Conservation of cofitness between BT4409 and BT3266 in Bacteroides thetaiotaomicron VPI-5482

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT4409 DNA damage-inducible protein (NCBI ptt file) 1.0 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.48 2
Bacteroides ovatus ATCC 8483 0.96 BACOVA_05231 putative DNA polymerase IV 0.95 BACOVA_01365 excinuclease ABC, C subunit low > 94
Bacteroides stercoris CC31F 0.84 HMPREF1181_RS13945 DNA polymerase IV 0.86 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Parabacteroides merdae CL09T00C40 0.82 HMPREF1078_RS15010 DNA polymerase IV 0.73 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61
Phocaeicola dorei CL03T12C01 0.81 ABI39_RS09595 DNA polymerase IV 0.82 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Phocaeicola vulgatus CL09T03C04 0.81 HMPREF1058_RS13990 DNA polymerase IV 0.82 HMPREF1058_RS11525 excinuclease ABC subunit UvrC low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_08955 DNA polymerase IV 0.43 CA264_16350 excinuclease ABC subunit C low > 74
Sinorhizobium meliloti 1021 0.48 SMa2355 DNA polymerase IV 0.23 SMc00602 excinuclease ABC subunit C low > 103
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS20685 DNA polymerase IV 0.47 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS24610 DNA polymerase IV 0.46 CA265_RS18110 excinuclease ABC subunit C low > 88
Agrobacterium fabrum C58 0.45 Atu5469 DNA polymerase IV 0.23 Atu1129 excinuclease ABC chain C low > 89
Rhizobium sp. OAE497 0.44 ABIE40_RS27830 DNA polymerase IV 0.23 ABIE40_RS06500 excinuclease ABC subunit UvrC — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS05230 DNA polymerase IV 0.23 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4535.1 DNA polymerase IV (EC 2.7.7.7) 0.24 Xcc-8004.2477.1 Excinuclease ABC subunit C low > 74
Pseudomonas sp. S08-1 0.37 OH686_18925 DNA polymerase IV 0.24 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_1397 DNA-directed DNA polymerase 0.26 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_1397 DNA-directed DNA polymerase 0.26 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas sp. RS175 0.37 PFR28_00492 DNA polymerase IV 0.24 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_2974 DNA polymerase IV (EC 2.7.7.7) 0.24 Pf6N2E2_2021 Excinuclease ABC subunit C 0.21 24
Lysobacter sp. OAE881 0.37 ABIE51_RS08465 DNA polymerase IV 0.25 ABIE51_RS12455 excinuclease ABC subunit UvrC low > 62
Pseudomonas fluorescens SBW25 0.36 PFLU_RS24490 DNA polymerase IV 0.25 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS24490 DNA polymerase IV 0.25 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas simiae WCS417 0.36 PS417_22830 DNA polymerase IV 0.25 PS417_10725 excinuclease ABC subunit C 0.26 7
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_05570 DNA polymerase IV 0.25 AO356_00350 excinuclease ABC subunit C 0.37 2
Pectobacterium carotovorum WPP14 0.36 HER17_RS04670 DNA polymerase IV 0.25 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_16910 DNA polymerase IV 0.25 AO353_21835 excinuclease ABC subunit C low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_3165 DNA polymerase IV (EC 2.7.7.7) 0.25 Pf1N1B4_5618 Excinuclease ABC subunit C low > 87
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1563 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.28 B158DRAFT_1273 Excinuclease ABC subunit C low > 40
Pseudomonas putida KT2440 0.36 PP_1203 DNA polymerase IV 0.26 PP_4098 UvrABC system protein C low > 96
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS11335 DNA polymerase IV 0.25 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Dickeya dianthicola 67-19 0.36 HGI48_RS16645 DNA polymerase IV 0.24 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS17735 DNA polymerase IV 0.24 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Alteromonas macleodii MIT1002 0.35 MIT1002_03478 DNA polymerase IV 0.26 MIT1002_02153 Excinuclease ABC subunit C low > 70
Rhodanobacter denitrificans MT42 0.35 LRK55_RS11065 DNA polymerase IV 0.24 LRK55_RS00120 excinuclease ABC subunit UvrC low > 63
Dickeya dadantii 3937 0.35 DDA3937_RS16575 DNA polymerase IV 0.25 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Shewanella loihica PV-4 0.35 Shew_2871 DNA polymerase IV (RefSeq) 0.25 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.89 1
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_12560 dinB DNA polymerase IV 0.24 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_11635 DNA polymerase IV 0.26 CSW01_06140 excinuclease ABC subunit C low > 62
Shewanella amazonensis SB2B 0.35 Sama_2527 DNA polymerase IV (RefSeq) 0.25 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.39 12
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4104 DNA polymerase IV (EC 2.7.7.7) 0.25 GFF1700 Excinuclease ABC subunit C low > 78
Pseudomonas stutzeri RCH2 0.34 Psest_1304 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.26 Psest_2259 excinuclease ABC, C subunit low > 67
Shewanella sp. ANA-3 0.34 Shewana3_0949 DNA polymerase IV (RefSeq) 0.26 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Marinobacter adhaerens HP15 0.34 HP15_737 DNA polymerase IV 0.25 HP15_1568 excinuclease ABC subunit C low > 73
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS13550 DNA polymerase IV 0.25 ABZR87_RS10245 excinuclease ABC subunit UvrC low > 80
Shewanella oneidensis MR-1 0.34 SO1114 dinP DNA-damage-inducible protein P (NCBI ptt file) 0.26 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) low > 76
Escherichia fergusonii Becca 0.33 EFB2_03787 DNA polymerase IV 0.25 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECOR27 0.33 NOLOHH_02095 dinB DNA polymerase IV 0.25 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli BL21 0.33 ECD_00226 DNA polymerase IV 0.25 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 60
Escherichia coli BW25113 0.33 b0231 dinB DNA polymerase IV (NCBI) 0.25 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.17 64
Escherichia coli ECRC62 0.33 BNILDI_00290 dinB DNA polymerase IV 0.25 BNILDI_15235 uvrC excinuclease ABC subunit UvrC — —
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS12255 DNA polymerase IV 0.23 ABZR86_RS02245 excinuclease ABC subunit UvrC low > 74
Acinetobacter radioresistens SK82 0.33 MPMX26_00130 DNA polymerase IV 0.25 MPMX26_00228 UvrABC system protein C low > 36
Escherichia coli Nissle 1917 0.33 ECOLIN_RS01780 DNA polymerase IV 0.25 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 52
Escherichia coli ECRC102 0.33 NIAGMN_07590 dinB DNA polymerase IV 0.25 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC99 0.33 KEDOAH_18425 dinB DNA polymerase IV 0.25 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC101 0.33 OKFHMN_09730 dinB DNA polymerase IV 0.25 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC98 0.33 JDDGAC_13355 dinB DNA polymerase IV 0.25 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_03407 DNA polymerase IV 0.25 OHPLBJKB_01816 UvrABC system protein C low > 73
Enterobacter sp. TBS_079 0.33 MPMX20_00921 DNA polymerase IV 0.25 MPMX20_02838 UvrABC system protein C low > 85
Escherichia coli ECRC101 0.33 MCAODC_00250 dinB DNA polymerase IV 0.25 MCAODC_19565 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECOR38 0.33 HEPCGN_07825 dinB DNA polymerase IV 0.25 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 85
Serratia liquefaciens MT49 0.33 IAI46_04405 DNA polymerase IV 0.25 IAI46_09210 excinuclease ABC subunit UvrC low > 86
Klebsiella michiganensis M5al 0.33 BWI76_RS05530 DNA polymerase IV 0.26 BWI76_RS18330 excinuclease ABC subunit C low > 92
Pantoea sp. MT58 0.33 IAI47_15175 DNA polymerase IV 0.26 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Enterobacter asburiae PDN3 0.32 EX28DRAFT_2657 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.25 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Rahnella sp. WP5 0.32 EX31_RS21005 DNA polymerase IV 0.25 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Azospirillum brasilense Sp245 0.30 AZOBR_RS21200 DNA polymerase IV 0.25 AZOBR_RS08965 excinuclease ABC subunit C low > 97
Erwinia tracheiphila SCR3 0.30 LU632_RS01150 dinB DNA polymerase IV 0.25 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Magnetospirillum magneticum AMB-1 0.30 AMB_RS03210 DNA polymerase IV 0.24 AMB_RS19240 UvrABC system protein C low > 64
Phaeobacter inhibens DSM 17395 0.29 PGA1_c32470 DNA polymerase IV 0.25 PGA1_c02880 uvrABC system protein C low > 62
Rhodospirillum rubrum S1H 0.29 Rru_A3530 DNA-directed DNA polymerase (NCBI) 0.26 Rru_A2220 Excinuclease ABC, C subunit (NCBI) low > 58
Azospirillum sp. SherDot2 0.28 MPMX19_05504 DNA polymerase IV 0.24 MPMX19_01070 UvrABC system protein C low > 112
Dinoroseobacter shibae DFL-12 0.26 Dshi_0385 DNA-directed DNA polymerase (RefSeq) 0.25 Dshi_0644 excinuclease ABC, C subunit (RefSeq) low > 64
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS21635 DNA-directed DNA polymerase 0.25 HSERO_RS09690 excinuclease ABC subunit C low > 78
Castellaniella sp019104865 MT123 0.24 ABCV34_RS12020 DNA polymerase IV 0.23 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Variovorax sp. SCN45 0.23 GFF5999 DNA polymerase IV (EC 2.7.7.7) 0.24 GFF2859 Excinuclease ABC subunit C low > 127
Variovorax sp. OAS795 0.23 ABID97_RS07995 DNA polymerase IV 0.25 ABID97_RS10635 excinuclease ABC subunit UvrC low > 91
Dechlorosoma suillum PS 0.22 Dsui_2075 nucleotidyltransferase/DNA polymerase involved in DNA repair 0.25 Dsui_2470 excinuclease ABC, C subunit — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF728 DNA polymerase IV (EC 2.7.7.7) 0.24 GFF3847 Excinuclease ABC subunit C — —
Fusobacterium nucleatum SB010 0.21 HUW76_04255 DNA polymerase IV 0.26 HUW76_06695 excinuclease ABC subunit UvrC low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_2408 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.43 Echvi_0619 excinuclease ABC, C subunit 0.90 3
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_3438 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.23 Ga0059261_3186 Excinuclease ABC subunit C low > 68

Not shown: 12 genomes with orthologs for BT4409 only; 8 genomes with orthologs for BT3266 only