Homologs of AMB_RS04540 from Magnetospirillum magneticum AMB-1

C4-dicarboxylate ABC transporter
SEED: TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Magnetospirillum magneticum AMB-1 AMB_RS04540 C4-dicarboxylate ABC transporter insig. 100 100
o Pseudomonas sp. DMC3 GFF1142 hypothetical protein cofit 60 95
o Pseudomonas aeruginosa MRSN321 DY961_RS26025 TRAP transporter permease insig. 61 95
o Pseudomonas aeruginosa PUPa3 DQ20_RS58450 TRAP transporter permease insig. 61 95
o Pseudomonas sp. RS175 PFR28_02586 hypothetical protein insig. 60 96
o Xanthobacter sp. DMC5 GFF4729 hypothetical protein insig. 60 98
o Shewanella oneidensis MR-1 SO0455 hypothetical transporter (NCBI ptt file) strong 59 96
o Pseudomonas aeruginosa PA14 IKLFDK_25690 C4-dicarboxylate ABC transporter insig. 60 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_320 TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 insig. 60 96
o Pseudomonas putida KT2440 PP_3955 permease insig. 60 95
o Shewanella sp. ANA-3 Shewana3_0456 TRAP transporter, 4TM/12TM fusion protein (RefSeq) insig. 57 96
o Pseudomonas stutzeri RCH2 Psest_0084 alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data) strong 60 95
o Azospirillum sp. SherDot2 MPMX19_05256 hypothetical protein insig. 57 99
o Pseudomonas segetis P6 ACVTMO_RS01045 TRAP transporter permease insig. 58 97
o Castellaniella sp019104865 MT123 ABCV34_RS12540 TRAP transporter permease cofit 61 95
o Azospirillum brasilense Sp245 AZOBR_RS08575 C4-dicarboxylate ABC transporter insig. 58 99
o Rhodopseudomonas palustris CGA009 TX73_023415 TRAP transporter permease insig. 53 98
o Bosea sp. OAE506 ABIE41_RS05850 TRAP transporter permease insig. 54 93
o Serratia liquefaciens MT49 IAI46_10120 TRAP transporter permease insig. 36 100
  Bosea sp. OAE506 ABIE41_RS03160 TRAP transporter permease insig. 36 94
  Azospirillum brasilense Sp245 AZOBR_RS16500 C4-dicarboxylate ABC transporter permease insig. 35 99
  Marinobacter adhaerens HP15 HP15_1070 TRAP-type uncharacterized transport system, fused permease component sig. 35 91
  Marinobacter adhaerens HP15 HP15_723 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data) strong 36 82
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4038 TRAP-type uncharacterized transport system, fused permease component insig. 32 93
  Bosea sp. OAE506 ABIE41_RS02510 TRAP transporter fused permease subunit insig. 34 90
  Dinoroseobacter shibae DFL-12 Dshi_1194 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data) strong 36 80
  Rhodopseudomonas palustris CGA009 TX73_017905 TRAP transporter permease insig. 34 72
  Vibrio cholerae E7946 ATCC 55056 CSW01_02250 DUF3394 domain-containing protein insig. 41 51
  Pseudomonas stutzeri RCH2 Psest_0197 TRAP transporter, 4TM/12TM fusion protein strong 45 45
  Dinoroseobacter shibae DFL-12 Dshi_0994 TRAP transporter, 4TM/12TM fusion protein (RefSeq) insig. 30 88
  Pseudomonas segetis P6 ACVTMO_RS01425 TRAP transporter permease insig. 42 48
  Vibrio cholerae E7946 ATCC 55056 CSW01_14735 C4-dicarboxylate ABC transporter permease insig. 31 78
  Sinorhizobium meliloti 1021 SM_b20291 hypothetical protein insig. 42 47
  Phaeobacter inhibens DSM 17395 PGA1_c16170 TRAP transporter, 4TM/12TM fusion protein strong 41 45
  Dinoroseobacter shibae DFL-12 Dshi_1444 TRAP transporter, 4TM/12TM fusion protein (RefSeq) strong 44 41
  Dinoroseobacter shibae DFL-12 Dshi_0646 TRAP transporter, 4TM/12TM fusion protein (RefSeq) insig. 31 64
  Dinoroseobacter shibae DFL-12 Dshi_2287 TRAP transporter, 4TM/12TM fusion protein (RefSeq) insig. 31 73
  Dinoroseobacter shibae DFL-12 Dshi_1088 TRAP transporter, 4TM/12TM fusion protein (RefSeq) insig. 33 53
  Phaeobacter inhibens DSM 17395 PGA1_c16170 TRAP transporter, 4TM/12TM fusion protein strong 38 30
  Dinoroseobacter shibae DFL-12 Dshi_1444 TRAP transporter, 4TM/12TM fusion protein (RefSeq) strong 41 31
  Pseudomonas segetis P6 ACVTMO_RS01425 TRAP transporter permease insig. 37 30
  Sinorhizobium meliloti 1021 SM_b20291 hypothetical protein insig. 38 29
  Vibrio cholerae E7946 ATCC 55056 CSW01_02250 DUF3394 domain-containing protein insig. 42 29
  Pseudomonas stutzeri RCH2 Psest_0197 TRAP transporter, 4TM/12TM fusion protein strong 37 30
  Caulobacter crescentus NA1000 CCNA_01515 C4-dicarboxylate transporter large subunit sig. 30 22
  Caulobacter crescentus NA1000 Δfur CCNA_01515 C4-dicarboxylate transporter large subunit cofit 30 22
  Agrobacterium fabrum C58 Atu3135 ABC transporter permease strong 30 23
  Enterobacter sp. TBS_079 MPMX20_04347 C4-dicarboxylate TRAP transporter large permease protein DctM insig. 32 23
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03770 C4-dicarboxylate TRAP transporter large permease protein DctM no data 34 23
  Variovorax sp. OAS795 ABID97_RS26070 TRAP transporter large permease subunit no data 30 30
  Pseudomonas simiae WCS417 PS417_17380 membrane protein insig. 33 23
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5230 TRAP-type C4-dicarboxylate transport system, large permease component insig. 30 31
  Pseudomonas orientalis W4I3 QF045_RS19040 TRAP transporter large permease insig. 33 23
  Variovorax sp. SCN45 GFF1516 TRAP-type C4-dicarboxylate transport system, large permease component insig. 29 30
  Pseudomonas fluorescens SBW25 PFLU_RS19305 TRAP transporter large permease insig. 33 23
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19305 TRAP transporter large permease insig. 33 23
  Pseudomonas syringae pv. syringae B728a Psyr_0898 TRAP dicarboxylate transporter, DctM subunit insig. 31 23
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0898 TRAP dicarboxylate transporter, DctM subunit insig. 31 23
  Pseudomonas fluorescens FW300-N2C3 AO356_23045 hypothetical protein insig. 32 23
  Pseudomonas sp. DMC3 GFF1614 C4-dicarboxylate TRAP transporter large permease protein DctM insig. 32 23
  Pseudomonas sp. BP01 JOY50_RS02045 TRAP transporter large permease insig. 31 23
  Castellaniella sp019104865 MT123 ABCV34_RS12260 TRAP transporter large permease insig. 30 26
  Pseudomonas putida KT2440 PP_1167 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) strong 31 23
  Dinoroseobacter shibae DFL-12 Dshi_2753 TRAP dicarboxylate transporter, DctM subunit (RefSeq) insig. 29 26
  Pantoea sp. MT58 IAI47_03220 TRAP transporter large permease insig. 30 23
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2429 TRAP-type C4-dicarboxylate transport system, large permease component insig. 29 30
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16475 TRAP transporter large permease cofit 30 23
  Acidovorax sp. GW101-3H11 Ac3H11_3955 TRAP-type C4-dicarboxylate transport system, large permease component insig. 30 23
  Xanthobacter sp. DMC5 GFF2559 C4-dicarboxylate TRAP transporter large permease protein DctM insig. 29 23
  Synechocystis sp000284455 PCC 6803 SGL_RS10910 TRAP transporter large permease subunit insig. 30 21
  Pseudomonas sp. RS175 PFR28_02440 C4-dicarboxylate TRAP transporter large permease protein DctM strong 29 23
  Bosea sp. OAE506 ABIE41_RS07820 TRAP transporter large permease insig. 30 22
  Magnetospirillum magneticum AMB-1 AMB_RS13000 C4-dicarboxylate ABC transporter insig. 29 28
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5573 TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 cofit 28 26
  Bosea sp. OAE506 ABIE41_RS13025 TRAP transporter large permease subunit strong 25 55
  Shewanella amazonensis SB2B Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component (from data) strong 33 21
  Shewanella oneidensis MR-1 SO3136 dctM C4-dicarboxylate transport protein (NCBI ptt file) insig. 31 21
  Pseudomonas stutzeri RCH2 Psest_0361 TRAP transporter, DctM subunit insig. 30 23
  Acidovorax sp. GW101-3H11 Ac3H11_3520 TRAP-type C4-dicarboxylate transport system, large permease component insig. 29 26
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_485 TRAP-type C4-dicarboxylate transport system, large permease component insig. 28 23
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.203.1 TRAP-type C4-dicarboxylate transport system, large permease component insig. 33 18
  Sinorhizobium meliloti 1021 SM_b20297 permease insig. 25 55
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5526 TRAP-type C4-dicarboxylate transport system, large permease component cofit 39 16
  Desulfovibrio vulgaris Miyazaki F DvMF_2137 TRAP dicarboxylate transporter, DctM subunit (RefSeq) cofit 33 20
  Pectobacterium carotovorum WPP14 HER17_RS19685 TRAP transporter large permease cofit 31 23
  Dinoroseobacter shibae DFL-12 Dshi_0956 TRAP dicarboxylate transporter, DctM subunit (RefSeq) insig. 31 18
  Agrobacterium fabrum C58 Atu2743 hypothetical protein insig. 29 24
  Rahnella sp. WP5 EX31_RS08020 TRAP transporter large permease insig. 34 16
  Pseudomonas segetis P6 ACVTMO_RS20185 TRAP transporter large permease insig. 29 23
  Dechlorosoma suillum PS Dsui_3153 TRAP transporter, DctM subunit sig. 30 28
  Castellaniella sp019104865 MT123 ABCV34_RS11535 TRAP transporter large permease subunit insig. 29 26
  Dechlorosoma suillum PS Dsui_1262 TRAP transporter, DctM subunit cofit 29 28
  Shewanella loihica PV-4 Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) cofit 32 21
  Castellaniella sp019104865 MT123 ABCV34_RS13670 TRAP transporter large permease subunit insig. 30 27
  Azospirillum brasilense Sp245 AZOBR_RS30120 C4-dicarboxylate ABC transporter permease insig. 29 26
  Azospirillum sp. SherDot2 MPMX19_05803 C4-dicarboxylate TRAP transporter large permease protein DctM insig. 29 26
  Acidovorax sp. GW101-3H11 Ac3H11_163 TRAP-type C4-dicarboxylate transport system, large permease component insig. 28 26
  Agrobacterium fabrum C58 Atu3367 TRAP dicarboxylate transporter subunit DctM insig. 28 28
  Pseudomonas segetis P6 ACVTMO_RS07580 TRAP transporter large permease insig. 31 26
  Xanthobacter sp. DMC5 GFF1344 hypothetical protein strong 31 19