Homologs of GFF4544 from Variovorax sp. SCN45

RNA polymerase sigma factor RpoE
SEED: RNA polymerase sigma factor RpoE
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 100 100
o Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 66 99
o Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 65 96
o Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 65 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 64 95
o Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 63 95
o Pseudomonas fluorescens SBW25 PFLU_RS12745 RNA polymerase sigma factor insig. 63 95
o Pseudomonas fluorescens SBW25-INTG PFLU_RS12745 RNA polymerase sigma factor insig. 63 95
o Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 60 99
o Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 60 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 62 93
o Pseudomonas lactucae CFBP13502 GEMAOFIL_02674 hypothetical protein cofit 66 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS16180 RNA polymerase sigma factor insig. 66 96
o Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 55 96
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 46 94
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 44 97
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 47 93
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 40 96
o Azospirillum brasilense Sp245 AZOBR_RS31600 RNA polymerase insig. 46 95
  Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 42 93
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 45 94
o Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 42 95
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 43 92
  Rhodospirillum rubrum S1H Rru_A2537 Sigma-24 (FecI) (NCBI) insig. 43 78
  Azospirillum sp. SherDot2 MPMX19_05475 hypothetical protein no data 40 84
  Azospirillum sp. SherDot2 MPMX19_04274 RNA polymerase sigma-H factor insig. 41 84
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 36 90
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 35 95
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 34 93
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 34 95
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 34 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 33 96
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 35 93
  Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 37 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 35 89
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 30 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04360 sigma-70 family RNA polymerase sigma factor insig. 32 89
  Burkholderia phytofirmans PsJN BPHYT_RS22710 XRE family transcriptional regulator sig. 33 96
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 32 92
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 32 87
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 35 85
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 32 90
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 31 92
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 38 86
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 34 92
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 28 93
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 30 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 30 87
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 34 91
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS18950 sigma-70 family RNA polymerase sigma factor insig. 34 92
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor cofit 30 90
  Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 29 96
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 28 87
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 30 87
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 35 91
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 32 87
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 35 87
  Kangiella aquimarina DSM 16071 B158DRAFT_0015 RNA polymerase sigma factor, sigma-70 family insig. 33 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3837.1 RNA polymerase sigma-54 factor RpoN insig. 35 88
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 33 89
  Sphingobium sp. HT1-2 GFF4485 RNA polymerase sigma factor cnrH cofit 32 89
  Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 31 89
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 31 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15730 RNA polymerase sigma factor sig. 27 86
  Bacteroides thetaiotaomicron VPI-5482 BT4647 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 33 75
  Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 32 87
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 31 95
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22010 RNA polymerase sigma factor insig. 30 97
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 29 95
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 28 86
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 31 89
  Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 30 90
  Rhodanobacter sp. FW510-T8 OKGIIK_01380 rpoE RNA polymerase subunit sigma-24 insig. 36 80
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 32 91
  Pseudomonas aeruginosa MRSN321 DY961_RS08690 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 32 96
  Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS strong 32 96
  Pseudomonas aeruginosa PUPa3 DQ20_RS44160 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 32 96
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 37 85
  Rhodanobacter denitrificans MT42 LRK55_RS05200 sigma-70 family RNA polymerase sigma factor insig. 34 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS05425 sigma-70 family RNA polymerase sigma factor insig. 34 80
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 31 90
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 30 90
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 30 93
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 30 93
  Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 31 90
  Pseudomonas segetis P6 ACVTMO_RS06940 rpoE RNA polymerase sigma factor RpoE strong 30 93
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 30 90
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 30 93
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS04580 sigma-70 family RNA polymerase sigma factor insig. 35 80
  Phocaeicola dorei CL03T12C01 ABI39_RS11710 RNA polymerase sigma factor insig. 27 86
  Mycobacterium tuberculosis H37Rv Rv0182c Probable alternative RNA polymerase sigma factor SigG (RNA polymerase ECF type sigma factor) insig. 34 87
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 29 93
  Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 29 95
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1512.1 RNA polymerase sigma-70 factor insig. 32 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 29 93
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 35 81
  Synechocystis sp000284455 PCC 6803 SGL_RS06480 sigma-70 family RNA polymerase sigma factor no data 32 78
  Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 31 95
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 30 90
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 30 90