyltetrahydrofolate cyclo-ligase | 0.40 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Escherichia coli ECOR38 | 0.13 | HEPCGN_18775 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.36 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.12 | CA264_15880 | | 5-formyltetrahydrofolate cyclo-ligase | 0.29 | CA264_15205 | | RNA pseudouridine synthase | low | > 74 |
Not shown: 5 genomes with orthologs for ABZR87_RS04880 only; 21 genomes with orthologs for ABZR87_RS13315 only