Conservation of cofitness between BT2161 and BT4331 in Bacteroides thetaiotaomicron VPI-5482

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT2161 50S ribosomal protein L9 (NCBI ptt file) 1.0 BT4331 conserved hypothetical protein (NCBI ptt file) 0.48 2
Bacteroides ovatus ATCC 8483 0.97 BACOVA_03185 ribosomal protein L9 0.97 BACOVA_05134 hypothetical protein — —
Bacteroides stercoris CC31F 0.94 HMPREF1181_RS08725 50S ribosomal protein L9 0.87 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase low > 56
Phocaeicola vulgatus CL09T03C04 0.92 HMPREF1058_RS07635 50S ribosomal protein L9 0.84 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.91 ABI39_RS00060 50S ribosomal protein L9 0.86 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase — —
Parabacteroides merdae CL09T00C40 0.83 HMPREF1078_RS10755 50S ribosomal protein L9 0.76 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.62 ABZR88_RS05035 50S ribosomal protein L9 0.31 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.58 Echvi_2386 ribosomal protein L9 0.54 Echvi_3350 Predicted SAM-dependent methyltransferases — —
Pedobacter sp. GW460-11-11-14-LB5 0.57 CA265_RS02395 50S ribosomal protein L9 0.32 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.55 CA264_01265 50S ribosomal protein L9 0.57 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU0958 rplI ribosomal protein L9 (TIGR) 0.20 DVU0495 conserved hypothetical protein (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.36 DvMF_1352 rplI 50S ribosomal protein L9 (RefSeq) 0.22 DvMF_1714 protein of unknown function Met10 (RefSeq) — —
Dechlorosoma suillum PS 0.36 Dsui_1992 ribosomal protein L9 0.32 Dsui_0653 putative SAM-dependent methyltransferase low > 51
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_09590 rplI 50S ribosomal protein L9 0.20 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase low > 52
Marinobacter adhaerens HP15 0.33 HP15_628 50S ribosomal protein L9 0.17 HP15_460 SAM-dependent methyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.3313.1 LSU ribosomal protein L9p 0.25 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI low > 74
Rhodanobacter denitrificans MT42 0.32 LRK55_RS02290 50S ribosomal protein L9 0.21 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS02535 50S ribosomal protein L9 0.22 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase low > 59
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS08860 50S ribosomal protein L9 0.23 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase low > 74
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS22490 50S ribosomal protein L9 0.36 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase low > 153
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS15790 50S ribosomal protein L9 0.35 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase — —
Ralstonia solanacearum UW163 0.31 UW163_RS13235 50S ribosomal protein L9 0.35 UW163_RS03910 class I SAM-dependent rRNA methyltransferase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS09230 50S ribosomal protein L9 0.24 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase low > 62
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_139 LSU ribosomal protein L9p 0.20 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI low > 87
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_01940 50S ribosomal protein L9 0.32 CSW01_06820 ribosomal RNA large subunit methyltransferase I — —
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS11360 50S ribosomal protein L9 0.36 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS12590 50S ribosomal protein L9 0.32 RR42_RS01670 23S rRNA methyltransferase low > 128
Pseudomonas stutzeri RCH2 0.29 Psest_0697 ribosomal protein L9 0.20 Psest_0236 Predicted SAM-dependent methyltransferases low > 67
Escherichia coli Nissle 1917 0.29 ECOLIN_RS24390 50S ribosomal protein L9 0.32 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC102 0.29 NIAGMN_09950 rplI 50S ribosomal protein L9 0.32 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC99 0.29 KEDOAH_16055 rplI 50S ribosomal protein L9 0.32 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECOR38 0.29 HEPCGN_10330 rplI 50S ribosomal protein L9 0.32 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli BL21 0.29 ECD_04070 50S ribosomal subunit protein L9 0.32 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC101 0.29 OKFHMN_12100 rplI 50S ribosomal protein L9 0.32 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Shewanella oneidensis MR-1 0.29 SO3927 rplI ribosomal protein L9 (NCBI ptt file) 0.33 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_03839 50S ribosomal protein L9 0.32 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I — —
Escherichia coli ECRC98 0.29 JDDGAC_15740 rplI 50S ribosomal protein L9 0.32 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli BW25113 0.29 b4203 rplI 50S ribosomal protein L9 (NCBI) 0.32 b0967 yccW predicted methyltransferase (RefSeq) low > 76
Escherichia fergusonii Becca 0.29 EFB2_04332 50S ribosomal protein L9 0.32 EFB2_03104 Ribosomal RNA large subunit methyltransferase I low > 86
Escherichia coli ECRC101 0.29 MCAODC_02615 rplI 50S ribosomal protein L9 0.32 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECOR27 0.29 NOLOHH_04360 rplI 50S ribosomal protein L9 0.32 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC62 0.29 BNILDI_07125 rplI 50S ribosomal protein L9 0.32 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Serratia liquefaciens MT49 0.28 IAI46_01715 50S ribosomal protein L9 0.32 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Paraburkholderia graminis OAS925 0.28 ABIE53_002008 large subunit ribosomal protein L9 0.34 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase — —
Rahnella sp. WP5 0.28 EX31_RS08745 50S ribosomal protein L9 0.32 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 89
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_00792 LSU ribosomal protein L9P 0.34 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase — —
Pantoea sp. MT58 0.28 IAI47_02675 50S ribosomal protein L9 0.33 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_0584 LSU ribosomal protein L9P 0.19 Psyr_4764 SAM-dependent methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_0584 LSU ribosomal protein L9P 0.19 Psyr_4764 SAM-dependent methyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF857 LSU ribosomal protein L9p 0.32 GFF3258 LSU m5C1962 methyltransferase RlmI — —
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_08585 50S ribosomal protein L9 0.20 AO356_13260 SAM-dependent methyltransferase low > 104
Ralstonia solanacearum GMI1000 0.28 RS_RS06570 50S ribosomal protein L9 0.35 RS_RS00255 class I SAM-dependent rRNA methyltransferase — —
Burkholderia phytofirmans PsJN 0.27 BPHYT_RS08870 50S ribosomal protein L9 0.34 BPHYT_RS01650 23S rRNA methyltransferase — —
Pseudomonas sp. RS175 0.27 PFR28_05135 50S ribosomal protein L9 0.20 PFR28_04274 Ribosomal RNA large subunit methyltransferase I — —
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_1398 LSU ribosomal protein L9p 0.20 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI — —
Erwinia tracheiphila SCR3 0.27 LU632_RS21710 rplI 50S ribosomal protein L9 0.32 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 74
Pseudomonas putida KT2440 0.27 PP_4874 50S ribosomal protein L9 0.19 PP_5127 ribosomal RNA large subunit methyltransferase I low > 96
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_3602 LSU ribosomal protein L9p 0.20 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI — —
Ralstonia solanacearum PSI07 0.27 RPSI07_RS17575 50S ribosomal protein L9 0.35 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_13225 50S ribosomal protein L9 0.20 AO353_08330 SAM-dependent methyltransferase low > 101
Alteromonas macleodii MIT1002 0.27 MIT1002_03816 50S ribosomal protein L9 0.32 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I low > 70
Enterobacter sp. TBS_079 0.27 MPMX20_00480 50S ribosomal protein L9 0.33 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I low > 85
Variovorax sp. SCN45 0.26 GFF2813 LSU ribosomal protein L9p 0.28 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) low > 127
Variovorax sp. OAS795 0.26 ABID97_RS10840 50S ribosomal protein L9 0.27 ABID97_RS06155 class I SAM-dependent methyltransferase low > 91
Pseudomonas fluorescens SBW25 0.26 PFLU_RS02650 50S ribosomal protein L9 0.20 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Pseudomonas simiae WCS417 0.26 PS417_02580 50S ribosomal protein L9 0.20 PS417_26880 SAM-dependent methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS02650 50S ribosomal protein L9 0.20 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase — —
Shewanella sp. ANA-3 0.25 Shewana3_0704 rplI 50S ribosomal protein L9 (RefSeq) 0.33 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) — —
Enterobacter asburiae PDN3 0.25 EX28DRAFT_3388 ribosomal protein L9 0.33 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases — —
Acidovorax sp. GW101-3H11 0.25 Ac3H11_1514 LSU ribosomal protein L9p 0.25 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI low > 79
Shewanella amazonensis SB2B 0.24 Sama_3061 rplI 50S ribosomal protein L9 (RefSeq) 0.32 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) — —
Klebsiella michiganensis M5al 0.24 BWI76_RS02675 50S ribosomal protein L9 0.34 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase — —
Fusobacterium nucleatum SB010 0.21 HUW76_02105 50S ribosomal protein L9 0.23 HUW76_04950 class I SAM-dependent rRNA methyltransferase low > 35

Not shown: 14 genomes with orthologs for BT2161 only; 8 genomes with orthologs for BT4331 only