| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT1320 | | putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) | 1.0 | BT4599 | | putative transcriptional regulator (NCBI ptt file) | 0.50 | 10 |
| Bacteroides ovatus ATCC 8483 | 0.91 | BACOVA_00605 | | phosphate transport system regulatory protein PhoU | 0.92 | BACOVA_05396 | | LysR substrate binding domain protein | low | > 94 |
| Bacteroides stercoris CC31F | 0.81 | HMPREF1181_RS10820 | | phosphate signaling complex protein PhoU | 0.80 | HMPREF1181_RS11950 | | LysR family transcriptional regulator | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.73 | ABI39_RS20360 | | phosphate signaling complex protein PhoU | 0.70 | ABI39_RS18875 | | LysR family transcriptional regulator | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.72 | HMPREF1058_RS06565 | | phosphate signaling complex protein PhoU | 0.70 | HMPREF1058_RS04990 | | LysR family transcriptional regulator | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.56 | HMPREF1078_RS17190 | | phosphate signaling complex protein PhoU | 0.57 | HMPREF1078_RS00720 | | LysR family transcriptional regulator | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.36 | CA264_18725 | | phosphate transport system regulatory protein PhoU | 0.34 | CA264_07870 | | LysR family transcriptional regulator | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.24 | RS_RS07690 | | phosphate transport system regulatory protein PhoU | 0.17 | RS_RS05515 | | LysR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS02130 | | phosphate transport system regulatory protein PhoU | 0.18 | RALBFv3_RS14705 | | LysR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS15440 | | phosphate transport system regulatory protein PhoU | 0.18 | UW163_RS12175 | | LysR family transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS15315 | | phosphate transport system regulatory protein PhoU | 0.18 | RPSI07_RS18655 | | LysR family transcriptional regulator | low | > 81 |
| Azospirillum sp. SherDot2 | 0.23 | MPMX19_01281 | | Phosphate-specific transport system accessory protein PhoU | 0.19 | MPMX19_00813 | | HTH-type transcriptional regulator CysL | low | > 112 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS14080 | | phosphate signaling complex protein PhoU | 0.17 | ABZR87_RS10365 | | LysR family transcriptional regulator | low | > 80 |
| Variovorax sp. SCN45 | 0.22 | GFF1096 | | Phosphate transport system regulatory protein PhoU | 0.19 | GFF1740 | | Transcriptional regulator, LysR family | low | > 127 |
| Cupriavidus basilensis FW507-4G11 | 0.22 | RR42_RS13450 | | PhoU family transcriptional regulator | 0.18 | RR42_RS31340 | | transcriptional regulator | low | > 128 |
| Marinobacter adhaerens HP15 | 0.22 | HP15_3385 | | phosphate uptake regulator, PhoU | 0.14 | HP15_2201 | | transcriptional regulator, LysR family | — | — |
| Variovorax sp. OAS795 | 0.22 | ABID97_RS14615 | | phosphate signaling complex protein PhoU | 0.19 | ABID97_RS12840 | | LysR family transcriptional regulator | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.22 | GFF4234 | | Phosphate transport system regulatory protein PhoU | 0.18 | GFF2192 | | Cys regulon transcriptional activator CysB | low | > 90 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.21 | H281DRAFT_04415 | | phosphate uptake regulator, PhoU | 0.21 | H281DRAFT_05209 | | transcriptional regulator, LysR family | low | > 103 |
| Vibrio cholerae E7946 ATCC 55056 | 0.21 | CSW01_03800 | | phosphate transport system regulator PhoU | 0.18 | CSW01_16940 | | LysR family transcriptional regulator | — | — |
| Burkholderia phytofirmans PsJN | 0.21 | BPHYT_RS14125 | | transcriptional regulator | 0.19 | BPHYT_RS07470 | | LysR family transcriptional regulator | — | — |
| Paraburkholderia graminis OAS925 | 0.21 | ABIE53_002991 | | phosphate transport system protein | 0.20 | ABIE53_002341 | | DNA-binding transcriptional LysR family regulator | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.21 | ABCV34_RS02395 | | phosphate signaling complex protein PhoU | 0.17 | ABCV34_RS05920 | | LysR substrate-binding domain-containing protein | — | — |
| Rhodospirillum rubrum S1H | 0.21 | Rru_A0602 | | Phosphate uptake regulator, PhoU (NCBI) | 0.22 | Rru_A0606 | | Transcriptional Regulator, LysR family (NCBI) | — | — |
| Shewanella oneidensis MR-1 | 0.21 | SO1726 | phoU | phosphate transport system regulatory protein PhoU (NCBI ptt file) | 0.16 | SO2561 | | transcriptional regulator, LysR family (NCBI ptt file) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.21 | OKGIIK_06835 | phoU | phosphate signaling complex protein PhoU | 0.17 | OKGIIK_02230 | lysR | LysR family transcriptional regulator | — | — |
| Shewanella sp. ANA-3 | 0.20 | Shewana3_2731 | | transcriptional regulator PhoU (RefSeq) | 0.17 | Shewana3_2367 | | LysR family transcriptional regulator (RefSeq) | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS08185 | | PhoU family transcriptional regulator | 0.17 | AZOBR_RS32560 | | LysR family transcriptional regulator | low | > 97 |
| Rhodanobacter denitrificans FW104-10B01 | 0.20 | LRK54_RS00475 | | phosphate signaling complex protein PhoU | 0.17 | LRK54_RS12835 | | LysR family transcriptional regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.20 | QEN71_RS04840 | | phosphate signaling complex protein PhoU | 0.18 | QEN71_RS23600 | | LysR family transcriptional regulator | low | > 153 |
| Rhodanobacter denitrificans MT42 | 0.20 | LRK55_RS00215 | | phosphate signaling complex protein PhoU | 0.17 | LRK55_RS12535 | | LysR family transcriptional regulator | low | > 63 |
| Pantoea sp. MT58 | 0.20 | IAI47_00215 | | phosphate signaling complex protein PhoU | 0.21 | IAI47_06680 | | LysR family transcriptional regulator | — | — |
| Dechlorosoma suillum PS | 0.20 | Dsui_1573 | | phosphate transport system regulatory protein PhoU | 0.31 | Dsui_2410 | | transcriptional regulator | — | — |
| Acinetobacter radioresistens SK82 | 0.20 | MPMX26_00183 | | Phosphate-specific transport system accessory protein PhoU | 0.18 | MPMX26_02541 | | HTH-type transcriptional regulator CysL | 0.70 | 28 |
| Shewanella amazonensis SB2B | 0.20 | Sama_1411 | | transcriptional regulator PhoU (RefSeq) | 0.18 | Sama_1501 | | LysR family transcriptional regulator (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.19 | LU632_RS24900 | phoU | phosphate signaling complex protein PhoU | 0.20 | LU632_RS17295 | | LysR family transcriptional regulator | — | — |
| Shewanella loihica PV-4 | 0.19 | Shew_1701 | | transcriptional regulator PhoU (RefSeq) | 0.17 | Shew_2387 | | LysR family transcriptional regulator (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.19 | EX31_RS06050 | | phosphate signaling complex protein PhoU | 0.21 | EX31_RS19050 | | LysR family transcriptional regulator | — | — |
| Pectobacterium carotovorum WPP14 | 0.19 | HER17_RS21695 | | phosphate signaling complex protein PhoU | 0.19 | HER17_RS12840 | | LysR family transcriptional regulator | — | — |
| Dickeya dianthicola ME23 | 0.19 | DZA65_RS22560 | | phosphate signaling complex protein PhoU | 0.21 | DZA65_RS09590 | | LysR family transcriptional regulator | — | — |
| Dickeya dianthicola 67-19 | 0.19 | HGI48_RS21580 | | phosphate signaling complex protein PhoU | 0.20 | HGI48_RS09285 | | LysR family transcriptional regulator | — | — |
| Pseudomonas stutzeri RCH2 | 0.19 | Psest_0223 | | phosphate transport system regulatory protein PhoU | 0.19 | Psest_2863 | | Transcriptional regulator | — | — |
| Klebsiella michiganensis M5al | 0.18 | BWI76_RS00140 | | phosphate transport system regulator PhoU | 0.19 | BWI76_RS19690 | | LysR family transcriptional regulator | 0.23 | 77 |
| Pseudomonas sp. S08-1 | 0.18 | OH686_13430 | | phosphate transport system regulatory protein PhoU | 0.20 | OH686_18820 | | Transcriptional regulator, LysR family | low | > 80 |
| Enterobacter asburiae PDN3 | 0.18 | EX28DRAFT_4000 | | phosphate transport system regulatory protein PhoU | 0.19 | EX28DRAFT_0399 | | Transcriptional regulator | — | — |
| Enterobacter sp. TBS_079 | 0.18 | MPMX20_04643 | | Phosphate-specific transport system accessory protein PhoU | 0.20 | MPMX20_03128 | | HTH-type transcriptional activator CmpR | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.18 | Xcc-8004.3364.1 | | Phosphate transport system regulatory protein PhoU | 0.22 | Xcc-8004.979.1 | | LysR family transcriptional regulator YeiE | low | > 74 |
| Dickeya dadantii 3937 | 0.18 | DDA3937_RS21450 | | phosphate signaling complex protein PhoU | 0.20 | DDA3937_RS09260 | | LysR family transcriptional regulator | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.18 | GFF1738 | | Phosphate transport system regulatory protein PhoU | 0.20 | GFF3777 | | LysR family transcriptional regulator YeiE | — | — |
| Alteromonas macleodii MIT1002 | 0.18 | MIT1002_00877 | | Repressor protein PhoU | 0.15 | MIT1002_02002 | | putative hydrogen peroxide-inducible genes activator | low | > 70 |
| Herbaspirillum seropedicae SmR1 | 0.18 | HSERO_RS06330 | | transcriptional regulator | 0.16 | HSERO_RS13130 | | LysR family transcriptional regulator | low | > 78 |
| Serratia liquefaciens MT49 | 0.17 | IAI46_25195 | | phosphate signaling complex protein PhoU | 0.22 | IAI46_17215 | | LysR family transcriptional regulator | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.17 | A4249_RS08975 | | phosphate signaling complex protein PhoU | 0.20 | A4249_RS01115 | | LysR substrate-binding domain-containing protein | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU1085 | phoU | phosphate transport system protein PhoU (TIGR) | 0.22 | DVU1331 | | transcriptional regulator, LysR family (TIGR) | low | > 55 |
| Escherichia coli ECRC101 | 0.17 | OKFHMN_14900 | phoU | phosphate signaling complex protein PhoU | 0.20 | OKFHMN_23495 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.17 | OHPLBJKB_04329 | | Phosphate-specific transport system accessory protein PhoU | 0.20 | OHPLBJKB_01554 | | HTH-type transcriptional regulator CysL | — | — |
| Escherichia coli ECRC98 | 0.17 | JDDGAC_18520 | phoU | phosphate signaling complex protein PhoU | 0.20 | JDDGAC_27455 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli BL21 | 0.17 | ECD_03608 | | negative regulator of PhoR/PhoB two-component regulator | 0.20 | ECD_02086 | | putative DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECRC62 | 0.17 | BNILDI_04495 | pstA | phosphate ABC transporter permease PstA | 0.20 | BNILDI_13990 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli ECRC99 | 0.17 | KEDOAH_13250 | phoU | phosphate signaling complex protein PhoU | 0.20 | KEDOAH_04690 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli ECRC102 | 0.17 | NIAGMN_12655 | phoU | phosphate signaling complex protein PhoU | 0.20 | NIAGMN_21260 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia fergusonii Becca | 0.17 | EFB2_04909 | | Phosphate-specific transport system accessory protein PhoU | 0.18 | EFB2_01699 | | HTH-type transcriptional regulator CysL | — | — |
| Escherichia coli ECOR38 | 0.17 | HEPCGN_13610 | phoU | phosphate signaling complex protein PhoU | 0.20 | HEPCGN_22760 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli BW25113 | 0.17 | b3724 | phoU | negative regulator of PhoR/PhoB two-component regulator (NCBI) | 0.20 | b2157 | yeiE | predicted DNA-binding transcriptional regulator (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.17 | ECOLIN_RS21430 | | phosphate signaling complex protein PhoU | 0.20 | ECOLIN_RS12630 | | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli ECRC101 | 0.17 | MCAODC_05405 | phoU | phosphate signaling complex protein PhoU | 0.20 | MCAODC_14545 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Escherichia coli ECOR27 | 0.17 | NOLOHH_07030 | pstA | phosphate ABC transporter permease PstA | 0.18 | NOLOHH_15070 | yieE | DNA-binding transcriptional regulator YeiE | — | — |
| Rhodopseudomonas palustris CGA009 | 0.17 | TX73_024825 | | phosphate signaling complex protein PhoU | 0.20 | TX73_009100 | | LysR family transcriptional regulator | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.16 | DvMF_0880 | | phosphate uptake regulator, PhoU (RefSeq) | 0.19 | DvMF_0108 | | transcriptional regulator, LysR family (RefSeq) | low | > 51 |
| Sinorhizobium meliloti 1021 | 0.15 | SMc02141 | | phosphate transporter PhoU | 0.14 | SM_b21535 | | LysR family transcriptional regulator | low | > 103 |
| Synechococcus elongatus PCC 7942 | 0.14 | Synpcc7942_1912 | phoU | phosphate uptake regulator, PhoU | 0.20 | Synpcc7942_1310 | cmpR | ndhF3 operon transcriptional regulator | — | — |
| Methanococcus maripaludis JJ | 0.14 | MMJJ_RS08670 | | phosphate signaling complex protein PhoU | 0.17 | MMJJ_RS05540 | | LysR family transcriptional regulator | low | > 28 |
| Methanococcus maripaludis S2 | 0.14 | MMP_RS05680 | | phosphate signaling complex protein PhoU | 0.17 | MMP_RS08815 | | LysR family transcriptional regulator | — | — |
Not shown: 15 genomes with orthologs for BT1320 only; 13 genomes with orthologs for BT4599 only