| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2251 | | DNA-binding protein (TIGR) | sig. | 100 | 100 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_0002 | | transcriptional regulator, XRE family (RefSeq) | insig. | 81 | 98 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS10640 | | XRE family transcriptional regulator | cofit | 42 | 95 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS08770 | | cupin domain-containing protein | sig. | 42 | 95 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS03435 | | cupin domain-containing protein | insig. | 41 | 97 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT3756 | | transcriptional regulator (NCBI ptt file) | sig. | 39 | 95 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_03586 | | cupin domain protein | strong | 40 | 97 |
| o | Methanococcus maripaludis S2 | MMP_RS06555 | | cupin domain-containing protein | sig. | 40 | 95 |
| o | Methanococcus maripaludis JJ | MMJJ_RS07795 | | cupin domain-containing protein | sig. | 40 | 95 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS13885 | | helix-turn-helix transcriptional regulator | insig. | 32 | 95 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS17685 | | helix-turn-helix transcriptional regulator | insig. | 32 | 95 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS01200 | | helix-turn-helix transcriptional regulator | insig. | 30 | 95 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2783 | | transcriptional regulator (NCBI ptt file) | sig. | 29 | 95 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01081 | | hypothetical protein | insig. | 29 | 95 |
| | Methanococcus maripaludis JJ | MMJJ_RS02070 | | XRE family transcriptional regulator | insig. | 28 | 94 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33920 | | XRE family transcriptional regulator | strong | 30 | 90 |
| | Methanococcus maripaludis S2 | MMP_RS03000 | | cupin domain-containing protein | sig. | 29 | 90 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3066 | | DNA-binding protein (TIGR) | sig. | 28 | 91 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3201 | | Transcriptional regulator, MerR family | strong | 28 | 94 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_06745 | | DNA-binding protein | sig. | 28 | 94 |
| o | Agrobacterium fabrum C58 | Atu4226 | | transcriptional regulator | sig. | 27 | 90 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS17570 | | XRE family transcriptional regulator | insig. | 29 | 95 |
| | Variovorax sp. OAS795 | ABID97_RS09230 | | XRE family transcriptional regulator | insig. | 32 | 84 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06955 | | helix-turn-helix domain-containing protein | insig. | 29 | 92 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06955 | | helix-turn-helix domain-containing protein | strong | 29 | 92 |
| | Pseudomonas simiae WCS417 | PS417_06895 | | DNA-binding protein | sig. | 29 | 92 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS11200 | | XRE family transcriptional regulator | sig. | 29 | 84 |
| | Fusobacterium nucleatum SB010 | HUW76_01135 | | cupin domain-containing protein | strong | 28 | 95 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4551 | | Transcriptional regulator, MerR family | insig. | 29 | 94 |
| | Shewanella loihica PV-4 | Shew_0970 | | XRE family transcriptional regulator (RefSeq) | strong | 29 | 88 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1871 | | transcriptional regulator, XRE family (RefSeq) | insig. | 28 | 92 |
| | Variovorax sp. SCN45 | GFF6118 | | Transcriptional regulator, MerR family | insig. | 30 | 84 |
| | Pseudomonas putida KT2440 | PP_3125 | | putative transcriptional regulator (Cro/CI family) | no data | 28 | 92 |
| | Shewanella amazonensis SB2B | Sama_2646 | | XRE family transcriptional regulator (RefSeq) | strong | 29 | 88 |
| | Pseudomonas sp. RS175 | PFR28_00271 | | hypothetical protein | strong | 27 | 85 |
| | Paraburkholderia graminis OAS925 | ABIE53_004133 | | transcriptional regulator with XRE-family HTH domain | insig. | 27 | 87 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03162 | | transcriptional regulator, XRE family with cupin sensor | sig. | 25 | 87 |
| o | Lysobacter sp. OAE881 | ABIE51_RS15090 | | XRE family transcriptional regulator | cofit | 27 | 97 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2356 | | transcriptional regulator, XRE family (RefSeq) | insig. | 26 | 95 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1706 | | transcriptional regulator, XRE family with cupin sensor | insig. | 28 | 92 |
| | Shewanella sp. ANA-3 | Shewana3_3100 | | XRE family transcriptional regulator (RefSeq) | strong | 28 | 88 |
| | Shewanella oneidensis MR-1 | SO1265 | | transcriptional regulator, putative (NCBI ptt file) | strong | 27 | 88 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS09590 | | XRE family transcriptional regulator | insig. | 26 | 87 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS23125 | | XRE family transcriptional regulator | strong | 26 | 96 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS07485 | | XRE family transcriptional regulator | insig. | 27 | 87 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS22055 | | DNA-binding protein | strong | 27 | 90 |
| | Sinorhizobium meliloti 1021 | SMc02620 | | hypothetical protein | sig. | 24 | 95 |
| | Sinorhizobium meliloti 1021 | SMa1076 | | hypothetical protein | insig. | 29 | 100 |
| | Variovorax sp. OAS795 | ABID97_RS13245 | | XRE family transcriptional regulator | insig. | 29 | 95 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS09100 | | XRE family transcriptional regulator | cofit | 29 | 94 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2038 | | transcriptional regulator, XRE family with cupin sensor domain | strong | 29 | 76 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03130 | | transcriptional regulator, XRE family with cupin sensor | insig. | 27 | 87 |
| | Pseudomonas sp. S08-1 | OH686_13700 | | Putrescine utilization regulator | strong | 30 | 88 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS18365 | | cupin domain-containing protein | strong | 26 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS07145 | | DNA-binding protein | insig. | 25 | 94 |
| | Pseudomonas putida KT2440 | PP_2245 | | Transcriptional regulator, Cro/CI family | strong | 29 | 95 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS14960 | | XRE family transcriptional regulator | insig. | 28 | 93 |
| | Ralstonia solanacearum UW163 | UW163_RS12430 | | XRE family transcriptional regulator | no data | 28 | 93 |
| | Sinorhizobium meliloti 1021 | SM_b21187 | | LacI family transcriptional regulator | insig. | 27 | 98 |
| | Pseudomonas stutzeri RCH2 | Psest_3791 | | Predicted transcriptional regulators | insig. | 28 | 88 |
| | Paraburkholderia graminis OAS925 | ABIE53_004168 | | transcriptional regulator with XRE-family HTH domain | strong | 26 | 87 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_30090 | | XRE family transcriptional regulator | strong | 28 | 87 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3219 | | Transcriptional regulator, Cro/CI family | insig. | 29 | 95 |
| o | Azospirillum sp. SherDot2 | MPMX19_05211 | | hypothetical protein | insig. | 27 | 95 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS11400 | | helix-turn-helix domain-containing protein | cofit | 28 | 87 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS11400 | | helix-turn-helix domain-containing protein | strong | 28 | 87 |
| | Variovorax sp. SCN45 | GFF4219 | | Transcriptional regulator, MerR family | no data | 27 | 86 |
| | Ralstonia solanacearum GMI1000 | RS_RS05775 | | XRE family transcriptional regulator | insig. | 27 | 93 |
| | Rhizobium sp. OAE497 | ABIE40_RS00150 | | MerR family transcriptional regulator | insig. | 30 | 94 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2272 | | Helix-turn-helix motif protein | insig. | 26 | 82 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2272 | | Helix-turn-helix motif protein | insig. | 26 | 82 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_15345 | | XRE family transcriptional regulator | cofit | 23 | 95 |
| | Pseudomonas putida KT2440 | PP_2868 | | Transcriptional regulator, Cro/CI family | strong | 29 | 93 |
| | Pseudomonas putida KT2440 | PP_5268 | | DNA-binding transcriptional repressor PuuR-putrescine | strong | 28 | 88 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS18415 | | XRE family transcriptional regulator | insig. | 28 | 93 |
| | Azospirillum brasilense Sp245 | AZOBR_RS19640 | | aldehyde dehydrogenase | strong | 26 | 88 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS24395 | | XRE family transcriptional regulator | strong | 23 | 90 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c14960 | | putative transcriptional regulator | sig. | 27 | 95 |
| | Bosea sp. OAE506 | ABIE41_RS05345 | | cupin domain-containing protein | insig. | 30 | 88 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_09140 | | XRE family transcriptional regulator | strong | 28 | 88 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_12635 | | XRE family transcriptional regulator | strong | 28 | 88 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4394 | | Putrescine utilization regulator | strong | 28 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS27045 | | XRE family transcriptional regulator | insig. | 26 | 84 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS16215 | | XRE family transcriptional regulator | cofit | 26 | 96 |
| | Ralstonia solanacearum UW163 | UW163_RS16950 | | XRE family transcriptional regulator | insig. | 26 | 96 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_24790 | | Cro/Cl family transcriptional regulator | sig. | 28 | 95 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2147 | | Putrescine utilization regulator | strong | 29 | 88 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS29365 | | cupin domain-containing protein | cofit | 29 | 88 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS29365 | | cupin domain-containing protein | strong | 29 | 88 |
| | Pseudomonas simiae WCS417 | PS417_27690 | | XRE family transcriptional regulator | strong | 29 | 88 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0238 | | Helix-turn-helix motif protein | insig. | 28 | 90 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0238 | | Helix-turn-helix motif protein | insig. | 28 | 90 |
| | Pseudomonas sp. RS175 | PFR28_04396 | | HTH-type transcriptional regulator PuuR | strong | 27 | 88 |
| | Ralstonia solanacearum GMI1000 | RS_RS15735 | | XRE family transcriptional regulator | insig. | 27 | 82 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_815 | | Putrescine utilization regulator | strong | 27 | 88 |
| | Rhodospirillum rubrum S1H | Rru_A2614 | | Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) | insig. | 27 | 91 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1659 | | transcriptional regulator, XRE family with cupin sensor | insig. | 27 | 82 |
| | Phaeobacter inhibens DSM 17395 | PGA1_262p00290 | | putative transcriptional regulator | insig. | 34 | 46 |
| | Phaeobacter inhibens DSM 17395 | PGA1_78p00250 | | putative HTH-type transcriptional regulator | insig. | 31 | 58 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c34340 | | putative HTH-type transcriptional regulator | sig. | 28 | 92 |