Conservation of cofitness between ABZR87_RS12630 and ABZR87_RS10245 in Ralstonia sp. UNC404CL21Col

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS12630 protein adenylyltransferase SelO 1.0 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.55 7
Ralstonia solanacearum PSI07 0.86 RPSI07_RS16295 YdiU family protein 0.89 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum GMI1000 0.86 RS_RS08830 YdiU family protein 0.88 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum IBSBF1503 0.85 RALBFv3_RS01180 YdiU family protein 0.89 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Ralstonia solanacearum UW163 0.85 UW163_RS14490 YdiU family protein 0.89 UW163_RS11990 excinuclease ABC subunit UvrC — —
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS11160 hypothetical protein 0.78 RR42_RS14000 excinuclease ABC subunit C low > 128
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS21900 YdiU family protein 0.69 QEN71_RS04665 excinuclease ABC subunit UvrC low > 153
Paraburkholderia graminis OAS925 0.56 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) 0.68 ABIE53_003025 excinuclease ABC subunit C low > 113
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS09550 hypothetical protein 0.36 BPHYT_RS14320 UvrABC system protein C low > 109
Acidovorax sp. GW101-3H11 0.52 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs 0.59 Ac3H11_373 Excinuclease ABC subunit C low > 79
Variovorax sp. SCN45 0.51 GFF1330 UPF0061 protein YdiU 0.60 GFF2859 Excinuclease ABC subunit C low > 127
Variovorax sp. OAS795 0.50 ABID97_RS15700 protein adenylyltransferase SelO 0.60 ABID97_RS10635 excinuclease ABC subunit UvrC low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4580 Selenoprotein O and cysteine-containing homologs 0.59 GFF3847 Excinuclease ABC subunit C — —
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS11220 hypothetical protein 0.68 HSERO_RS09690 excinuclease ABC subunit C low > 78
Pseudomonas sp. RS175 0.42 PFR28_05043 Protein adenylyltransferase SelO 0.39 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas putida KT2440 0.41 PP_5068 conserved protein of unknown function, UPF0061 family 0.42 PP_4098 UvrABC system protein C low > 96
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS02195 YdiU family protein 0.41 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS02195 YdiU family protein 0.41 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_09050 hypothetical protein 0.40 AO356_00350 excinuclease ABC subunit C low > 104
Pseudomonas simiae WCS417 0.40 PS417_02140 hypothetical protein 0.40 PS417_10725 excinuclease ABC subunit C low > 88
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_12770 hypothetical protein 0.40 AO353_21835 excinuclease ABC subunit C low > 101
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs 0.40 Pf1N1B4_5618 Excinuclease ABC subunit C low > 87
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs 0.39 Pf6N2E2_2021 Excinuclease ABC subunit C low > 103
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs 0.40 PfGW456L13_2886 Excinuclease ABC subunit C low > 87
Pseudomonas sp. S08-1 0.39 OH686_09805 UPF0061 protein YdiU 0.40 OH686_00340 excinuclease ABC subunit C low > 80
Pectobacterium carotovorum WPP14 0.39 HER17_RS08850 YdiU family protein 0.38 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_09655 SELO family protein 0.38 CSW01_06140 excinuclease ABC subunit C low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0494 Protein of unknown function UPF0061 0.41 Psyr_2896 Excinuclease ABC subunit C low > 86
Escherichia coli ECOR38 0.39 HEPCGN_05490 selO protein adenylyltransferase SelO 0.41 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 87
Castellaniella sp019104865 MT123 0.39 ABCV34_RS04315 YdiU family protein 0.56 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0494 Protein of unknown function UPF0061 0.41 Psyr_2896 Excinuclease ABC subunit C low > 86
Escherichia coli BL21 0.39 ECD_01675 UPF0061 family protein 0.41 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 61
Klebsiella michiganensis M5al 0.39 BWI76_RS17085 hypothetical protein 0.41 BWI76_RS18330 excinuclease ABC subunit C low > 92
Escherichia coli Nissle 1917 0.39 ECOLIN_RS09535 protein adenylyltransferase SelO 0.41 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Escherichia coli ECOR27 0.39 NOLOHH_17645 selO protein adenylyltransferase SelO 0.41 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia fergusonii Becca 0.39 EFB2_02285 Protein adenylyltransferase SelO 0.41 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli BW25113 0.38 b1706 ydiU hypothetical protein (NCBI) 0.41 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) low > 76
Marinobacter adhaerens HP15 0.38 HP15_1144 protein belonging to uncharacterized protein family UPF0061 0.39 HP15_1568 excinuclease ABC subunit C low > 73
Escherichia coli ECRC98 0.38 JDDGAC_01700 selO protein adenylyltransferase SelO 0.41 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF3534 Selenoprotein O and cysteine-containing homologs 0.41 GFF1700 Excinuclease ABC subunit C low > 78
Escherichia coli ECRC99 0.38 KEDOAH_00985 selO protein adenylyltransferase SelO 0.41 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC102 0.38 NIAGMN_00940 selO protein adenylyltransferase SelO 0.41 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC100 0.38 OKFHMN_27125 selO protein adenylyltransferase SelO 0.41 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli ECRC101 0.38 MCAODC_18285 selO protein adenylyltransferase SelO 0.41 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 87
Erwinia tracheiphila SCR3 0.38 LU632_RS10980 YdiU family protein 0.40 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Enterobacter sp. TBS_079 0.37 MPMX20_01907 Protein adenylyltransferase SelO 0.40 MPMX20_02838 UvrABC system protein C low > 85
Pantoea sp. MT58 0.37 IAI47_10920 YdiU family protein 0.40 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Dickeya dadantii 3937 0.37 DDA3937_RS12935 YdiU family protein 0.39 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Dickeya dianthicola ME23 0.37 DZA65_RS13470 YdiU family protein 0.39 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Enterobacter asburiae PDN3 0.37 EX28DRAFT_1713 Uncharacterized conserved protein 0.40 EX28DRAFT_0634 Excinuclease ABC subunit C 0.50 27
Dickeya dianthicola 67-19 0.37 HGI48_RS13010 YdiU family protein 0.39 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Pseudomonas stutzeri RCH2 0.36 Psest_0396 Uncharacterized conserved protein 0.42 Psest_2259 excinuclease ABC, C subunit low > 67
Serratia liquefaciens MT49 0.36 IAI46_11065 YdiU family protein 0.40 IAI46_09210 excinuclease ABC subunit UvrC low > 86
Rahnella sp. WP5 0.36 EX31_RS13970 YdiU family protein 0.39 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Lysobacter sp. OAE881 0.34 ABIE51_RS12255 protein adenylyltransferase SelO 0.40 ABIE51_RS12455 excinuclease ABC subunit UvrC low > 62
Shewanella loihica PV-4 0.34 Shew_0262 hypothetical protein (RefSeq) 0.38 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) low > 60
Sinorhizobium meliloti 1021 0.34 SMc00453 hypothetical protein 0.33 SMc00602 excinuclease ABC subunit C low > 103
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS00335 protein adenylyltransferase SelO 0.42 ABZR86_RS02245 excinuclease ABC subunit UvrC low > 74
Rhizobium sp. OAE497 0.33 ABIE40_RS04755 protein adenylyltransferase SelO 0.32 ABIE40_RS06500 excinuclease ABC subunit UvrC — —
Shewanella oneidensis MR-1 0.33 SO0330 conserved hypothetical protein (NCBI ptt file) 0.38 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) low > 76
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_09030 selO YdiU family protein 0.41 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.2272.1 Selenoprotein O and cysteine-containing homologs 0.40 Xcc-8004.2477.1 Excinuclease ABC subunit C low > 74
Shewanella sp. ANA-3 0.32 Shewana3_3841 hypothetical protein (RefSeq) 0.38 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Rhodopseudomonas palustris CGA009 0.32 TX73_015750 YdiU family protein 0.31 TX73_006010 excinuclease ABC subunit UvrC low > 86
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS15955 YdiU family protein 0.43 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS15710 YdiU family protein 0.43 LRK55_RS00120 excinuclease ABC subunit UvrC low > 63
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_03360 hypothetical protein 0.19 CA264_16350 excinuclease ABC subunit C low > 74
Agrobacterium fabrum C58 0.31 Atu0945 hypothetical protein 0.33 Atu1129 excinuclease ABC chain C low > 89
Dinoroseobacter shibae DFL-12 0.31 Dshi_1157 protein of unknown function UPF0061 (RefSeq) 0.34 Dshi_0644 excinuclease ABC, C subunit (RefSeq) low > 64
Shewanella amazonensis SB2B 0.29 Sama_2755 hypothetical protein (RefSeq) 0.37 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) low > 62
Dechlorosoma suillum PS 0.29 Dsui_1465 hypothetical protein 0.47 Dsui_2470 excinuclease ABC, C subunit low > 51
Phaeobacter inhibens DSM 17395 0.29 PGA1_c11360 Uncharacterized conserved protein 0.32 PGA1_c02880 uvrABC system protein C low > 62
Acinetobacter radioresistens SK82 0.29 MPMX26_02624 Protein adenylyltransferase SelO 0.37 MPMX26_00228 UvrABC system protein C low > 36
Alteromonas macleodii MIT1002 0.17 MIT1002_03272 hypothetical protein 0.39 MIT1002_02153 Excinuclease ABC subunit C low > 70

Not shown: 2 genomes with orthologs for ABZR87_RS12630 only; 26 genomes with orthologs for ABZR87_RS10245 only