| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| o | Escherichia coli BL21 | ECD_03440 | | putative DNA-binding transcriptional regulator | insig. | 100 | 100 |
| o | Escherichia coli ECOR27 | NOLOHH_07775 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | insig. | 100 | 100 |
| | Escherichia coli BW25113 | b3585 | yiaU | predicted DNA-binding transcriptional regulator (NCBI) | insig. | 100 | 100 |
| o | Escherichia coli ECRC62 | BNILDI_03755 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | cofit | 100 | 100 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00119 | | hypothetical protein | insig. | 100 | 100 |
| o | Escherichia coli ECRC100 | OKFHMN_15880 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | insig. | 99 | 100 |
| o | Escherichia coli ECRC101 | MCAODC_06395 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | insig. | 99 | 100 |
| o | Escherichia coli ECRC102 | NIAGMN_13640 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | insig. | 99 | 100 |
| o | Escherichia coli ECRC98 | JDDGAC_19510 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | insig. | 99 | 100 |
| o | Escherichia coli ECRC99 | KEDOAH_12270 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | no data | 99 | 100 |
| o | Escherichia coli ECOR38 | HEPCGN_14715 | yiaU | Uncharacterized HTH-type transcriptional regulator YiaU | insig. | 99 | 100 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_3842 | | Transcriptional regulator | insig. | 71 | 98 |
| o | Enterobacter sp. TBS_079 | MPMX20_00143 | | HTH-type transcriptional activator AmpR | cofit | 69 | 98 |
| o | Serratia liquefaciens MT49 | IAI46_19790 | | LysR family transcriptional regulator | insig. | 34 | 94 |
| | Variovorax sp. SCN45 | GFF3618 | | Transcriptional regulator, LysR family | cofit | 27 | 87 |
| | Variovorax sp. OAS795 | ABID97_RS00735 | | LysR family transcriptional regulator | strong | 27 | 87 |
| | Shewanella loihica PV-4 | Shew_3105 | | LysR family transcriptional regulator (RefSeq) | no data | 26 | 88 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 27 | 87 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS16640 | | LysR family transcriptional regulator | cofit | 27 | 83 |
| | Variovorax sp. OAS795 | ABID97_RS21900 | | LysR family transcriptional regulator | insig. | 27 | 89 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS15205 | | LysR family transcriptional regulator | insig. | 25 | 94 |
| | Pantoea sp. MT58 | IAI47_16330 | | LysR family transcriptional regulator | insig. | 26 | 83 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3700 | | Transcriptional regulator | insig. | 27 | 95 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_636 | | Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme | insig. | 28 | 88 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS04415 | | LysR family transcriptional regulator | insig. | 27 | 92 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS25045 | | LysR family transcriptional regulator | insig. | 25 | 90 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF461 | | Transcriptional regulator, LysR family | insig. | 25 | 93 |
| | Shewanella sp. ANA-3 | Shewana3_1915 | | LysR family transcriptional regulator (RefSeq) | insig. | 25 | 93 |
| | Shewanella oneidensis MR-1 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 25 | 89 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS17035 | | LysR family transcriptional regulator | insig. | 25 | 92 |
| | Ralstonia solanacearum UW163 | UW163_RS18425 | | LysR family transcriptional regulator | insig. | 25 | 92 |
| | Shewanella sp. ANA-3 | Shewana3_1836 | | LysR family transcriptional regulator (RefSeq) | insig. | 26 | 87 |
| | Pseudomonas putida KT2440 | PP_2534 | | Transcriptional regulator, LysR family | insig. | 27 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37825 | | LysR substrate-binding domain-containing protein | insig. | 26 | 85 |
| | Ralstonia solanacearum GMI1000 | RS_RS21935 | | LysR family transcriptional regulator | insig. | 26 | 92 |
| | Paraburkholderia graminis OAS925 | ABIE53_005151 | | LysR family transcriptional activator of dmlA | insig. | 26 | 85 |
| | Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 25 | 89 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1182 | | Transcriptional regulator, LysR family | sig. | 25 | 77 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_641 | | Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme | insig. | 27 | 89 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS09780 | | LysR family transcriptional regulator | insig. | 26 | 91 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS09780 | | LysR family transcriptional regulator | insig. | 26 | 91 |
| | Rahnella sp. WP5 | EX31_RS21455 | | LysR family transcriptional regulator | insig. | 26 | 91 |
| | Agrobacterium fabrum C58 | Atu5187 | | LysR family transcriptional regulator | insig. | 28 | 81 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0884 | | Transcriptional regulator | insig. | 26 | 92 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 26 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS01435 | | LysR family transcriptional regulator | strong | 25 | 90 |
| | Variovorax sp. SCN45 | GFF1490 | | Transcriptional regulator, LysR family | insig. | 24 | 90 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS11355 | | LysR family transcriptional regulator | insig. | 24 | 93 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02245 | | transcriptional regulator, LysR family | strong | 25 | 90 |
| | Rhizobium sp. OAE497 | ABIE40_RS03475 | | LysR family transcriptional regulator | insig. | 26 | 80 |
| | Paraburkholderia graminis OAS925 | ABIE53_000382 | | DNA-binding transcriptional LysR family regulator | strong | 25 | 90 |
| | Variovorax sp. OAS795 | ABID97_RS17535 | | LysR family transcriptional regulator | insig. | 24 | 90 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_18590 | | LysR family transcriptional regulator | insig. | 26 | 95 |
| | Dechlorosoma suillum PS | Dsui_1892 | | transcriptional regulator | insig. | 27 | 89 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26885 | | LysR family transcriptional regulator | insig. | 25 | 77 |
| | Pseudomonas sp. SVBP6 | COO64_RS24670 | | LysR family transcriptional regulator | insig. | 29 | 83 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01533 | | transcriptional regulator, LysR family | insig. | 26 | 83 |
| | Shewanella oneidensis MR-1 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 25 | 92 |
| | Pseudomonas protegens RBAN4 | FABNJH_06195 | dmlR | HTH-type transcriptional regulator DmlR | insig. | 25 | 77 |
| | Variovorax sp. SCN45 | GFF6903 | | Transcriptional regulator, LysR family | insig. | 27 | 89 |
| | Pseudomonas sp. DMC3 | GFF943 | | HTH-type transcriptional regulator DmlR | cofit | 26 | 93 |
| | Shewanella loihica PV-4 | Shew_1128 | | LysR family transcriptional regulator (RefSeq) | strong | 26 | 89 |
| | Shewanella sp. ANA-3 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | insig. | 25 | 92 |
| | Pseudomonas sp. S08-1 | OH686_18575 | | Transcriptional regulator, LysR family | insig. | 24 | 91 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3062 | | transcriptional regulator, LysR family | insig. | 23 | 80 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3062 | | transcriptional regulator, LysR family | insig. | 23 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 28 | 81 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 28 | 81 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2938 | | transcriptional regulator, LysR family | insig. | 26 | 92 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2938 | | transcriptional regulator, LysR family | insig. | 26 | 92 |
| | Rhizobium sp. OAE497 | ABIE40_RS16690 | | LysR family transcriptional regulator | insig. | 26 | 87 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 26 | 78 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS13435 | | LysR family transcriptional regulator | insig. | 23 | 86 |
| | Shewanella amazonensis SB2B | Sama_0005 | | LysR, substrate-binding (RefSeq) | insig. | 26 | 81 |
| | Rahnella sp. WP5 | EX31_RS04005 | | LysR family transcriptional regulator | insig. | 23 | 92 |
| | Pseudomonas sp. SVBP6 | COO64_RS26245 | | LysR family transcriptional regulator | insig. | 27 | 85 |
| | Ralstonia solanacearum GMI1000 | RS_RS12710 | | LysR family transcriptional regulator | insig. | 26 | 95 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS00135 | | LysR family transcriptional regulator | cofit | 25 | 90 |
| | Variovorax sp. OAS795 | ABID97_RS05570 | | LysR family transcriptional regulator | insig. | 26 | 89 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_19380 | | LysR family transcriptional regulator | insig. | 26 | 91 |
| | Xanthobacter sp. DMC5 | GFF2907 | | HTH-type transcriptional regulator DmlR | insig. | 26 | 92 |
| | Variovorax sp. SCN45 | GFF7171 | | Transcriptional regulator DmlR, LysR family | insig. | 26 | 89 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01435 | | HTH-type transcriptional regulator DmlR | cofit | 25 | 77 |
| | Shewanella amazonensis SB2B | Sama_0401 | | LysR family transcriptional regulator (RefSeq) | strong | 26 | 80 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS33760 | | hypothetical protein | insig. | 27 | 89 |
| | Pseudomonas sp. RS175 | PFR28_02643 | | HTH-type transcriptional regulator DmlR | insig. | 24 | 91 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29570 | | LysR family transcriptional regulator | insig. | 27 | 92 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_19365 | | LysR family transcriptional regulator | insig. | 24 | 87 |
| | Pseudomonas protegens RBAN4 | FABNJH_24355 | lysR | LysR family transcriptional regulator | insig. | 24 | 90 |
| | Variovorax sp. SCN45 | GFF5107 | | Transcriptional regulator, LysR family | insig. | 27 | 77 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2674 | | Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme | insig. | 25 | 87 |
| | Shewanella loihica PV-4 | Shew_0823 | | LysR family transcriptional regulator (RefSeq) | insig. | 25 | 87 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | insig. | 24 | 91 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18185 | | LysR family transcriptional regulator | insig. | 24 | 92 |
| | Shewanella loihica PV-4 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | insig. | 26 | 81 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1749 | | Cyn operon transcriptional activator | insig. | 25 | 91 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | insig. | 25 | 91 |
| | Serratia liquefaciens MT49 | IAI46_20625 | | LysR family transcriptional regulator | insig. | 24 | 95 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06580 | | DNA-binding transcriptional regulator, LysR family | insig. | 24 | 93 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS11255 | | LysR family transcriptional regulator | insig. | 26 | 78 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS11255 | | LysR family transcriptional regulator | strong | 26 | 78 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 26 | 79 |
| | Pseudomonas sp. DMC3 | GFF1160 | | HTH-type transcriptional regulator DmlR | insig. | 26 | 91 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02449 | | HTH-type transcriptional regulator PgrR | strong | 25 | 85 |
| | Pseudomonas putida KT2440 | PP_2961 | | Transcriptional regulator, LysR family | insig. | 24 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS02200 | | LysR family transcriptional regulator | insig. | 26 | 89 |
| | Sinorhizobium meliloti 1021 | SM_b21291 | | LysR family transcriptional regulator | insig. | 26 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS29425 | | LysR family transcriptional regulator | insig. | 26 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_06917 | | HTH-type transcriptional regulator PgrR | cofit | 25 | 77 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS00625 | | LysR family transcriptional regulator | insig. | 25 | 81 |
| | Pseudomonas segetis P6 | ACVTMO_RS19835 | | LysR family transcriptional regulator | insig. | 24 | 94 |
| | Pantoea sp. MT58 | IAI47_01190 | | LysR family transcriptional regulator | insig. | 26 | 91 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 26 | 77 |
| | Pseudomonas sp. BP01 | JOY50_RS04615 | | LysR family transcriptional regulator | insig. | 26 | 92 |
| | Sphingobium sp. HT1-2 | GFF1839 | | Transcriptional regulator, LysR family | cofit | 26 | 90 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21990 | | LysR family transcriptional regulator | insig. | 25 | 91 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29485 | | LysR family transcriptional regulator | insig. | 25 | 91 |
| | Shewanella amazonensis SB2B | Sama_2485 | | LysR family transcriptional regulator (RefSeq) | strong | 25 | 89 |
| | Pseudomonas simiae WCS417 | PS417_10920 | | LysR family transcriptional regulator | insig. | 26 | 79 |
| | Pseudomonas sp. RS175 | PFR28_04672 | | HTH-type transcriptional regulator DmlR | insig. | 25 | 91 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS15810 | | LysR family transcriptional regulator | insig. | 25 | 90 |
| | Xanthobacter sp. DMC5 | GFF2756 | | HTH-type transcriptional regulator DmlR | insig. | 24 | 91 |
| | Pectobacterium carotovorum WPP14 | HER17_RS06865 | | LysR family transcriptional regulator | insig. | 27 | 76 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS16755 | | LysR family transcriptional regulator | cofit | 26 | 89 |
| | Pantoea sp. MT58 | IAI47_16445 | | LysR family transcriptional regulator | insig. | 26 | 88 |
| | Erwinia tracheiphila SCR3 | LU632_RS23365 | | LysR family transcriptional regulator | insig. | 25 | 86 |
| | Acinetobacter baumannii LAC-4 | RR41_RS17005 | | LysR family transcriptional regulator | insig. | 25 | 90 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5561 | | LysR-family transcriptional regulator clustered with PA0057 | insig. | 23 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS28830 | | LysR family transcriptional regulator | insig. | 28 | 91 |
| | Variovorax sp. SCN45 | GFF477 | | Transcriptional regulator, LysR family | insig. | 25 | 89 |
| | Pseudomonas sp. DMC3 | GFF2076 | | HTH-type transcriptional regulator DmlR | insig. | 23 | 79 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 23 | 77 |
| | Variovorax sp. OAS795 | ABID97_RS28575 | | LysR family transcriptional regulator | no data | 24 | 91 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1107 | | Transcriptional regulator | insig. | 25 | 87 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02296 | | HTH-type transcriptional regulator DmlR | cofit | 24 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4166 | | Transcriptional regulator, LysR family | insig. | 25 | 75 |
| | Sinorhizobium meliloti 1021 | SMc01092 | | transcriptional regulator | insig. | 24 | 82 |
| | Erwinia amylovora T8 | OLJFJH_03255 | | LysR family transcriptional regulator | insig. | 23 | 90 |
| | Pseudomonas segetis P6 | ACVTMO_RS17005 | | LysR substrate-binding domain-containing protein | insig. | 25 | 77 |
| | Paraburkholderia graminis OAS925 | ABIE53_005852 | | DNA-binding transcriptional LysR family regulator | insig. | 24 | 90 |
| | Variovorax sp. SCN45 | GFF5042 | | Transcriptional regulator, LysR family | insig. | 27 | 87 |
| | Pseudomonas sp. BP01 | JOY50_RS05555 | | LysR family transcriptional regulator | insig. | 26 | 82 |
| | Variovorax sp. OAS795 | ABID97_RS29215 | | LysR family transcriptional regulator | insig. | 26 | 89 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_11360 | | LysR family transcriptional regulator | cofit | 25 | 86 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_715 | | Transcriptional regulator, LysR family, in glycolate utilization operon | sig. | 25 | 97 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22295 | | LysR family transcriptional regulator | insig. | 25 | 91 |
| | Agrobacterium fabrum C58 | Atu0664 | | transcriptional regulator, LysR family | strong | 25 | 89 |
| | Pseudomonas simiae WCS417 | PS417_06325 | | LysR family transcriptional regulator | strong | 24 | 77 |
| | Pseudomonas sp. BP01 | JOY50_RS10620 | | LysR family transcriptional regulator | insig. | 24 | 90 |
| | Pseudomonas orientalis W4I3 | QF045_RS09170 | | LysR substrate-binding domain-containing protein | insig. | 23 | 77 |
| | Marinobacter adhaerens HP15 | HP15_936 | | transcriptional regulator, LysR family protein | insig. | 26 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21020 | | LysR family transcriptional regulator | no data | 25 | 77 |
| | Escherichia fergusonii Becca | EFB2_03744 | | HTH-type transcriptional regulator PgrR | insig. | 25 | 89 |
| | Escherichia coli ECOR38 | HEPCGN_07685 | lysR | LysR family transcriptional regulator | insig. | 25 | 89 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS01945 | | LysR family transcriptional regulator | insig. | 25 | 89 |
| | Pseudomonas protegens RBAN4 | FABNJH_12875 | | HTH lysR-type domain-containing protein | insig. | 25 | 81 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16575 | | LysR family transcriptional regulator | insig. | 24 | 77 |
| | Pseudomonas simiae WCS417 | PS417_09485 | | LysR family transcriptional regulator | insig. | 24 | 91 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1896 | | transcriptional regulator, MerR family | cofit | 26 | 81 |
| | Shewanella oneidensis MR-1 | SO3363 | | transcriptional regulator, LysR family (NCBI ptt file) | strong | 25 | 86 |
| | Pseudomonas sp. RS175 | PFR28_02001 | | HTH-type transcriptional regulator DmlR | insig. | 24 | 93 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_17750 | | LysR family transcriptional regulator | insig. | 28 | 80 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS01215 | | LysR family transcriptional regulator | insig. | 26 | 90 |
| | Erwinia amylovora T8 | OLJFJH_01560 | | LysR family transcriptional regulator | insig. | 26 | 76 |
| | Shewanella amazonensis SB2B | Sama_3549 | | LyrR family transcriptional regulator (RefSeq) | insig. | 26 | 90 |
| | Shewanella sp. ANA-3 | Shewana3_1186 | | LysR family transcriptional regulator (RefSeq) | strong | 25 | 86 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS02935 | | LysR family transcriptional regulator | insig. | 25 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 25 | 77 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_23640 | | LysR family transcriptional regulator | insig. | 25 | 78 |
| | Serratia liquefaciens MT49 | IAI46_02960 | | LysR family transcriptional regulator | insig. | 25 | 76 |
| | Agrobacterium fabrum C58 | Atu3197 | | LysR family transcriptional regulator | insig. | 25 | 87 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 25 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 25 | 91 |
| | Pseudomonas sp. RS175 | PFR28_03380 | | HTH-type transcriptional regulator DmlR | insig. | 24 | 85 |
| | Pantoea sp. MT58 | IAI47_19460 | | LysR family transcriptional regulator | insig. | 24 | 87 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2376 | | Transcriptional regulator, LysR family | insig. | 24 | 92 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 26 | 77 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 26 | 77 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS04600 | | LysR family transcriptional regulator | insig. | 25 | 89 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | insig. | 25 | 91 |
| | Pectobacterium carotovorum WPP14 | HER17_RS02735 | | LysR family transcriptional regulator | insig. | 24 | 80 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS11610 | | LysR substrate-binding domain-containing protein | insig. | 28 | 78 |
| | Marinobacter adhaerens HP15 | HP15_2748 | | transcriptional regulator, LysR family protein | insig. | 26 | 89 |
| | Pseudomonas sp. RS175 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | strong | 24 | 77 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_25745 | | LysR family transcriptional regulator | insig. | 24 | 81 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05200 | | transcriptional regulator, LysR family | insig. | 22 | 93 |
| | Pseudomonas sp. DMC3 | GFF1237 | | HTH-type transcriptional regulator PgrR | cofit | 26 | 80 |
| | Pseudomonas sp. BP01 | JOY50_RS23715 | | LysR substrate-binding domain-containing protein | insig. | 25 | 79 |
| | Agrobacterium fabrum C58 | Atu3951 | | LysR family transcriptional regulator | insig. | 24 | 89 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_10765 | | LysR family transcriptional regulator | insig. | 23 | 90 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS10455 | | LysR family transcriptional regulator | insig. | 23 | 92 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_01357 | gfnR | glutathione-dependent formaldehyde neutralization regulator | insig. | 22 | 80 |
| | Serratia liquefaciens MT49 | IAI46_02140 | | LysR family transcriptional regulator | insig. | 26 | 83 |
| | Pantoea sp. MT58 | IAI47_17520 | | LysR family transcriptional regulator | insig. | 25 | 88 |
| | Enterobacter sp. TBS_079 | MPMX20_00697 | | HTH-type transcriptional regulator PgrR | insig. | 25 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2357 | | transcriptional regulator, LysR family | insig. | 24 | 81 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2357 | | transcriptional regulator, LysR family | insig. | 24 | 81 |
| | Pseudomonas stutzeri RCH2 | Psest_2817 | | Transcriptional regulator | insig. | 22 | 91 |
| | Acinetobacter radioresistens SK82 | MPMX26_01056 | | HTH-type transcriptional regulator DmlR | cofit | 27 | 91 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS12490 | | LysR family transcriptional regulator | insig. | 26 | 90 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS17710 | | LysR family transcriptional regulator | cofit | 26 | 88 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2979 | | Transcriptional regulator, LysR family | insig. | 24 | 81 |
| | Dickeya dianthicola 67-19 | HGI48_RS09645 | | LysR family transcriptional regulator | insig. | 24 | 89 |
| | Pectobacterium carotovorum WPP14 | HER17_RS04830 | | LysR family transcriptional regulator | insig. | 24 | 81 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 24 | 77 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05925 | | LysR family transcriptional regulator | strong | 24 | 77 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1172.1 | | Transcriptional regulator | insig. | 23 | 89 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01123 | | transcriptional regulator, LysR family | insig. | 26 | 77 |
| | Dickeya dianthicola 67-19 | HGI48_RS01275 | | LysR family transcriptional regulator | insig. | 25 | 85 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19415 | | LysR family transcriptional regulator | insig. | 25 | 98 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS12145 | | LysR family transcriptional regulator | insig. | 22 | 91 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16705 | | LysR family transcriptional regulator | cofit | 27 | 89 |
| | Pseudomonas putida KT2440 | PP_1615 | | Transcriptional regulator, LysR family | strong | 25 | 79 |
| | Pseudomonas aeruginosa MRSN321 | PFGADD_01338 | gfnR | glutathione-dependent formaldehyde neutralization regulator | insig. | 22 | 80 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15990 | | LysR family transcriptional regulator | no data | 27 | 89 |
| | Ralstonia solanacearum GMI1000 | RS_RS01015 | | LysR family transcriptional regulator | insig. | 26 | 79 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03714 | | transcriptional regulator, LysR family | insig. | 24 | 91 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_700 | | LysR-family transcriptional regulator clustered with PA0057 | insig. | 24 | 85 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS22530 | | LysR family transcriptional regulator | insig. | 24 | 83 |
| | Ralstonia solanacearum UW163 | UW163_RS23075 | | LysR family transcriptional regulator | insig. | 24 | 83 |
| | Pseudomonas protegens RBAN4 | FABNJH_26275 | ycaN | HTH-type transcriptional regulator YcaN | insig. | 22 | 81 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 22 | 80 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS33705 | | LysR family transcriptional regulator | insig. | 27 | 79 |
| | Dickeya dianthicola 67-19 | HGI48_RS04610 | | LysR family transcriptional regulator | insig. | 25 | 94 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS22070 | | LysR family transcriptional regulator | cofit | 24 | 81 |
| | Rhizobium sp. OAE497 | ABIE40_RS03550 | | LysR family transcriptional regulator | strong | 24 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS11310 | | LysR family transcriptional regulator | no data | 23 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS37975 | | LysR family transcriptional regulator | insig. | 27 | 85 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_30465 | | LysR family transcriptional regulator | insig. | 26 | 77 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1954 | | Transcriptional regulator, LysR family | insig. | 26 | 77 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS15095 | | LysR family transcriptional regulator | insig. | 26 | 89 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_03885 | | LysR family transcriptional regulator | insig. | 25 | 85 |
| | Dickeya dadantii 3937 | DDA3937_RS04650 | | LysR family transcriptional regulator | insig. | 25 | 95 |
| | Serratia liquefaciens MT49 | IAI46_20610 | | LysR family transcriptional regulator | insig. | 25 | 90 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11360 | | LysR family transcriptional regulator | no data | 25 | 77 |
| | Escherichia coli ECRC99 | KEDOAH_18800 | lysR | LysR family transcriptional regulator | no data | 24 | 89 |
| | Dickeya dianthicola ME23 | DZA65_RS09955 | | LysR family transcriptional regulator | insig. | 24 | 89 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_02135 | dmlR | HTH-type transcriptional regulator DmlR | insig. | 24 | 92 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS20495 | | LysR family transcriptional regulator | insig. | 23 | 92 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS08855 | | LysR family transcriptional regulator | insig. | 23 | 91 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12790 | | LysR family transcriptional regulator | insig. | 26 | 90 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4923 | | transcriptional regulator, LysR family | insig. | 28 | 76 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4923 | | transcriptional regulator, LysR family | insig. | 28 | 76 |
| | Dickeya dianthicola ME23 | DZA65_RS04530 | | LysR family transcriptional regulator | insig. | 25 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS13235 | | LysR family transcriptional regulator | cofit | 25 | 78 |
| | Pseudomonas aeruginosa MRSN321 | PFGADD_02783 | dmlR | HTH-type transcriptional regulator DmlR | sig. | 25 | 77 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_02814 | dmlR | HTH-type transcriptional regulator DmlR | insig. | 25 | 77 |
| | Escherichia coli ECRC101 | MCAODC_28375 | lysR | LysR family transcriptional regulator | insig. | 24 | 89 |
| | Escherichia coli ECRC98 | JDDGAC_12800 | lysR | LysR family transcriptional regulator | insig. | 24 | 89 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS06260 | | LysR family transcriptional regulator | insig. | 24 | 90 |