Conservation of cofitness between Sama_0857 and Sama_0254 in Shewanella amazonensis SB2B

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) 1.0 Sama_0254 phosphoenolpyruvate carboxylase (RefSeq) 0.89 2
Shewanella oneidensis MR-1 0.89 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) 0.82 SO0274 ppc phosphoenolpyruvate carboxylase (NCBI ptt file) 0.95 2
Shewanella sp. ANA-3 0.89 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) 0.83 Shewana3_3906 phosphoenolpyruvate carboxylase (RefSeq) low > 73
Shewanella loihica PV-4 0.85 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) 0.79 Shew_0200 phosphoenolpyruvate carboxylase (RefSeq) low > 60
Serratia liquefaciens MT49 0.67 IAI46_22345 glutamate synthase large subunit 0.56 IAI46_24525 phosphoenolpyruvate carboxylase 0.72 37
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12030 glutamate synthase large subunit 0.54 CSW01_13390 phosphoenolpyruvate carboxylase low > 62
Rahnella sp. WP5 0.67 EX31_RS12515 glutamate synthase large subunit 0.55 EX31_RS14200 phosphoenolpyruvate carboxylase 0.94 37
Pectobacterium carotovorum WPP14 0.67 HER17_RS19910 glutamate synthase large subunit 0.56 HER17_RS20655 phosphoenolpyruvate carboxylase low > 75
Erwinia tracheiphila SCR3 0.66 LU632_RS21315 gltB glutamate synthase large subunit 0.53 LU632_RS19625 ppc phosphoenolpyruvate carboxylase 0.96 2
Alteromonas macleodii MIT1002 0.66 MIT1002_03139 Glutamate synthase [NADPH] large chain precursor 0.49 MIT1002_03491 Phosphoenolpyruvate carboxylase low > 70
Dickeya dianthicola 67-19 0.66 HGI48_RS01560 glutamate synthase large subunit 0.55 HGI48_RS00850 phosphoenolpyruvate carboxylase 0.98 1
Dickeya dadantii 3937 0.66 DDA3937_RS01665 glutamate synthase large subunit 0.55 DDA3937_RS20360 phosphoenolpyruvate carboxylase 0.97 4
Dickeya dianthicola ME23 0.66 DZA65_RS01635 glutamate synthase large subunit 0.54 DZA65_RS00895 phosphoenolpyruvate carboxylase 0.98 2
Escherichia fergusonii Becca 0.66 EFB2_00611 Glutamate synthase [NADPH] large chain 0.54 EFB2_04658 Phosphoenolpyruvate carboxylase low > 86
Escherichia coli Nissle 1917 0.66 ECOLIN_RS18475 glutamate synthase large subunit 0.54 ECOLIN_RS22835 phosphoenolpyruvate carboxylase low > 55
Escherichia coli ECOR38 0.66 HEPCGN_16760 gltB3 Glutamate synthase domain 3 0.54 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase 0.92 30
Escherichia coli BL21 0.66 ECD_03077 glutamate synthase, large subunit 0.54 ECD_03841 phosphoenolpyruvate carboxylase 0.67 15
Escherichia coli BW25113 0.66 b3212 gltB glutamate synthase, large subunit (NCBI) 0.54 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) low > 76
Escherichia coli ECRC62 0.66 BNILDI_01850 gltB glutamate synthase large subunit 0.54 BNILDI_05785 ppc phosphoenolpyruvate carboxylase 0.91 47
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00488 Glutamate synthase [NADPH] large chain 0.54 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase low > 73
Escherichia coli ECRC101 0.66 MCAODC_08405 gltB glutamate synthase large subunit 0.54 MCAODC_04095 ppc phosphoenolpyruvate carboxylase low > 87
Klebsiella michiganensis M5al 0.66 BWI76_RS25315 glutamate synthase large subunit 0.54 BWI76_RS00835 phosphoenolpyruvate carboxylase 0.61 56
Escherichia coli ECRC100 0.66 OKFHMN_17885 gltB glutamate synthase large subunit 0.54 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase 0.89 53
Escherichia coli ECRC98 0.66 JDDGAC_21510 gltB glutamate synthase large subunit 0.54 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase low > 86
Escherichia coli ECRC102 0.66 NIAGMN_15645 gltB glutamate synthase large subunit 0.54 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECRC99 0.66 KEDOAH_10265 gltB glutamate synthase large subunit 0.54 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECOR27 0.66 NOLOHH_09685 gltB glutamate synthase large subunit 0.54 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase 0.91 31
Enterobacter sp. TBS_079 0.66 MPMX20_04126 Glutamate synthase [NADPH] large chain 0.54 MPMX20_04524 Phosphoenolpyruvate carboxylase 0.72 12
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.54 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3275 Glutamate synthase domain 2 0.54 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 76
Pseudomonas sp. S08-1 0.59 OH686_10005 Glutamate synthase [NADPH] large chain 0.49 OH686_06795 Phosphoenolpyruvate carboxylase low > 80
Pseudomonas stutzeri RCH2 0.58 Psest_3711 Glutamate synthase domain 2 0.51 Psest_1557 Phosphoenolpyruvate carboxylase low > 67
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3752 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.50 Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 103
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09375 glutamate synthase 0.50 AO356_06185 phosphoenolpyruvate carboxylase low > 104
Marinobacter adhaerens HP15 0.58 HP15_482 glutamate synthase subunit alpha 0.50 HP15_795 phosphoenolpyruvate carboxylase — —
Pseudomonas sp. RS175 0.58 PFR28_05015 Glutamate synthase [NADPH] large chain 0.50 PFR28_00368 Phosphoenolpyruvate carboxylase low > 88
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_272 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.50 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12515 glutamate synthase 0.49 AO353_16310 phosphoenolpyruvate carboxylase low > 101
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.50 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.50 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Pseudomonas putida KT2440 0.58 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.49 PP_1505 Phosphoenolpyruvate carboxylase low > 96
Pseudomonas simiae WCS417 0.58 PS417_02000 glutamate synthase 0.50 PS417_06060 phosphoenolpyruvate carboxylase low > 88
Pseudomonas fluorescens SBW25 0.58 PFLU_RS02045 glutamate synthase large subunit 0.50 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS02045 glutamate synthase large subunit 0.50 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.51 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Acinetobacter radioresistens SK82 0.56 MPMX26_02808 Glutamate synthase [NADPH] large chain 0.49 MPMX26_03013 Phosphoenolpyruvate carboxylase 0.69 8
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.44.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.26 Xcc-8004.4314.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 74
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10665 glutamate synthase large subunit 0.22 LRK55_RS11810 phosphoenolpyruvate carboxylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10960 glutamate synthase large subunit 0.22 LRK54_RS12075 phosphoenolpyruvate carboxylase 0.90 3
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16795 glutamate synthase large subunit 0.24 ABZR86_RS11555 phosphoenolpyruvate carboxylase 0.97 2
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0890 glsF glutamate synthase (ferredoxin) 0.22 Synpcc7942_2252 ppc phosphoenolpyruvate carboxylase — —
Azospirillum sp. SherDot2 0.41 MPMX19_02657 Glutamate synthase [NADPH] large chain 0.26 MPMX19_06050 Phosphoenolpyruvate carboxylase 0.85 13
Rhodopseudomonas palustris CGA009 0.41 TX73_004590 glutamate synthase large subunit 0.27 TX73_009115 phosphoenolpyruvate carboxylase — —
Dechlorosoma suillum PS 0.40 Dsui_1096 glutamate synthase family protein 0.25 Dsui_1603 phosphoenolpyruvate carboxylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS08700 glutamate synthase large subunit 0.11 CA265_RS21350 phosphoenolpyruvate carboxylase 0.85 12
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19595 glutamate synthase 0.24 HSERO_RS14670 phosphoenolpyruvate carboxylase 0.64 44
Ralstonia solanacearum GMI1000 0.40 RS_RS14860 glutamate synthase subunit alpha 0.25 RS_RS11840 phosphoenolpyruvate carboxylase 0.59 19
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06905 glutamate synthase large subunit 0.10 ABZR88_RS09465 phosphoenolpyruvate carboxylase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06915 glutamate synthase subunit alpha 0.26 RALBFv3_RS04250 phosphoenolpyruvate carboxylase 0.55 20
Ralstonia solanacearum UW163 0.40 UW163_RS06700 glutamate synthase subunit alpha 0.26 UW163_RS09420 phosphoenolpyruvate carboxylase — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS10320 glutamate synthase subunit alpha 0.26 RPSI07_RS13100 phosphoenolpyruvate carboxylase 0.57 55
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS28010 glutamate synthase-related protein 0.23 QEN71_RS24955 phosphoenolpyruvate carboxylase 0.69 68
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS02570 glutamate synthase-related protein 0.25 ABZR87_RS16140 phosphoenolpyruvate carboxylase 0.52 55
Variovorax sp. OAS795 0.39 ABID97_RS23225 glutamate synthase-related protein 0.23 ABID97_RS08220 phosphoenolpyruvate carboxylase 0.56 15
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_05620 glutamate synthase (NADH) large subunit 0.23 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 0.35 84
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS18990 glutamate synthase 0.24 RR42_RS15905 phosphoenolpyruvate carboxylase 0.44 49
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11150 glutamate synthase-related protein 0.22 ABCV34_RS14805 phosphoenolpyruvate carboxylase low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1327 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.23 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 90
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS17855 glutamate synthase 0.23 BPHYT_RS05225 phosphoenolpyruvate carboxylase 0.73 51
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1800 Glutamate synthase domain 2 0.22 Ga0059261_2719 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) 0.94 2
Variovorax sp. SCN45 0.39 GFF5332 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.22 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 127
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_15200 Glutamate synthase subunit alpha 0.23 OKGIIK_11820 ppc phosphoenolpyruvate carboxylase low > 52
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4710 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.24 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.77 31
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1244 Glutamate synthase domain 2 0.12 Echvi_3727 Phosphoenolpyruvate carboxylase 0.96 2
Caulobacter crescentus NA1000 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.19 CCNA_01560 phosphoenolpyruvate carboxylase 0.92 3
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.19 CCNA_01560 phosphoenolpyruvate carboxylase low > 67
Bifidobacterium breve UCC2003 0.37 BBR_RS15255 glutamate synthase large subunit 0.17 BBR_RS10525 phosphoenolpyruvate carboxylase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS16105 glutamate synthase large subunit 0.23 A4249_RS12510 phosphoenolpyruvate carboxylase low > 48

Not shown: 15 genomes with orthologs for Sama_0857 only; 4 genomes with orthologs for Sama_0254 only