Homologs of TX73_000240 from Rhodopseudomonas palustris CGA009

ribonuclease D
SEED: Ribonuclease D related protein
KEGG: ribonuclease D

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodopseudomonas palustris CGA009 TX73_000240 ribonuclease D no data 100 100
o Bosea sp. OAE506 ABIE41_RS00145 ribonuclease D no data 75 100
o Sinorhizobium meliloti 1021 SMc00342 hypothetical protein no data 68 100
o Phaeobacter inhibens DSM 17395 PGA1_c36020 putative 3'-5'-exonuclease insig. 66 100
o Dinoroseobacter shibae DFL-12 Dshi_3589 3'-5' exonuclease (RefSeq) no data 69 100
o Azospirillum brasilense Sp245 AZOBR_RS18845 3'-5' exonuclease no data 64 100
o Rhizobium sp. OAE497 ABIE40_RS00155 ribonuclease D strong 65 100
o Agrobacterium fabrum C58 Atu4108 ribonuclease D strong 65 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS16055 ribonuclease D no data 67 100
o Azospirillum sp. SherDot2 MPMX19_02663 Ribonuclease D no data 63 100
o Rhodospirillum rubrum S1H Rru_A0015 3'-5' exonuclease (NCBI) no data 64 99
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2539 3'-5' exonuclease no data 64 100
o Caulobacter crescentus NA1000 CCNA_03717 ribonuclease D no data 62 100
o Caulobacter crescentus NA1000 Δfur CCNA_03717 ribonuclease D no data 62 100
o Magnetospirillum magneticum AMB-1 AMB_RS19900 ribonuclease D no data 61 100
o Synechococcus elongatus PCC 7942 Synpcc7942_0678 rnd 3'-5' exonuclease strong 51 98
  Azospirillum sp. SherDot2 MPMX19_00986 Ribonuclease D sig. 32 77
  Azospirillum brasilense Sp245 AZOBR_RS16220 ribonuclease D insig. 31 75
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08205 ribonuclease D no data 33 76
  Rhodospirillum rubrum S1H Rru_A2073 Ribonuclease D (NCBI) no data 34 76
  Dinoroseobacter shibae DFL-12 Dshi_1887 ribonuclease D (RefSeq) strong 34 75
  Rhizobium sp. OAE497 ABIE40_RS06640 ribonuclease D no data 30 86
  Agrobacterium fabrum C58 Atu1151 ribonuclease D no data 29 86
  Enterobacter sp. TBS_079 MPMX20_02710 Ribonuclease D strong 33 74
  Phaeobacter inhibens DSM 17395 PGA1_c13290 putative ribonuclease D no data 33 75
  Enterobacter asburiae PDN3 EX28DRAFT_0755 ribonuclease D strong 33 74
  Caulobacter crescentus NA1000 CCNA_01776 ribonuclease D no data 32 72
  Caulobacter crescentus NA1000 Δfur CCNA_01776 ribonuclease D no data 32 72
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3345 Ribonuclease D (EC 3.1.26.3) sig. 38 68
  Pseudomonas putida KT2440 PP_4591 Ribonuclease D sig. 37 69
  Escherichia coli BL21 ECD_01774 ribonuclease D insig. 33 72
  Escherichia coli BW25113 b1804 rnd ribonuclease D (NCBI) strong 33 72
  Escherichia fergusonii Becca EFB2_02196 Ribonuclease D insig. 33 74
  Escherichia coli ECOR27 NOLOHH_17125 rnd ribonuclease D no data 33 74
  Escherichia coli ECRC101 OKFHMN_26605 rnd ribonuclease D no data 33 74
  Escherichia coli ECRC101 MCAODC_18805 rnd ribonuclease D insig. 33 74
  Escherichia coli ECRC102 NIAGMN_01460 rnd ribonuclease D no data 33 74
  Escherichia coli ECRC62 BNILDI_15910 rnd ribonuclease D insig. 33 74
  Escherichia coli ECRC98 JDDGAC_01180 rnd ribonuclease D no data 33 74
  Escherichia coli ECRC99 KEDOAH_01505 rnd ribonuclease D no data 33 74
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01929 Ribonuclease D insig. 33 74
  Escherichia coli Nissle 1917 ECOLIN_RS10035 ribonuclease D no data 33 74
  Sinorhizobium meliloti 1021 SMc00622 ribonuclease D protein strong 29 89
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4496 Ribonuclease D (EC 3.1.26.3) insig. 35 75
  Escherichia coli ECOR38 HEPCGN_04995 rnd ribonuclease D cofit 32 74
  Pseudomonas fluorescens FW300-N2E3 AO353_17855 ribonuclease D strong 37 68
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2248.1 Ribonuclease D (EC 3.1.26.3) insig. 36 75
  Rahnella sp. WP5 EX31_RS10595 ribonuclease D insig. 34 72
  Pseudomonas stutzeri RCH2 Psest_2995 ribonuclease D no data 35 75
  Bosea sp. OAE506 ABIE41_RS16115 ribonuclease D no data 34 68
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2819 Ribonuclease D (EC 3.1.26.3) strong 33 74
  Pseudomonas fluorescens FW300-N2C3 AO356_04420 ribonuclease D sig. 34 75
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2727 Ribonuclease D (EC 3.1.26.3) sig. 35 68
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0222 ribonuclease D no data 29 75
  Pseudomonas syringae pv. syringae B728a Psyr_1563 Ribonuclease D strong 35 69
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1563 Ribonuclease D insig. 35 69
  Pseudomonas sp. RS175 PFR28_00712 Ribonuclease D insig. 33 75
  Rhodopseudomonas palustris CGA009 TX73_015755 ribonuclease D strong 29 76
  Magnetospirillum magneticum AMB-1 AMB_RS14275 ribonuclease D no data 29 76
  Pseudomonas sp. S08-1 OH686_05315 ribonuclease D strong 33 69
  Pseudomonas fluorescens SBW25 PFLU_RS07465 ribonuclease D insig. 33 75
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07465 ribonuclease D strong 33 75
  Shewanella amazonensis SB2B Sama_1933 ribonuclease D (RefSeq) strong 32 79
  Pseudomonas simiae WCS417 PS417_07375 ribonuclease D sig. 33 74
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18455 ribonuclease D insig. 31 78
  Dickeya dianthicola 67-19 HGI48_RS11255 ribonuclease D cofit 32 68
  Klebsiella michiganensis M5al BWI76_RS17795 ribonuclease D sig. 30 75
  Dickeya dadantii 3937 DDA3937_RS11220 ribonuclease D insig. 32 68
  Pectobacterium carotovorum WPP14 HER17_RS11270 ribonuclease D strong 32 71
  Vibrio cholerae E7946 ATCC 55056 CSW01_09900 ribonuclease D insig. 30 71
  Dickeya dianthicola ME23 DZA65_RS11600 ribonuclease D sig. 31 68
  Alteromonas macleodii MIT1002 MIT1002_02587 Ribonuclease D insig. 35 69
  Shewanella oneidensis MR-1 SO2580 rnd ribonuclease D (NCBI ptt file) sig. 30 80
  Serratia liquefaciens MT49 IAI46_14530 ribonuclease D insig. 28 72
  Kangiella aquimarina DSM 16071 B158DRAFT_1574 ribonuclease D insig. 31 74
  Rhodanobacter denitrificans MT42 LRK55_RS15770 ribonuclease D cofit 34 76
  Shewanella sp. ANA-3 Shewana3_2385 ribonuclease D (RefSeq) insig. 30 79
  Mycobacterium tuberculosis H37Rv Rv2681 Conserved hypothetical alanine rich protein sig. 39 54
  Erwinia tracheiphila SCR3 LU632_RS13130 rnd ribonuclease D insig. 31 71
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16010 ribonuclease D sig. 34 76
  Pantoea sp. MT58 IAI47_08840 ribonuclease D sig. 29 84
  Shewanella loihica PV-4 Shew_2187 ribonuclease D (RefSeq) insig. 28 81
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07350 ribonuclease D insig. 33 55
  Rhodanobacter sp. FW510-T8 OKGIIK_08985 Ribonuclease D insig. 31 75
  Acinetobacter radioresistens SK82 MPMX26_01642 Ribonuclease D strong 43 27
  Desulfovibrio vulgaris Hildenborough JW710 DVU1082 3- 5 exonuclease domain protein (TIGR) strong 35 45
  Bifidobacterium breve UCC2003 BBR_RS14490 ribonuclease D strong 28 97
  Caulobacter crescentus NA1000 CCNA_03577 DNA polymerase I strong 30 74
  Caulobacter crescentus NA1000 Δfur CCNA_03577 DNA polymerase I cofit 30 74
  Bosea sp. OAE506 ABIE41_RS03570 DNA polymerase I strong 29 82
  Magnetospirillum magneticum AMB-1 AMB_RS21305 DNA polymerase I no data 34 49
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2818 Ribonuclease D sig. 33 45
  Azospirillum brasilense Sp245 AZOBR_RS30685 DNA polymerase strong 29 74
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13690 3'-5' exonuclease strong 26 74
  Marinobacter adhaerens HP15 HP15_1882 ribonuclease D insig. 30 75
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS17015 DNA polymerase I strong 26 72
  Pseudomonas fluorescens FW300-N2E3 AO353_10930 DNA polymerase I strong 24 85
  Bacteroides thetaiotaomicron VPI-5482 BT4332 conserved hypothetical protein (NCBI ptt file) strong 32 43
  Pseudomonas stutzeri RCH2 Psest_4219 DNA polymerase I sig. 26 90
  Bacteroides ovatus ATCC 8483 BACOVA_05135 3'-5' exonuclease sig. 30 49