Homologs of RR42_RS00295 from Cupriavidus basilensis FW507-4G11

DEAD/DEAH box helicase
SEED: ATP-dependent 23S rRNA helicase DbpA
KEGG: ATP-independent RNA helicase DbpA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Cupriavidus basilensis FW507-4G11 RR42_RS00295 DEAD/DEAH box helicase sig. 100 100
o Burkholderia phytofirmans PsJN BPHYT_RS00150 DEAD/DEAH box helicase insig. 83 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS00065 ATP-dependent RNA helicase DbpA cofit 83 96
o Paraburkholderia graminis OAS925 ABIE53_000368 ATP-independent RNA helicase DbpA insig. 83 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02294 ATP-dependent RNA helicase DbpA insig. 82 95
o Ralstonia solanacearum PSI07 RPSI07_RS20905 ATP-dependent RNA helicase DbpA insig. 79 100
o Ralstonia solanacearum GMI1000 RS_RS03120 ATP-dependent RNA helicase DbpA insig. 79 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS19855 ATP-dependent RNA helicase DbpA insig. 79 100
o Variovorax sp. OAS795 ABID97_RS02340 ATP-dependent RNA helicase DbpA insig. 72 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5449 ATP-dependent 23S rRNA helicase DbpA insig. 72 100
o Variovorax sp. SCN45 GFF7138 ATP-dependent 23S rRNA helicase DbpA insig. 73 100
o Acidovorax sp. GW101-3H11 Ac3H11_4671 ATP-dependent 23S rRNA helicase DbpA insig. 74 97
o Dechlorosoma suillum PS Dsui_2946 DNA/RNA helicase, superfamily II insig. 70 100
o Pseudomonas stutzeri RCH2 Psest_0344 Superfamily II DNA and RNA helicases insig. 61 96
o Pseudomonas fluorescens FW300-N2E3 AO353_07850 ATP-dependent RNA helicase strong 60 96
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA insig. 59 96
o Pseudomonas putida KT2440 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA insig. 61 96
o Pseudomonas fluorescens FW300-N2C3 AO356_13770 ATP-dependent RNA helicase strong 60 96
o Pseudomonas syringae pv. syringae B728a Psyr_0516 ATP-dependent RNA helicase DbpA insig. 60 96
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0516 ATP-dependent RNA helicase DbpA insig. 60 96
o Pseudomonas sp. RS175 PFR28_04172 ATP-dependent RNA helicase DbpA sig. 60 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA strong 59 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA strong 59 96
o Pseudomonas fluorescens SBW25 PFLU_RS28020 ATP-dependent RNA helicase DbpA insig. 59 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS28020 ATP-dependent RNA helicase DbpA strong 59 96
o Pseudomonas simiae WCS417 PS417_26370 RNA helicase strong 58 96
o Pseudomonas sp. S08-1 OH686_14770 ATP-dependent 23S rRNA helicase DbpA insig. 60 96
o Serratia liquefaciens MT49 IAI46_14765 ATP-dependent RNA helicase DbpA insig. 56 96
o Castellaniella sp019104865 MT123 ABCV34_RS04635 ATP-dependent RNA helicase DbpA insig. 56 96
o Pectobacterium carotovorum WPP14 HER17_RS06775 ATP-dependent RNA helicase DbpA insig. 55 96
o Rahnella sp. WP5 EX31_RS24740 ATP-dependent RNA helicase DbpA insig. 56 96
o Shewanella loihica PV-4 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) insig. 54 98
o Shewanella amazonensis SB2B Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) insig. 53 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) insig. 53 96
o Vibrio cholerae E7946 ATCC 55056 CSW01_12980 ATP-dependent RNA helicase DbpA insig. 55 96
o Dickeya dadantii 3937 DDA3937_RS11045 ATP-dependent RNA helicase DbpA insig. 55 96
o Dickeya dianthicola 67-19 HGI48_RS11065 ATP-dependent RNA helicase DbpA insig. 54 96
o Shewanella sp. ANA-3 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) insig. 53 96
o Dickeya dianthicola ME23 DZA65_RS11470 ATP-dependent RNA helicase DbpA insig. 54 96
o Shewanella oneidensis MR-1 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) insig. 53 96
o Marinobacter adhaerens HP15 HP15_1329 DEAD/DEAH box helicase domain protein sig. 51 96
o Escherichia coli ECOR27 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA no data 54 96
o Escherichia coli ECOR38 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA insig. 53 96
o Escherichia fergusonii Becca EFB2_02584 ATP-dependent RNA helicase DbpA insig. 53 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05195 ATP-dependent RNA helicase DbpA insig. 52 96
o Escherichia coli ECRC62 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA insig. 53 96
o Escherichia coli Nissle 1917 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA no data 54 96
o Escherichia coli ECRC101 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA insig. 53 96
o Escherichia coli ECRC101 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA insig. 53 96
o Escherichia coli ECRC102 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA insig. 53 96
o Escherichia coli ECRC98 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA no data 53 96
o Escherichia coli ECRC99 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA no data 53 96
o Pantoea sp. MT58 IAI47_15055 ATP-dependent RNA helicase DbpA insig. 52 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2649 ATP-dependent 23S rRNA helicase DbpA insig. 53 96
o Escherichia coli BL21 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA insig. 53 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02338 ATP-dependent RNA helicase DbpA insig. 53 96
o Escherichia coli BW25113 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) insig. 53 96
o Enterobacter asburiae PDN3 EX28DRAFT_1006 Superfamily II DNA and RNA helicases insig. 53 96
o Klebsiella michiganensis M5al BWI76_RS12705 ATP-dependent RNA helicase insig. 52 96
o Enterobacter sp. TBS_079 MPMX20_02441 ATP-dependent RNA helicase DbpA insig. 52 96
o Lysobacter sp. OAE881 ABIE51_RS14930 ATP-dependent RNA helicase DbpA insig. 52 99
o Rhodanobacter sp. FW510-T8 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA insig. 52 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS10055 ATP-dependent RNA helicase DbpA insig. 51 96
o Rhodanobacter denitrificans MT42 LRK55_RS09695 ATP-dependent RNA helicase DbpA insig. 51 96
o Erwinia tracheiphila SCR3 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA insig. 52 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA sig. 51 96
o Alteromonas macleodii MIT1002 MIT1002_03748 ATP-independent RNA helicase DbpA no data 44 96
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06050 ATP-dependent RNA helicase insig. 41 96
  Desulfovibrio vulgaris Miyazaki F DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) no data 43 80
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05910 RNA helicase strong 46 72
  Desulfovibrio vulgaris Hildenborough JW710 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) strong 45 79
  Kangiella aquimarina DSM 16071 B158DRAFT_1850 ATP-dependent RNA helicase CsdA (EC 5.99.1.-) insig. 43 80
  Shewanella loihica PV-4 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 44 76
  Rhodanobacter sp. FW510-T8 OKGIIK_09705 ATP-dependent RNA helicase cofit 43 83
  Shewanella amazonensis SB2B Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) strong 43 79
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) insig. 42 83
  Dechlorosoma suillum PS Dsui_1351 DNA/RNA helicase, superfamily II strong 44 75
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3056 Superfamily II DNA and RNA helicases no data 45 72
  Shewanella oneidensis MR-1 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) strong 42 76
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02650 DEAD/DEAH box helicase insig. 42 83
  Rhodanobacter denitrificans MT42 LRK55_RS02405 DEAD/DEAH box helicase cofit 42 83
  Alteromonas macleodii MIT1002 MIT1002_00666 Cold-shock DEAD box protein A strong 42 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08990 DEAD/DEAH box helicase strong 44 79
  Pseudomonas sp. S08-1 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) cofit 43 76
  Paraburkholderia graminis OAS925 ABIE53_001438 ATP-dependent RNA helicase RhlE strong 43 79
  Shewanella sp. ANA-3 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 42 76
  Marinobacter adhaerens HP15 HP15_588 DEAD/DEAH box helicase domain protein sig. 42 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00308 Superfamily II DNA and RNA helicase strong 43 77
  Burkholderia phytofirmans PsJN BPHYT_RS06155 DEAD/DEAH box helicase strong 43 79
  Methanococcus maripaludis JJ MMJJ_RS02855 DEAD/DEAH box helicase strong 39 78
  Methanococcus maripaludis S2 MMP_RS02420 DEAD/DEAH box helicase no data 39 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS24485 DEAD/DEAH box helicase insig. 43 79
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 41 86
  Pseudomonas syringae pv. syringae B728a Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 41 86
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 41 86
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF222 ATP-dependent RNA helicase Bcep18194_A5658 insig. 41 79
  Vibrio cholerae E7946 ATCC 55056 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase insig. 41 76
  Pseudomonas sp. RS175 PFR28_00980 ATP-dependent RNA helicase DeaD insig. 40 86
  Pseudomonas putida KT2440 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD no data 40 86
  Variovorax sp. SCN45 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 strong 41 78