| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | 1.0 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.40 | 19 |
| Bacteroides ovatus ATCC 8483 | 0.94 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | 0.98 | BACOVA_03528 | | pseudouridine synthase, RluA family | low | > 94 |
| Bacteroides stercoris CC31F | 0.89 | HMPREF1181_RS01530 | | tRNA dihydrouridine synthase DusB | 0.91 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.86 | HMPREF1058_RS10945 | | tRNA dihydrouridine synthase DusB | 0.83 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.83 | 3 |
| Phocaeicola dorei CL03T12C01 | 0.85 | ABI39_RS06125 | | tRNA dihydrouridine synthase DusB | 0.83 | ABI39_RS02845 | | RluA family pseudouridine synthase | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.78 | HMPREF1078_RS05375 | | tRNA dihydrouridine synthase DusB | 0.69 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.56 | CA264_17860 | | tRNA dihydrouridine synthase DusB | 0.51 | CA264_15205 | | RNA pseudouridine synthase | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.54 | Echvi_1531 | | putative TIM-barrel protein, nifR3 family | 0.53 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.41 | 13 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.52 | ABZR88_RS22340 | | tRNA dihydrouridine synthase DusB | 0.55 | ABZR88_RS03985 | | RluA family pseudouridine synthase | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.52 | CA265_RS21125 | | tRNA dihydrouridine synthase DusB | 0.54 | CA265_RS14415 | | pseudouridine synthase | 0.46 | 2 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS11940 | | tRNA dihydrouridine synthase DusB | 0.30 | AMB_RS16095 | | RluA family pseudouridine synthase | low | > 64 |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | 0.27 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Shewanella amazonensis SB2B | 0.33 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | 0.27 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS07960 | | tRNA dihydrouridine synthase DusB | 0.25 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.81 | 26 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | 0.30 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS11695 | | tRNA dihydrouridine synthase DusB | 0.30 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS01890 | | tRNA dihydrouridine synthase DusB | 0.30 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas sp. S08-1 | 0.33 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | 0.27 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | 0.29 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Serratia liquefaciens MT49 | 0.33 | IAI46_22775 | | tRNA dihydrouridine synthase DusB | 0.26 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 86 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | 0.30 | RR42_RS07590 | | pseudouridine synthase | low | > 128 |
| Kangiella aquimarina DSM 16071 | 0.33 | B158DRAFT_0164 | | tRNA-U20-dihydrouridine synthase | 0.30 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | low | > 40 |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_02127 | | tRNA-dihydrouridine synthase B | 0.26 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Rahnella sp. WP5 | 0.33 | EX31_RS12180 | | tRNA dihydrouridine synthase DusB | 0.26 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.74 | 52 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_04169 | | tRNA-dihydrouridine synthase B | 0.26 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.37 | 71 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS01355 | | tRNA dihydrouridine synthase DusB | 0.26 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | 0.29 | RS_RS08205 | | RluA family pseudouridine synthase | 0.49 | 4 |
| Shewanella sp. ANA-3 | 0.32 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | 0.27 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS01295 | | tRNA dihydrouridine synthase DusB | 0.26 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 71 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS25565 | | tRNA dihydrouridine synthase DusB | 0.27 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | — | — |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS01375 | | tRNA dihydrouridine synthase DusB | 0.26 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS11525 | | tRNA dihydrouridine synthase DusB | 0.27 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Pseudomonas putida KT2440 | 0.32 | PP_4820 | | tRNA-dihydrouridine synthase B | 0.27 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_3313 | | putative TIM-barrel protein, nifR3 family | 0.27 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | low | > 76 |
| Azospirillum sp. SherDot2 | 0.32 | MPMX19_01110 | | tRNA-dihydrouridine synthase B | 0.31 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_3225 | | tRNA-dihydrouridine synthase B | 0.29 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Escherichia coli ECRC62 | 0.31 | BNILDI_02050 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli Nissle 1917 | 0.31 | ECOLIN_RS18725 | | tRNA dihydrouridine synthase DusB | 0.27 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Escherichia coli ECRC102 | 0.31 | NIAGMN_15445 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECOR38 | 0.31 | HEPCGN_16505 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 85 |
| Escherichia coli BW25113 | 0.31 | b3260 | dusB | tRNA-dihydrouridine synthase B (NCBI) | 0.27 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.31 | NOLOHH_09470 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 57 |
| Escherichia coli ECRC101 | 0.31 | OKFHMN_17685 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia fergusonii Becca | 0.31 | EFB2_00564 | | tRNA-dihydrouridine synthase B | 0.27 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Escherichia coli BL21 | 0.31 | ECD_03118 | | tRNA-dihydrouridine synthase B | 0.27 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | low | > 60 |
| Escherichia coli ECRC101 | 0.31 | MCAODC_08205 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pectobacterium carotovorum WPP14 | 0.31 | HER17_RS20235 | | tRNA dihydrouridine synthase DusB | 0.26 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS16450 | | tRNA dihydrouridine synthase DusB | 0.28 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 62 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS24735 | | tRNA dihydrouridine synthase DusB | 0.22 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS11875 | | tRNA dihydrouridine synthase DusB | 0.28 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS12140 | | tRNA dihydrouridine synthase DusB | 0.28 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_11770 | dusB | tRNA dihydrouridine synthase DusB | 0.29 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF634 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.24 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 90 |
| Pantoea sp. MT58 | 0.31 | IAI47_02385 | | tRNA dihydrouridine synthase DusB | 0.26 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 76 |
| Shewanella loihica PV-4 | 0.30 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | 0.27 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS14420 | | tRNA-dihydrouridine synthase | 0.14 | AZOBR_RS06905 | | pseudouridine synthase | low | > 97 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.27 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_3996 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.27 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_13660 | | tRNA-dihydrouridine synthase B | 0.27 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_08215 | | tRNA-dihydrouridine synthase B | 0.28 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_05216 | | tRNA-dihydrouridine synthase B | 0.27 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.29 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.28 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.28 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | 0.27 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_02950 | | tRNA-dihydrouridine synthase B | 0.27 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.27 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Escherichia coli ECRC98 | 0.29 | JDDGAC_21310 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.27 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Escherichia coli ECRC99 | 0.29 | KEDOAH_10465 | dusB | tRNA dihydrouridine synthase DusB | 0.27 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | 0.28 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_013410 | | tRNA dihydrouridine synthase DusB | 0.26 | TX73_001905 | | RluA family pseudouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | 0.28 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.43 | 51 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00445 | | putative tRNA-dihydrouridine synthase | 0.27 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_0140 | | tRNA-U20-dihydrouridine synthase | 0.28 | Ga0059261_0664 | | pseudouridine synthase, RluA family | low | > 68 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A1676 | | Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) | 0.29 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01813 | | tRNA-dihydrouridine synthase | 0.25 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01813 | | tRNA-dihydrouridine synthase | 0.25 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_04330 | | tRNA-dihydrouridine synthase | 0.29 | HUW76_08575 | | RluA family pseudouridine synthase | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.23 | Rv0823c | | Possible transcriptional regulatory protein | 0.17 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | — | — |
| Synechococcus elongatus PCC 7942 | 0.23 | Synpcc7942_0283 | | Dihydrouridine synthase TIM-barrel protein nifR3 | 0.26 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | low | > 38 |
| Bosea sp. OAE506 | 0.12 | ABIE41_RS21285 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.28 | ABIE41_RS05635 | | RluA family pseudouridine synthase | low | > 77 |
Not shown: 8 genomes with orthologs for BT3073 only; 13 genomes with orthologs for BT3712 only