Homologs of PGA1_c08510 from Phaeobacter inhibens DSM 17395

RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup)
SEED: RNA polymerase sigma-70 factor, ECF family
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 100 100
o Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 43 92
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 47 80
o Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 47 83
o Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 47 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 45 80
o Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 45 80
o Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 44 80
o Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 43 85
  Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 43 80
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 44 79
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 46 71
o Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 41 80
  Pseudomonas fluorescens SBW25 PFLU_RS12745 RNA polymerase sigma factor insig. 42 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS12745 RNA polymerase sigma factor insig. 42 80
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 40 80
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02674 hypothetical protein cofit 43 80
o Paraburkholderia sabiae LMG 24235 QEN71_RS16180 RNA polymerase sigma factor insig. 46 80
o Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 41 81
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 39 81
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 36 77
o Rhodospirillum rubrum S1H Rru_A2537 Sigma-24 (FecI) (NCBI) insig. 42 62
  Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 38 79
  Azospirillum sp. SherDot2 MPMX19_04274 RNA polymerase sigma-H factor insig. 43 69
  Azospirillum sp. SherDot2 MPMX19_05475 hypothetical protein no data 41 73
  Azospirillum brasilense Sp245 AZOBR_RS31600 RNA polymerase insig. 36 77
o Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 34 82
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 34 85
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 34 89
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 37 68
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 30 75
o Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 32 76
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 32 72
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 32 72
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 32 79
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 34 72
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 35 82
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 31 79
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 30 71
o Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 27 87
o Pseudomonas fluorescens FW300-N2C3 AO356_10740 RNA polymerase subunit sigma insig. 36 83
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4018 RNA polymerase sigma-E factor insig. 36 83
o Pseudomonas sp. S08-1 OH686_11525 hypothetical protein cofit 34 71
  Pseudomonas orientalis W4I3 QF045_RS17270 sigma-70 family RNA polymerase sigma factor insig. 30 82
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 30 92
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 33 67
  Burkholderia phytofirmans PsJN BPHYT_RS22710 XRE family transcriptional regulator sig. 32 78
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 32 89
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 30 79
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor insig. 34 89
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 31 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 31 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 86
  Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 39 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 39 80
  Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 24 80
  Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 30 76
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 36 86
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 31 79
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 26 83
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 30 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 30 79
  Bacteroides ovatus ATCC 8483 BACOVA_01909 Sigma-70 region 2 sig. 30 67
o Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 29 83
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 32 77
  Rhodanobacter sp. FW510-T8 OKGIIK_13920 RNA polymerase subunit sigma insig. 37 62
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 32 78
  Synechococcus elongatus PCC 7942 Synpcc7942_2004 sigI RNA polymerase sigma factor insig. 32 80
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 35 74
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00391 RNA polymerase sigma-H factor cofit 36 87
  Shewanella sp. ANA-3 Shewana3_3152 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) cofit 28 88
  Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 33 68
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2666 RNA polymerase sigma-70 factor, ECF family insig. 34 79
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3601.1 RNA polymerase sigma-70 factor insig. 30 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 30 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 38 59
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 29 83
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02680 RNA polymerase subunit sigma-70 insig. 28 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 33 74
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13970 RNA polymerase sigma factor cofit 25 81
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 29 83
o Shewanella oneidensis MR-1 SO3551 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 28 88
  Phocaeicola dorei CL03T12C01 ABI39_RS04680 RNA polymerase sigma factor insig. 31 63
o Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 28 87
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12120 RNA polymerase sigma factor strong 31 63
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1738 RNA polymerase sigma-54 factor RpoN insig. 32 83
  Pseudomonas segetis P6 ACVTMO_RS12985 sigX RNA polymerase sigma factor SigX no data 32 64
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 32 85
  Dinoroseobacter shibae DFL-12 Dshi_2428 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 30 80
o Shewanella loihica PV-4 Shew_1231 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 84
  Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 30 64
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 29 83
  Variovorax sp. SCN45 GFF4503 RNA polymerase sigma factor insig. 28 87
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 28 77
  Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 27 79
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00665 RNA polymerase subunit sigma-24 strong 25 76
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 30 68
  Pseudomonas fluorescens SBW25 PFLU_RS13305 sigma-70 family RNA polymerase sigma factor insig. 28 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13305 sigma-70 family RNA polymerase sigma factor sig. 28 77
  Pseudomonas segetis P6 ACVTMO_RS06730 sigma-70 family RNA polymerase sigma factor insig. 26 76