Homologs of hup-4 from Desulfovibrio vulgaris Hildenborough JW710

hup-4: DNA-binding protein HU (TIGR)
SEED: DNA-binding protein HU
KEGG: DNA-binding protein HU-beta

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Desulfovibrio vulgaris Hildenborough JW710 DVU3187 hup-4 DNA-binding protein HU (TIGR) sig. 100 100
o Desulfovibrio vulgaris Miyazaki F DvMF_2029 histone family protein DNA-binding protein (RefSeq) no data 83 99
  Pseudomonas sp. RS175 PFR28_03533 DNA-binding protein HU 1 insig. 48 98
  Pseudomonas putida KT2440 PP_0975 putative DNA-binding protein HU, form N no data 46 98
  Azospirillum brasilense Sp245 AZOBR_RS23140 transcriptional regulator no data 46 99
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1709 DNA-binding protein HU-beta no data 44 98
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_904 DNA-binding protein HU-beta strong 44 98
  Pseudomonas fluorescens FW300-N2E3 AO353_04560 dipicolinate synthase no data 44 98
  Pseudomonas fluorescens FW300-N2C3 AO356_17445 dipicolinate synthase no data 44 98
  Pseudomonas simiae WCS417 PS417_05140 dipicolinate synthase strong 44 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5415 DNA-binding protein HU-beta no data 45 98
  Variovorax sp. OAS795 ABID97_RS23580 HU family DNA-binding protein no data 45 98
  Desulfovibrio vulgaris Miyazaki F DvMF_2799 histone family protein DNA-binding protein (RefSeq) strong 45 98
  Azospirillum brasilense Sp245 AZOBR_RS33080 transcriptional regulator no data 45 98
o Pseudomonas fluorescens SBW25 PFLU_RS05210 HU family DNA-binding protein insig. 45 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05210 HU family DNA-binding protein strong 45 98
  Magnetospirillum magneticum AMB-1 AMB_RS04760 HU family DNA-binding protein no data 44 99
  Magnetospirillum magneticum AMB-1 AMB_RS05070 HU family DNA-binding protein no data 44 99
  Magnetospirillum magneticum AMB-1 AMB_RS10490 HU family DNA-binding protein no data 44 99
  Magnetospirillum magneticum AMB-1 AMB_RS11020 HU family DNA-binding protein insig. 44 99
  Shewanella loihica PV-4 Shew_0430 histone family protein DNA-binding protein (RefSeq) sig. 42 98
  Pseudomonas syringae pv. syringae B728a Psyr_1084 Histone-like bacterial DNA-binding protein no data 42 98
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1084 Histone-like bacterial DNA-binding protein insig. 42 98
  Pseudomonas sp. S08-1 OH686_02500 DNA-binding protein HU, form N insig. 43 98
  Desulfovibrio vulgaris Hildenborough JW710 DVU0764 hup-2 DNA-binding protein HU (TIGR) sig. 43 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS29495 HU family DNA-binding protein strong 45 87
  Ralstonia sp. UNC404CL21Col ABZR87_RS00650 HU family DNA-binding protein no data 43 99
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS05030 HU family DNA-binding protein no data 43 99
  Ralstonia solanacearum GMI1000 RS_RS12640 HU family DNA-binding protein no data 43 99
  Ralstonia solanacearum PSI07 RPSI07_RS12265 HU family DNA-binding protein no data 43 99
  Ralstonia solanacearum UW163 UW163_RS08595 HU family DNA-binding protein no data 43 99
  Azospirillum brasilense Sp245 AZOBR_RS07150 transcriptional regulator no data 45 97
  Burkholderia phytofirmans PsJN BPHYT_RS19580 DNA-binding protein no data 44 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02359 HU family DNA-binding protein no data 44 87
  Paraburkholderia graminis OAS925 ABIE53_000292 DNA-binding protein HU-beta no data 44 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS35320 HU family DNA-binding protein insig. 42 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS41130 HU family DNA-binding protein insig. 41 98
  Pantoea sp. MT58 IAI47_14640 DNA-binding protein HU-beta sig. 49 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS36300 HU family DNA-binding protein insig. 42 98
  Fusobacterium nucleatum SB010 HUW76_07000 HU family DNA-binding protein no data 39 98
  Shewanella amazonensis SB2B Sama_1227 HU family DNA-binding protein (RefSeq) no data 46 78
  Erwinia tracheiphila SCR3 LU632_RS18330 hupB DNA-binding protein HU-beta insig. 49 78
  Shewanella sp. ANA-3 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) no data 47 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS35095 HU family DNA-binding protein insig. 40 98
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06148 DNA-binding protein HU-beta no data 45 79
  Azospirillum sp. SherDot2 MPMX19_01544 DNA-binding protein HU no data 47 78
  Kangiella aquimarina DSM 16071 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein strong 47 78
  Shewanella oneidensis MR-1 SO1797 DNA-binding protein, HU family (NCBI ptt file) no data 46 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS41730 HU family DNA-binding protein no data 45 79
  Rhodospirillum rubrum S1H Rru_A0292 Integration host factor, beta subunit (NCBI) no data 37 99
  Shewanella loihica PV-4 Shew_2505 histone family protein DNA-binding protein (RefSeq) no data 45 78
  Marinobacter adhaerens HP15 HP15_2182 histone-like bacterial DNA-binding protein no data 42 97
  Rhodospirillum rubrum S1H Rru_A1553 Histone-like DNA-binding protein (NCBI) no data 42 98
  Phaeobacter inhibens DSM 17395 PGA1_c34260 DNA-binding protein HU-beta no data 41 99
  Magnetospirillum magneticum AMB-1 AMB_RS10215 HU family DNA-binding protein no data 45 79
  Variovorax sp. SCN45 GFF1732 DNA-binding protein HU-beta no data 42 98
  Herbaspirillum seropedicae SmR1 HSERO_RS01615 DNA-binding protein no data 41 87
  Lysobacter sp. OAE881 ABIE51_RS14140 HU family DNA-binding protein no data 41 98
  Desulfovibrio vulgaris Hildenborough JW710 DVU1134 hupB DNA-binding protein HU, beta subunit (TIGR) insig. 38 97
  Escherichia coli BL21 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit strong 47 78
  Escherichia fergusonii Becca EFB2_03617 DNA-binding protein HU-beta insig. 47 78
  Escherichia coli ECOR27 NOLOHH_01250 hupB DNA-binding protein HU-beta cofit 47 78
  Escherichia coli ECOR38 HEPCGN_06930 hupB DNA-binding protein HU-beta cofit 47 78
  Escherichia coli ECRC101 OKFHMN_08315 hupB DNA-binding protein HU-beta insig. 47 78
  Escherichia coli ECRC101 MCAODC_27540 hupB DNA-binding protein HU-beta insig. 47 78
  Escherichia coli ECRC102 NIAGMN_06370 hupB DNA-binding protein HU-beta insig. 47 78
  Escherichia coli ECRC62 BNILDI_22665 hupB DNA-binding protein HU-beta insig. 47 78
  Escherichia coli ECRC98 JDDGAC_11970 hupB DNA-binding protein HU-beta no data 47 78
  Escherichia coli ECRC99 KEDOAH_19650 hupB DNA-binding protein HU-beta no data 47 78
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03233 DNA-binding protein HU-beta strong 47 78
  Escherichia coli Nissle 1917 ECOLIN_RS02640 nucleoid-associated protein HU-beta insig. 47 78
  Escherichia coli BW25113 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) strong 47 78
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4356 DNA-binding protein HU-beta cofit 47 78
  Phaeobacter inhibens DSM 17395 PGA1_c04840 integration host factor subunit beta no data 33 99
  Alteromonas macleodii MIT1002 MIT1002_02756 hypothetical protein no data 46 78
  Dickeya dadantii 3937 DDA3937_RS05655 DNA-binding protein HU-beta insig. 46 78
  Dickeya dianthicola 67-19 HGI48_RS05700 DNA-binding protein HU-beta insig. 46 78
  Dickeya dianthicola ME23 DZA65_RS06025 DNA-binding protein HU-beta insig. 46 78
  Dinoroseobacter shibae DFL-12 Dshi_1027 integration host factor, beta subunit (RefSeq) no data 33 99
  Cupriavidus basilensis FW507-4G11 RR42_RS28955 transcriptional regulator sig. 55 58
  Enterobacter asburiae PDN3 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein cofit 47 78
  Enterobacter sp. TBS_079 MPMX20_01031 DNA-binding protein HU-beta strong 47 78
  Klebsiella michiganensis M5al BWI76_RS06540 DNA-binding protein HU-beta strong 47 78
  Serratia liquefaciens MT49 IAI46_05025 DNA-binding protein HU-beta insig. 46 78
  Caulobacter crescentus NA1000 CCNA_02416 DNA-binding protein HU strong 45 79
  Caulobacter crescentus NA1000 Δfur CCNA_02416 DNA-binding protein HU cofit 45 79
  Pectobacterium carotovorum WPP14 HER17_RS15835 DNA-binding protein HU-beta insig. 45 78
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11630 HU family DNA-binding protein cofit 40 97
  Phocaeicola dorei CL03T12C01 ABI39_RS06620 HU family DNA-binding protein strong 45 77
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10500 HU family DNA-binding protein strong 45 77
  Magnetospirillum magneticum AMB-1 AMB_RS14030 HU family DNA-binding protein no data 46 78
  Sinorhizobium meliloti 1021 SMc01906 histone-like protein no data 39 98
  Shewanella sp. ANA-3 Shewana3_0547 histone family protein DNA-binding protein (RefSeq) cofit 38 98
  Shewanella oneidensis MR-1 SO0548 DNA-binding protein, HU family (NCBI ptt file) insig. 38 98
  Rahnella sp. WP5 EX31_RS22260 DNA-binding protein HU-beta insig. 45 79
  Desulfovibrio vulgaris Miyazaki F DvMF_0500 histone family protein DNA-binding protein (RefSeq) insig. 45 77
  Ralstonia solanacearum GMI1000 RS_RS16830 HU family DNA-binding protein insig. 37 98
  Marinobacter adhaerens HP15 HP15_1367 integration host factor, beta subunit no data 33 98
  Shewanella amazonensis SB2B Sama_3158 histone-like DNA-binding protein (RefSeq) insig. 38 98
  Bacteroides thetaiotaomicron VPI-5482 BT2830 DNA-binding protein HU-beta (NCBI ptt file) strong 40 88