Homologs of PS417_16520 from Pseudomonas simiae WCS417

cold-shock protein
SEED: Cold shock protein CspD
KEGG: cold shock protein (beta-ribbon, CspA family)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_16520 cold-shock protein insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS18560 cold shock domain-containing protein CspD insig. 84 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS18560 cold shock domain-containing protein CspD insig. 84 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03631 hypothetical protein cofit 80 100
o Pseudomonas sp. SVBP6 COO64_RS24210 cspD cold shock domain-containing protein CspD insig. 74 87
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2644 Cold shock protein CspD insig. 81 76
  Pseudomonas fluorescens FW300-N2E3 AO353_27685 cold-shock protein strong 83 76
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_290 Cold shock protein CspD insig. 71 91
o Pseudomonas sp. RS175 PFR28_02615 hypothetical protein insig. 71 87
o Pseudomonas segetis P6 ACVTMO_RS12625 cspD cold shock domain-containing protein CspD insig. 70 86
o Pseudomonas sp. S08-1 OH686_00225 cold shock domain protein CspD insig. 70 86
o Pseudomonas sp. BP01 JOY50_RS06565 cspD cold shock domain-containing protein CspD no data 87 66
o Pseudomonas fluorescens FW300-N2C3 AO356_22140 cold-shock protein insig. 76 80
o Pseudomonas putida KT2440 PP_4010 DNA replication inhibitor strong 85 66
o Pseudomonas aeruginosa MRSN321 DY961_RS04110 cspD;go_process=negative cold shock domain-containing protein CspD strong 83 68
o Pseudomonas aeruginosa PA14 IKLFDK_13160 cold shock domain-containing protein CspD strong 83 68
o Pseudomonas aeruginosa PUPa3 DQ20_RS35135 cspD;go_process=negative cold shock domain-containing protein CspD strong 83 68
o Pseudomonas sp. DMC3 GFF1523 Cold shock-like protein CspD cofit 63 92
o Pseudomonas stutzeri RCH2 Psest_2025 cold shock domain protein CspD strong 64 84
  Pseudomonas orientalis W4I3 QF045_RS18275 cold shock domain-containing protein CspD insig. 73 72
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4053 Cold shock protein CspD insig. 60 86
  Escherichia coli BL21 ECD_00885 inhibitor of DNA replication, cold shock protein-like protein no data 68 75
  Escherichia fergusonii Becca EFB2_03181 Cold shock-like protein CspD insig. 68 75
  Escherichia coli ECOR27 NOLOHH_22195 cspD cold shock-like protein CspD insig. 68 75
  Escherichia coli ECOR38 HEPCGN_22885 cspD cold shock-like protein CspD insig. 68 75
  Escherichia coli ECRC100 OKFHMN_05800 cspD cold shock-like protein CspD no data 68 75
  Escherichia coli ECRC101 MCAODC_25015 cspD cold shock-like protein CspD insig. 68 75
  Escherichia coli ECRC102 NIAGMN_03840 cspD cold shock-like protein CspD insig. 68 75
  Escherichia coli ECRC62 BNILDI_20450 cspD cold shock-like protein CspD insig. 68 75
  Escherichia coli ECRC98 JDDGAC_09435 cspD cold shock-like protein CspD insig. 68 75
  Escherichia coli ECRC99 KEDOAH_22110 cspD cold shock-like protein CspD no data 68 75
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02788 Cold shock-like protein CspD no data 68 75
  Escherichia coli Nissle 1917 ECOLIN_RS04685 cold shock-like protein CspD no data 68 75
  Escherichia coli BW25113 b0880 cspD cold shock protein homolog (NCBI) insig. 68 75
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4903 Cold shock protein CspD no data 67 76
o Pseudomonas syringae pv. syringae B728a Psyr_3185 cold-shock DNA-binding protein family no data 66 82
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3185 cold-shock DNA-binding protein family no data 66 82
  Klebsiella pneumoniae MKP103 KDGMDA_17850 cold shock-like protein CspD no data 67 76
  Klebsiella michiganensis M5al BWI76_RS09605 cold-shock protein no data 64 79
  Enterobacter asburiae PDN3 EX28DRAFT_2052 cold shock domain protein CspD insig. 67 76
  Serratia liquefaciens MT49 IAI46_08505 cold shock-like protein CspD insig. 66 76
  Marinobacter adhaerens HP15 HP15_2082 cold-shock DNA-binding domain protein cofit 64 78
  Enterobacter sp. TBS_079 MPMX20_01542 Cold shock-like protein CspD strong 66 76
  Alteromonas macleodii MIT1002 MIT1002_01832 Cold shock-like protein CspD cofit 70 66
  Pectobacterium carotovorum WPP14 HER17_RS12410 cold shock-like protein CspD insig. 66 74
  Shewanella sp. ANA-3 Shewana3_1751 cold-shock DNA-binding protein family protein (RefSeq) strong 63 71
  Shewanella oneidensis MR-1 SO2628 cspD stress response protein CspD (NCBI ptt file) strong 63 71
  Shewanella amazonensis SB2B Sama_2058 cold-shock DNA-binding domain-containing protein (RefSeq) sig. 62 71
  Shewanella loihica PV-4 Shew_1564 cold-shock DNA-binding domain-containing protein (RefSeq) sig. 63 71
  Vibrio cholerae E7946 ATCC 55056 CSW01_05795 cold-shock protein CspD insig. 57 74
  Dickeya dadantii 3937 DDA3937_RS09550 cold shock-like protein CspD sig. 63 76
  Rahnella sp. WP5 EX31_RS18570 cold shock-like protein CspD strong 60 76
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS04375 cold shock-like protein CspD cofit 60 76
  Dickeya dianthicola 67-19 HGI48_RS09565 cold shock-like protein CspD cofit 61 76
  Dickeya dianthicola ME23 DZA65_RS09875 cold shock-like protein CspD insig. 61 76
  Burkholderia phytofirmans PsJN BPHYT_RS15720 cold-shock protein no data 64 66
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04084 cold-shock DNA-binding protein family no data 64 66
  Paraburkholderia graminis OAS925 ABIE53_003308 CspA family cold shock protein no data 64 66
  Dechlorosoma suillum PS Dsui_0007 cold shock protein insig. 64 66
  Paraburkholderia sabiae LMG 24235 QEN71_RS02995 cold shock domain-containing protein CspD sig. 60 68
  Pantoea sp. MT58 IAI47_12955 cold shock-like protein CspD insig. 63 70
  Herbaspirillum seropedicae SmR1 HSERO_RS07020 cold-shock protein no data 62 66
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18735 cold-shock protein insig. 64 66
  Ralstonia solanacearum GMI1000 RS_RS22215 cold-shock protein sig. 64 66
  Ralstonia solanacearum PSI07 RPSI07_RS04860 cold-shock protein no data 64 66
  Ralstonia solanacearum UW163 UW163_RS20395 cold-shock protein insig. 64 66
  Cupriavidus basilensis FW507-4G11 RR42_RS17115 cold-shock protein no data 64 66
  Ralstonia solanacearum GMI1000 RS_RS12380 cold-shock protein no data 62 66
  Castellaniella sp019104865 MT123 ABCV34_RS05315 cold-shock protein insig. 61 70
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04820 cold-shock protein no data 61 66
  Ralstonia solanacearum UW163 UW163_RS08850 cold-shock protein no data 61 66
  Methylophilus sp. DMC18 GFF276 Cold shock-like protein CspA insig. 57 66
  Ralstonia solanacearum PSI07 RPSI07_RS12565 cold-shock protein no data 60 67
  Kangiella aquimarina DSM 16071 B158DRAFT_1826 Cold shock proteins strong 58 73
  Burkholderia phytofirmans PsJN BPHYT_RS17545 cold-shock protein sig. 58 70
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05686 cold-shock DNA-binding protein family no data 58 70
  Paraburkholderia graminis OAS925 ABIE53_003669 CspA family cold shock protein insig. 58 70
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3660.1 Cold shock protein CspD insig. 54 71
  Ralstonia sp. UNC404CL21Col ABZR87_RS00445 cold-shock protein strong 58 67
  Ralstonia sp. UNC404CL21Col ABZR87_RS19675 cold-shock protein insig. 59 66
  Paraburkholderia sabiae LMG 24235 QEN71_RS35875 cold-shock protein insig. 59 66
  Shewanella loihica PV-4 Shew_1165 cold-shock DNA-binding domain-containing protein (RefSeq) no data 59 66
  Lysobacter sp. OAE881 ABIE51_RS13800 cold-shock protein strong 53 70
  Alteromonas macleodii MIT1002 MIT1002_03628 Cold shock-like protein CspG cofit 52 73
  Methylophilus sp. DMC18 GFF958 Cold shock protein CspV insig. 52 73
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4727 Cold shock protein CspD insig. 58 70
  Paraburkholderia sabiae LMG 24235 QEN71_RS27700 cold-shock protein no data 57 66
  Ralstonia sp. UNC404CL21Col ABZR87_RS16270 cold-shock protein strong 59 66
  Pectobacterium carotovorum WPP14 HER17_RS15290 transcription antiterminator/RNA stability regulator CspE cofit 54 73
  Ralstonia solanacearum GMI1000 RS_RS17205 cold-shock protein strong 57 66
  Ralstonia solanacearum PSI07 RPSI07_RS00010 cold-shock protein no data 57 66
  Pseudomonas fluorescens FW300-N2C3 AO356_14005 cold-shock protein insig. 56 70
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4536 Cold shock protein CspE no data 54 73
  Escherichia coli BL21 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein insig. 56 70
  Escherichia fergusonii Becca EFB2_03468 Cold shock-like protein CspE insig. 56 70
  Escherichia coli ECOR27 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE sig. 56 70
  Escherichia coli ECOR38 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE sig. 56 70
  Escherichia coli ECRC100 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE cofit 56 70
  Escherichia coli ECRC101 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE strong 56 70
  Escherichia coli ECRC102 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE cofit 56 70