Homologs of GFF3530 from Variovorax sp. SCN45

Pseudouridine synthase
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 100 100
o Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 93 100
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 72 96
  Ralstonia sp. UNC404CL21Col ABZR87_RS11810 pseudouridine synthase insig. 62 96
  Cupriavidus basilensis FW507-4G11 RR42_RS11890 16S rRNA pseudouridylate synthase insig. 61 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 64 96
  Ralstonia solanacearum GMI1000 RS_RS07030 16S rRNA uridine-516 pseudouridylate synthase sig. 63 96
  Ralstonia solanacearum PSI07 RPSI07_RS17115 16S rRNA uridine-516 pseudouridylate synthase cofit 63 96
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS00360 16S rRNA pseudouridylate synthase sig. 62 96
  Ralstonia solanacearum UW163 UW163_RS13690 16S rRNA pseudouridylate synthase insig. 62 96
o Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 63 96
  Paraburkholderia graminis OAS925 ABIE53_002509 23S rRNA pseudouridine2604 synthase insig. 62 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00606 23S rRNA pseudouridine2604 synthase insig. 63 94
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 60 97
o Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 58 100
  Methylophilus sp. DMC18 GFF2067 hypothetical protein insig. 60 96
  Paraburkholderia sabiae LMG 24235 QEN71_RS06405 pseudouridine synthase cofit 62 96
o Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 55 96
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 44 96
o Lysobacter sp. OAE881 ABIE51_RS13020 rRNA pseudouridine synthase insig. 40 97
o Rhodanobacter denitrificans MT42 LRK55_RS15640 rRNA pseudouridine synthase insig. 38 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15885 rRNA pseudouridine synthase insig. 38 100
o Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 41 95
o Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 41 95
o Rhodanobacter sp. FW510-T8 OKGIIK_04535 rsuA RNA-binding protein insig. 36 98
  Pseudomonas aeruginosa MRSN321 DY961_RS06900 rRNA pseudouridine synthase sig. 35 97
  Pseudomonas aeruginosa PUPa3 DQ20_RS45935 rRNA pseudouridine synthase insig. 35 97
  Pseudomonas aeruginosa PA14 IKLFDK_05110 RNA-binding protein strong 35 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1469.1 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 35 97
  Pseudomonas syringae pv. syringae B728a Psyr_1390 RNA-binding S4 insig. 35 97
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1390 RNA-binding S4 insig. 35 97
  Acidovorax sp. GW101-3H11 Ac3H11_1984 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 35 100
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4655 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 36 97
  Pseudomonas fluorescens FW300-N2E3 AO353_16865 RNA-binding protein insig. 35 97
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3158 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 34 97
  Pseudomonas fluorescens FW300-N2C3 AO356_05610 RNA-binding protein insig. 36 97
  Pseudomonas sp. RS175 PFR28_00484 Dual-specificity RNA pseudouridine synthase RluF insig. 35 97
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01345 Dual-specificity RNA pseudouridine synthase RluF cofit 36 97
  Pseudomonas orientalis W4I3 QF045_RS08785 rRNA pseudouridine synthase no data 36 97
  Pseudomonas fluorescens SBW25 PFLU_RS05940 RNA-binding protein S4 insig. 35 97
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05940 RNA-binding protein S4 insig. 35 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS18320 rRNA pseudouridine synthase insig. 35 97
  Pseudomonas sp. S08-1 OH686_05400 Pseudouridine synthase insig. 33 97
  Pseudomonas simiae WCS417 PS417_05870 RNA-binding protein S4 insig. 35 97
  Pseudomonas segetis P6 ACVTMO_RS16405 rRNA pseudouridine synthase insig. 34 100
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 31 96
  Pseudomonas stutzeri RCH2 Psest_2917 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases insig. 32 97
  Pseudomonas sp. DMC3 GFF2124 Ribosomal small subunit pseudouridine synthase A cofit 36 97
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 34 95
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 34 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 33 95
o Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 33 95
  Klebsiella pneumoniae MKP103 KDGMDA_10215 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Rhodanobacter sp. FW510-T8 OKGIIK_16610 Pseudouridine synthase insig. 34 95
  Escherichia coli BL21 ECD_03894 23S rRNA pseudouridine(2604) synthase insig. 35 97
  Escherichia coli BW25113 b4022 yjbC 23S rRNA pseudouridine synthase (NCBI) sig. 35 97
  Escherichia fergusonii Becca EFB2_04580 Dual-specificity RNA pseudouridine synthase RluF insig. 34 97
  Escherichia coli Nissle 1917 ECOLIN_RS23225 23S rRNA pseudouridine(2604) synthase RluF insig. 34 97
  Escherichia coli ECOR38 HEPCGN_11820 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Escherichia coli ECRC100 OKFHMN_13190 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 35 97
  Escherichia coli ECRC101 MCAODC_03690 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Escherichia coli ECRC102 NIAGMN_10940 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Escherichia coli ECRC62 BNILDI_06155 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Escherichia coli ECRC98 JDDGAC_16815 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Escherichia coli ECRC99 KEDOAH_14970 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 35 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04027 23S rRNA pseudouridine(2604) synthase insig. 35 97
  Escherichia coli ECOR27 NOLOHH_05365 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 35 97
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 34 97
  Pseudomonas sp. SVBP6 COO64_RS19990 rRNA pseudouridine synthase insig. 33 97
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 34 97
  Variovorax sp. OAS795 ABID97_RS06090 RNA pseudouridine synthase cofit 33 98
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS01375 pseudouridine synthase insig. 33 95
  Pseudomonas putida KT2440 PP_1191 S4 domain protein insig. 31 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 34 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF631 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 33 100
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2980 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 34 89
  Klebsiella michiganensis M5al BWI76_RS01755 23S rRNA pseudouridine synthase F insig. 34 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 32 95
  Variovorax sp. SCN45 GFF4531 Pseudouridine synthase insig. 34 97
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 32 95
  Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 34 95
  Serratia liquefaciens MT49 IAI46_21130 23S rRNA pseudouridine(2604) synthase RluF insig. 32 99
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS16400 pseudouridine synthase cofit 32 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19110 23S rRNA pseudouridine synthase F insig. 29 96
o Cellulophaga baltica 18 M666_RS18620 23S rRNA pseudouridine(2604) synthase RluF insig. 32 95
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 31 96
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS07735 23S rRNA pseudouridine(2604) synthase RluF cofit 31 96
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 30 96
  Desulfovibrio vulgaris Miyazaki F DvMF_0369 pseudouridine synthase (RefSeq) sig. 34 95
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_08325 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 29 96
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 32 97
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 29 96
  Erwinia amylovora T8 OLJFJH_05535 23S rRNA pseudouridine(2604) synthase RluF sig. 32 99
  Serratia liquefaciens MT49 IAI46_19150 23S rRNA pseudouridine(2604) synthase RluF insig. 30 96
  Pseudomonas sp. BP01 JOY50_RS01950 rRNA pseudouridine synthase insig. 29 97
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 29 95
  Pseudomonas stutzeri RCH2 Psest_1999 pseudouridine synthase insig. 33 99
  Pseudomonas fluorescens FW300-N2E3 AO353_18540 pseudouridine synthase strong 32 95
  Pseudomonas sp. DMC3 GFF2404 hypothetical protein insig. 33 95
  Pseudomonas syringae pv. syringae B728a Psyr_3581 ribosomal large subunit pseudouridine synthase B strong 33 95