| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 1.0 | BT1733 | | putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) | 0.87 | 6 |
| Bacteroides ovatus ATCC 8483 | 0.97 | BACOVA_00215 | | diaminopimelate decarboxylase | 0.97 | BACOVA_04462 | | putative phosphoribosylformylglycinamidine synthase | 0.90 | 53 |
| Bacteroides stercoris CC31F | 0.88 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | 0.94 | HMPREF1181_RS05605 | | phosphoribosylformylglycinamidine synthase | 0.87 | 46 |
| Phocaeicola vulgatus CL09T03C04 | 0.85 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | 0.88 | HMPREF1058_RS07955 | | phosphoribosylformylglycinamidine synthase | 0.86 | 5 |
| Phocaeicola dorei CL03T12C01 | 0.84 | ABI39_RS19950 | | diaminopimelate decarboxylase | 0.88 | ABI39_RS00405 | | phosphoribosylformylglycinamidine synthase | 0.59 | 48 |
| Parabacteroides merdae CL09T00C40 | 0.67 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | 0.74 | HMPREF1078_RS04325 | | phosphoribosylformylglycinamidine synthase | 0.93 | 45 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.54 | CA265_RS09650 | | diaminopimelate decarboxylase | 0.60 | CA265_RS05195 | | phosphoribosylformylglycinamidine synthase | — | — |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_00160 | | Diaminopimelate decarboxylase | 0.26 | MIT1002_01027 | | Phosphoribosylformylglycinamidine synthase | low | > 70 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS17930 | | diaminopimelate decarboxylase | 0.26 | BPHYT_RS09515 | | phosphoribosylformylglycinamidine synthase | 0.32 | 98 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_05606 | | diaminopimelate decarboxylase | 0.26 | H281DRAFT_00909 | | phosphoribosylformylglycinamidine synthase | — | — |
| Shewanella loihica PV-4 | 0.35 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.26 | Shew_1301 | | phosphoribosylformylglycinamidine synthase (RefSeq) | low | > 60 |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS28080 | | diaminopimelate decarboxylase | 0.26 | QEN71_RS21920 | | phosphoribosylformylglycinamidine synthase | 0.79 | 50 |
| Shewanella oneidensis MR-1 | 0.35 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.26 | SO3287 | purL | phosphoribosylformylglycinamidine synthase (NCBI ptt file) | 0.86 | 76 |
| Rhodanobacter sp. FW510-T8 | 0.35 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | 0.26 | OKGIIK_11505 | purL | phosphoribosylformylglycinamidine synthase | low | > 52 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003749 | | diaminopimelate decarboxylase | 0.26 | ABIE53_002141 | | phosphoribosylformylglycinamidine synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.25 | ABZR87_RS12730 | | phosphoribosylformylglycinamidine synthase | — | — |
| Shewanella sp. ANA-3 | 0.35 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.26 | Shewana3_1240 | | phosphoribosylformylglycinamidine synthase (RefSeq) | 0.91 | 50 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS00950 | | diaminopimelate decarboxylase | 0.26 | HSERO_RS11190 | | phosphoribosylformylglycinamidine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | 0.25 | RALBFv3_RS01285 | | phosphoribosylformylglycinamidine synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS10250 | | diaminopimelate decarboxylase | 0.25 | RPSI07_RS16190 | | phosphoribosylformylglycinamidine synthase | — | — |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS06625 | | diaminopimelate decarboxylase | 0.25 | UW163_RS14595 | | phosphoribosylformylglycinamidine synthase | — | — |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS13675 | | diaminopimelate decarboxylase | 0.26 | ABIE51_RS04505 | | phosphoribosylformylglycinamidine synthase | low | > 62 |
| Shewanella amazonensis SB2B | 0.34 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.27 | Sama_2350 | | phosphoribosylformylglycinamidine synthase (RefSeq) | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS12130 | | diaminopimelate decarboxylase | 0.25 | ABZR86_RS19235 | | phosphoribosylformylglycinamidine synthase | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS14930 | | diaminopimelate decarboxylase | 0.25 | RS_RS08710 | | phosphoribosylformylglycinamidine synthase | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_1182 | | diaminopimelate decarboxylase | 0.26 | Dsui_2892 | | phosphoribosylformylglycinamidine synthase, single chain form | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS11485 | | diaminopimelate decarboxylase | 0.26 | LRK54_RS04720 | | phosphoribosylformylglycinamidine synthase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS11215 | | diaminopimelate decarboxylase | 0.26 | LRK55_RS04500 | | phosphoribosylformylglycinamidine synthase | low | > 63 |
| Vibrio cholerae E7946 ATCC 55056 | 0.33 | CSW01_00635 | | diaminopimelate decarboxylase | 0.26 | CSW01_04470 | | phosphoribosylformylglycinamidine synthase | low | > 62 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_247 | | diaminopimelate decarboxylase | 0.25 | HP15_1239 | | phosphoribosylformylglycinamidine synthase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS19050 | | diaminopimelate decarboxylase | 0.26 | RR42_RS09140 | | phosphoribosylformylglycinamidine synthase | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.26 | GFF1324 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_0182 | | diaminopimelate decarboxylase | 0.26 | Psyr_1269 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas putida KT2440 | 0.32 | PP_5227 | | diaminopimelate decarboxylase | 0.27 | PP_1037 | | Phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_0182 | | diaminopimelate decarboxylase | 0.26 | Psyr_1269 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_12740 | | diaminopimelate decarboxylase | 0.27 | AO356_17520 | | phosphoribosylformylglycinamidine synthase | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS23305 | | diaminopimelate decarboxylase | 0.26 | ABID97_RS15675 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.27 | Pf6N2E2_5432 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | — | — |
| Pseudomonas sp. RS175 | 0.32 | PFR28_04375 | | Diaminopimelate decarboxylase | 0.26 | PFR28_03518 | | Phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_3764 | | diaminopimelate decarboxylase | 0.27 | Psest_3159 | | phosphoribosylformylglycinamidine synthase, single chain form | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.25 | GFF4566 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.27 | Pf1N1B4_887 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.26 | PfGW456L13_4835 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.27 | PFLU_RS24685 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.27 | PFLU_RS24685 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_09035 | | diaminopimelate decarboxylase | 0.26 | AO353_04485 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas sp. S08-1 | 0.31 | OH686_13800 | | diaminopimelate decarboxylase | 0.26 | OH686_17630 | | phosphoribosylformylglycinamidine synthase | — | — |
| Pseudomonas simiae WCS417 | 0.31 | PS417_27580 | | diaminopimelate decarboxylase | 0.26 | PS417_23020 | | phosphoribosylformylglycinamidine synthase | — | — |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS12685 | | diaminopimelate decarboxylase | 0.25 | ABCV34_RS04940 | | phosphoribosylformylglycinamidine synthase | — | — |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_02232 | | Diaminopimelate decarboxylase | 0.26 | MPMX26_02183 | | Phosphoribosylformylglycinamidine synthase | 0.83 | 20 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.22 | Echvi_1295 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.63 | Echvi_4428 | | Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain | — | — |
| Kangiella aquimarina DSM 16071 | 0.21 | B158DRAFT_0272 | | pyridoxal-dependent decarboxylase, exosortase A system-associated | 0.25 | B158DRAFT_2244 | | phosphoribosylformylglycinamidine synthase, single chain form | — | — |
| Enterobacter sp. TBS_079 | 0.19 | MPMX20_03705 | | Diaminopimelate decarboxylase | 0.26 | MPMX20_03426 | | Phosphoribosylformylglycinamidine synthase | 0.70 | 58 |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_2916 | | diaminopimelate decarboxylase | 0.26 | EX28DRAFT_0092 | | phosphoribosylformylglycinamidine synthase, single chain form | low | > 76 |
| Escherichia coli Nissle 1917 | 0.19 | ECOLIN_RS15930 | | diaminopimelate decarboxylase | 0.26 | ECOLIN_RS14470 | | phosphoribosylformylglycinamidine synthase | low | > 52 |
| Escherichia fergusonii Becca | 0.19 | EFB2_01045 | | Diaminopimelate decarboxylase | 0.26 | EFB2_01339 | | Phosphoribosylformylglycinamidine synthase | low | > 86 |
| Escherichia coli ECRC99 | 0.19 | KEDOAH_08185 | lysA | diaminopimelate decarboxylase | 0.26 | KEDOAH_06750 | purL | phosphoribosylformylglycinamidine synthase | — | — |
| Escherichia coli ECRC98 | 0.19 | JDDGAC_23610 | lysA | diaminopimelate decarboxylase | 0.26 | JDDGAC_25135 | purL | phosphoribosylformylglycinamidine synthase | — | — |
| Erwinia tracheiphila SCR3 | 0.19 | LU632_RS06040 | lysA | diaminopimelate decarboxylase | 0.26 | LU632_RS17975 | purL | phosphoribosylformylglycinamidine synthase | low | > 74 |
| Escherichia coli ECRC62 | 0.19 | BNILDI_10310 | lysA | diaminopimelate decarboxylase | 0.26 | BNILDI_11945 | purL | phosphoribosylformylglycinamidine synthase | — | — |
| Escherichia coli ECOR38 | 0.19 | HEPCGN_19565 | lysA | diaminopimelate decarboxylase | 0.26 | HEPCGN_20615 | purL | phosphoribosylformylglycinamidine synthase | low | > 85 |
| Escherichia coli BL21 | 0.19 | ECD_02686 | | diaminopimelate decarboxylase, PLP-binding | 0.26 | ECD_02449 | | phosphoribosylformyl-glycineamide synthetase | low | > 60 |
| Escherichia coli BW25113 | 0.19 | b2838 | lysA | diaminopimelate decarboxylase, PLP-binding (NCBI) | 0.26 | b2557 | purL | phosphoribosylformylglycinamidine synthase (NCBI) | 0.80 | 59 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.19 | OHPLBJKB_00891 | | Diaminopimelate decarboxylase | 0.26 | OHPLBJKB_01150 | | Phosphoribosylformylglycinamidine synthase | low | > 73 |
| Escherichia coli ECOR27 | 0.19 | NOLOHH_11830 | lysA | diaminopimelate decarboxylase | 0.26 | NOLOHH_13145 | purL | phosphoribosylformylglycinamidine synthase | low | > 57 |
| Dickeya dianthicola ME23 | 0.19 | DZA65_RS00505 | | type III PLP-dependent enzyme | 0.26 | DZA65_RS16830 | | phosphoribosylformylglycinamidine synthase | low | > 75 |
| Escherichia coli ECRC102 | 0.19 | NIAGMN_17715 | lysA | diaminopimelate decarboxylase | 0.26 | NIAGMN_19240 | purL | phosphoribosylformylglycinamidine synthase | — | — |
| Escherichia coli ECRC101 | 0.19 | MCAODC_10470 | lysA | diaminopimelate decarboxylase | 0.26 | MCAODC_12000 | purL | phosphoribosylformylglycinamidine synthase | — | — |
| Escherichia coli ECRC101 | 0.19 | OKFHMN_19945 | lysA | diaminopimelate decarboxylase | 0.26 | OKFHMN_21470 | purL | phosphoribosylformylglycinamidine synthase | — | — |
| Dickeya dianthicola 67-19 | 0.19 | HGI48_RS00505 | | type III PLP-dependent enzyme | 0.26 | HGI48_RS15750 | | phosphoribosylformylglycinamidine synthase | low | > 71 |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS20740 | | type III PLP-dependent enzyme | 0.26 | DDA3937_RS15655 | | phosphoribosylformylglycinamidine synthase | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.18 | Ac3H11_3862 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.25 | Ac3H11_539 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | — | — |
| Rahnella sp. WP5 | 0.18 | EX31_RS02420 | | type III PLP-dependent enzyme | 0.26 | EX31_RS21895 | | phosphoribosylformylglycinamidine synthase | low | > 89 |
| Klebsiella michiganensis M5al | 0.18 | BWI76_RS23360 | | diaminopimelate decarboxylase | 0.26 | BWI76_RS21265 | | phosphoribosylformylglycinamidine synthase | 0.76 | 43 |
| Serratia liquefaciens MT49 | 0.18 | IAI46_20520 | | diaminopimelate decarboxylase | 0.26 | IAI46_19475 | | phosphoribosylformylglycinamidine synthase | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.18 | HER17_RS03710 | | diaminopimelate decarboxylase | 0.26 | HER17_RS05910 | | phosphoribosylformylglycinamidine synthase | 0.90 | 51 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.18 | GFF1323 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.25 | GFF2459 | | Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) | low | > 78 |
| Pantoea sp. MT58 | 0.17 | IAI47_03860 | | diaminopimelate decarboxylase | 0.26 | IAI47_04930 | | phosphoribosylformylglycinamidine synthase | 0.83 | 61 |
Not shown: 22 genomes with orthologs for BT1374 only; 2 genomes with orthologs for BT1733 only