Conservation of cofitness between b4015 and b0724 in Escherichia coli BW25113

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4015 aceA isocitrate lyase (NCBI) 1.0 b0724 sdhB succinate dehydrogenase, FeS subunit (NCBI) 0.23 8
Escherichia coli Nissle 1917 1.00 ECOLIN_RS26870 isocitrate lyase 1.00 ECOLIN_RS03860 succinate dehydrogenase iron-sulfur subunit SdhB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04035 Isocitrate lyase 1.00 OHPLBJKB_02992 Succinate dehydrogenase iron-sulfur subunit low > 73
Escherichia coli BL21 1.00 ECD_03887 isocitrate lyase 0.99 ECD_00684 succinate dehydrogenase, FeS subunit low > 60
Escherichia coli ECOR38 1.00 HEPCGN_11905 aceA isocitrate lyase 1.00 HEPCGN_01300 sdhB succinate dehydrogenase iron-sulfur subunit SdhB low > 85
Escherichia coli ECOR27 1.00 NOLOHH_05410 aceA isocitrate lyase 1.00 NOLOHH_23320 sdhB succinate dehydrogenase iron-sulfur subunit SdhB low > 57
Escherichia coli ECRC62 1.00 BNILDI_06110 aceA isocitrate lyase 1.00 BNILDI_21315 sdhB succinate dehydrogenase iron-sulfur subunit SdhB — —
Escherichia fergusonii Becca 1.00 EFB2_04595 Isocitrate lyase 1.00 EFB2_03381 Succinate dehydrogenase iron-sulfur subunit low > 86
Escherichia coli ECRC101 1.00 MCAODC_03765 aceA isocitrate lyase 1.00 MCAODC_26155 sdhB succinate dehydrogenase iron-sulfur subunit SdhB — —
Escherichia coli ECRC101 1.00 OKFHMN_13265 aceA isocitrate lyase 1.00 OKFHMN_06935 sdhB succinate dehydrogenase iron-sulfur subunit SdhB — —
Escherichia coli ECRC99 1.00 KEDOAH_14895 aceA isocitrate lyase 1.00 KEDOAH_21030 sdhB succinate dehydrogenase iron-sulfur subunit SdhB — —
Escherichia coli ECRC98 1.00 JDDGAC_16890 aceA isocitrate lyase 1.00 JDDGAC_10590 sdhB succinate dehydrogenase iron-sulfur subunit SdhB — —
Escherichia coli ECRC102 1.00 NIAGMN_11015 aceA isocitrate lyase 1.00 NIAGMN_04985 sdhB succinate dehydrogenase iron-sulfur subunit SdhB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF1352 Isocitrate lyase (EC 4.1.3.1) 0.98 GFF4638 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) 0.98 BWI76_RS08410 succinate dehydrogenase iron-sulfur subunit — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4329 isocitrate lyase 0.97 EX28DRAFT_2267 succinate dehydrogenase and fumarate reductase iron-sulfur protein low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_00232 Isocitrate lyase 0.96 MPMX20_01353 Succinate dehydrogenase iron-sulfur subunit low > 85
Pectobacterium carotovorum WPP14 0.89 HER17_RS02295 isocitrate lyase 0.86 HER17_RS14935 succinate dehydrogenase iron-sulfur subunit low > 75
Dickeya dianthicola 67-19 0.89 HGI48_RS19145 isocitrate lyase 0.91 HGI48_RS06495 succinate dehydrogenase iron-sulfur subunit low > 71
Dickeya dadantii 3937 0.88 DDA3937_RS19055 isocitrate lyase 0.92 DDA3937_RS06455 succinate dehydrogenase iron-sulfur subunit low > 74
Dickeya dianthicola ME23 0.88 DZA65_RS20265 isocitrate lyase 0.91 DZA65_RS06840 succinate dehydrogenase iron-sulfur subunit low > 75
Serratia liquefaciens MT49 0.87 IAI46_23190 isocitrate lyase 0.91 IAI46_06270 succinate dehydrogenase iron-sulfur subunit low > 86
Rahnella sp. WP5 0.87 EX31_RS11745 isocitrate lyase 0.90 EX31_RS23435 succinate dehydrogenase iron-sulfur subunit low > 89
Pantoea sp. MT58 0.84 IAI47_18005 isocitrate lyase 0.90 IAI47_13750 succinate dehydrogenase iron-sulfur subunit 0.28 66
Shewanella loihica PV-4 0.83 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) 0.77 Shew_1654 sdhB succinate dehydrogenase iron-sulfur subunit (RefSeq) — —
Shewanella amazonensis SB2B 0.83 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) 0.79 Sama_1426 sdhB succinate dehydrogenase iron-sulfur subunit (RefSeq) — —
Shewanella oneidensis MR-1 0.82 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) 0.80 SO1929 sdhB succinate dehydrogenase, iron-sulfur protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.82 Shewana3_2942 isocitrate lyase (RefSeq) 0.80 Shewana3_1709 sdhB succinate dehydrogenase iron-sulfur subunit (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_03830 isocitrate lyase 0.80 CSW01_10435 succinate dehydrogenase iron-sulfur subunit — —
Dechlorosoma suillum PS 0.75 Dsui_0011 isocitrate lyase 0.69 Dsui_2214 succinate dehydrogenase and fumarate reductase iron-sulfur protein — —
Variovorax sp. OAS795 0.75 ABID97_RS11115 isocitrate lyase 0.65 ABID97_RS08490 succinate dehydrogenase iron-sulfur subunit — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS18610 isocitrate lyase 0.70 PFLU_RS08950 succinate dehydrogenase iron-sulfur subunit — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS18610 isocitrate lyase 0.70 PFLU_RS08950 succinate dehydrogenase iron-sulfur subunit — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_27735 isocitrate lyase 0.70 AO353_01840 succinate dehydrogenase — —
Pseudomonas simiae WCS417 0.74 PS417_16570 isocitrate lyase 0.70 PS417_08890 succinate dehydrogenase — —
Variovorax sp. SCN45 0.74 GFF4829 Isocitrate lyase (EC 4.1.3.1) 0.66 GFF3896 Succinate dehydrogenase iron-sulfur protein (EC 1.3.5.1) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.74 GFF4147 Isocitrate lyase (EC 4.1.3.1) 0.65 GFF3367 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) 0.70 PfGW456L13_4270 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) 0.69 Pf1N1B4_3680 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_3196 isocitrate lyase 0.69 Psyr_2008 succinate dehydrogenase subunit B — —
Pseudomonas sp. RS175 0.74 PFR28_02625 Isocitrate lyase 0.70 PFR28_03097 Succinate dehydrogenase iron-sulfur subunit — —
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_3196 isocitrate lyase 0.69 Psyr_2008 succinate dehydrogenase subunit B — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_22080 isocitrate lyase 0.70 AO356_19690 succinate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) 0.70 Pf6N2E2_5854 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) — —
Acidovorax sp. GW101-3H11 0.73 Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) (from data) 0.67 Ac3H11_3159 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) — —
Pseudomonas putida KT2440 0.73 PP_4116 isocitrate lyase 0.70 PP_4190 succinate dehydrogenase iron-sulfur subunit — —
Castellaniella sp019104865 MT123 0.71 ABCV34_RS06915 isocitrate lyase 0.63 ABCV34_RS01700 succinate dehydrogenase iron-sulfur subunit — —
Paraburkholderia graminis OAS925 0.69 ABIE53_002536 isocitrate lyase 0.66 ABIE53_004879 succinate dehydrogenase / fumarate reductase iron-sulfur subunit — —
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_00580 isocitrate lyase 0.66 H281DRAFT_06119 succinate dehydrogenase subunit B — —
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS06270 isocitrate lyase 0.67 QEN71_RS38665 succinate dehydrogenase iron-sulfur subunit — —
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS10565 isocitrate lyase 0.66 HSERO_RS14900 succinate dehydrogenase iron-sulfur subunit — —
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS12200 isocitrate lyase 0.67 RR42_RS14440 succinate dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.311.1 Isocitrate lyase (EC 4.1.3.1) 0.55 Xcc-8004.2461.1 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) — —
Rhodanobacter denitrificans MT42 0.68 LRK55_RS10225 isocitrate lyase 0.54 LRK55_RS15930 succinate dehydrogenase iron-sulfur subunit — —
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS10585 isocitrate lyase 0.54 LRK54_RS16180 succinate dehydrogenase iron-sulfur subunit — —
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS12285 isocitrate lyase 0.64 BPHYT_RS33930 succinate dehydrogenase iron-sulfur subunit — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_13320 aceA isocitrate lyase 0.53 OKGIIK_08475 sdhB,frdB succinate dehydrogenase iron-sulfur subunit — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS13490 isocitrate lyase 0.53 ABZR86_RS06330 succinate dehydrogenase iron-sulfur subunit — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS00150 isocitrate lyase 0.68 RALBFv3_RS02635 succinate dehydrogenase iron-sulfur subunit — —
Ralstonia solanacearum UW163 0.67 UW163_RS13480 isocitrate lyase 0.68 UW163_RS11090 succinate dehydrogenase iron-sulfur subunit — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS17335 isocitrate lyase 0.68 RPSI07_RS14680 succinate dehydrogenase iron-sulfur subunit — —
Ralstonia solanacearum GMI1000 0.66 RS_RS06810 isocitrate lyase 0.68 RS_RS10015 succinate dehydrogenase iron-sulfur subunit — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS11590 isocitrate lyase 0.68 ABZR87_RS14555 succinate dehydrogenase iron-sulfur subunit — —
Azospirillum sp. SherDot2 0.59 MPMX19_05830 Isocitrate lyase 0.52 MPMX19_02408 Succinate dehydrogenase iron-sulfur subunit — —
Mycobacterium tuberculosis H37Rv 0.59 Rv0467 Isocitrate lyase Icl (isocitrase) (isocitratase) 0.38 Rv3319 Probable succinate dehydrogenase (iron-sulphur protein subunit) SdhB (succinic dehydrogenase) (fumarate reductase) (fumarate dehydrogenase) (fumaric hydrogenase) — —
Sinorhizobium meliloti 1021 0.57 SMc00768 isocitrate lyase 0.52 SMc02466 succinate dehydrogenase iron-sulfur subunit — —
Rhizobium sp. OAE497 0.57 ABIE40_RS03255 isocitrate lyase 0.51 ABIE40_RS18015 succinate dehydrogenase iron-sulfur subunit — —
Agrobacterium fabrum C58 0.57 Atu0607 isocitrate lyase 0.52 Atu2642 succinate dehydrogenase iron-sulfur — —
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS02595 isocitrate lyase 0.53 A4249_RS13435 succinate dehydrogenase iron-sulfur subunit — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS02405 isocitrate lyase 0.52 AZOBR_RS13950 succinate dehydrogenase iron-sulfur subunit — —
Caulobacter crescentus NA1000 0.17 CCNA_01841 isocitrate lyase 0.55 CCNA_03641 succinate dehydrogenase iron-sulfur protein — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_01841 isocitrate lyase 0.55 CCNA_03641 succinate dehydrogenase iron-sulfur protein — —
Acinetobacter radioresistens SK82 0.16 MPMX26_02319 Isocitrate lyase 0.66 MPMX26_00750 Succinate dehydrogenase iron-sulfur subunit — —
Alteromonas macleodii MIT1002 0.16 MIT1002_02831 Isocitrate lyase 0.84 MIT1002_01947 Succinate dehydrogenase iron-sulfur subunit — —
Rhodopseudomonas palustris CGA009 0.15 TX73_022775 isocitrate lyase 0.50 TX73_001120 succinate dehydrogenase iron-sulfur subunit — —
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_1963 Isocitrate lyase 0.56 Ga0059261_1332 succinate dehydrogenase and fumarate reductase iron-sulfur protein — —

Not shown: 2 genomes with orthologs for b4015 only; 12 genomes with orthologs for b0724 only