Conservation of cofitness between Xcc-8004.4214.1 and Xcc-8004.2167.1 in Xanthomonas campestris pv. campestris strain 8004

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4214.1 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) 1.0 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.54 11
Lysobacter sp. OAE881 0.65 ABIE51_RS05520 nitroreductase 0.77 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_10710 Putative NAD(P)H nitroreductase 0.62 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Rhodanobacter denitrificans MT42 0.51 LRK55_RS03610 nitroreductase 0.63 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS03860 nitroreductase 0.61 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS22155 nitroreductase 0.60 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Agrobacterium fabrum C58 0.41 Atu1744 nitroreductase family protein 0.37 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase low > 89
Rhizobium sp. OAE497 0.39 ABIE40_RS09685 nitroreductase 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 107
Bosea sp. OAE506 0.39 ABIE41_RS14115 nitroreductase 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Rhodopseudomonas palustris CGA009 0.38 TX73_017620 nitroreductase 0.38 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_03990 nitroreductase 0.49 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 104
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_2633 Nitroreductase family protein 0.49 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 103
Pseudomonas stutzeri RCH2 0.37 Psest_1881 Nitroreductase 0.55 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Pseudomonas sp. RS175 0.37 PFR28_00799 Putative NAD(P)H nitroreductase YdjA 0.49 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Sinorhizobium meliloti 1021 0.35 SMc01012 hypothetical protein 0.41 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase low > 103
Pseudomonas sp. S08-1 0.34 OH686_20760 Putative NAD(P)H nitroreductase YdjA 0.55 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_4412 Nitroreductase family protein 0.52 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Dinoroseobacter shibae DFL-12 0.33 Dshi_2627 nitroreductase (RefSeq) 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) low > 64
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3544 Nitroreductase family protein 0.52 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas simiae WCS417 0.33 PS417_22730 nitroreductase 0.50 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_3592 Nitroreductase 0.51 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_3592 Nitroreductase 0.51 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS24370 NAD(P)H nitroreductase 0.50 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS24370 NAD(P)H nitroreductase 0.50 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_02736 nitroreductase family 0.40 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Caulobacter crescentus NA1000 0.32 CCNA_02736 nitroreductase family 0.40 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 66
Pseudomonas putida KT2440 0.32 PP_4506 Nitroreductase family protein 0.53 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 96
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS35735 nitroreductase 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 109
Variovorax sp. SCN45 0.32 GFF205 Nitroreductase family protein 0.48 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) low > 127
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS08265 nitroreductase 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Enterobacter asburiae PDN3 0.30 EX28DRAFT_1766 Nitroreductase 0.49 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Phaeobacter inhibens DSM 17395 0.30 PGA1_c24460 putative nitroreductase 0.37 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA low > 62
Paraburkholderia graminis OAS925 0.30 ABIE53_001681 nitroreductase 0.49 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_04933 Nitroreductase 0.49 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Shewanella loihica PV-4 0.29 Shew_1740 nitroreductase (RefSeq) 0.55 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_18485 nitroreductase 0.51 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 101
Escherichia coli ECRC102 0.29 NIAGMN_01245 ydjA NAD(P)H nitroreductase 0.49 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BW25113 0.29 b1765 ydjA predicted oxidoreductase (NCBI) 0.49 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Escherichia coli ECOR38 0.29 HEPCGN_05190 ydjA NAD(P)H nitroreductase 0.49 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Escherichia coli ECRC100 0.29 OKFHMN_26820 ydjA NAD(P)H nitroreductase 0.49 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Escherichia coli ECRC99 0.29 KEDOAH_01290 ydjA NAD(P)H nitroreductase 0.49 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BL21 0.29 ECD_01734 putative oxidoreductase 0.49 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01967 Putative NAD(P)H nitroreductase YdjA 0.49 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia coli ECRC101 0.29 MCAODC_18590 ydjA NAD(P)H nitroreductase 0.49 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Escherichia coli ECRC98 0.29 JDDGAC_01395 ydjA NAD(P)H nitroreductase 0.49 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Escherichia coli ECOR27 0.29 NOLOHH_17330 ydjA NAD(P)H nitroreductase 0.49 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli ECRC62 0.29 BNILDI_16115 ydjA NAD(P)H nitroreductase 0.49 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia fergusonii Becca 0.29 EFB2_02229 Putative NAD(P)H nitroreductase YdjA 0.49 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS09845 NAD(P)H nitroreductase 0.49 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Shewanella oneidensis MR-1 0.28 SO2708 nitroreductase family protein (NCBI ptt file) 0.54 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.28 Shewana3_2494 nitroreductase (RefSeq) 0.54 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1311 Nitroreductase 0.36 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 68
Marinobacter adhaerens HP15 0.27 HP15_1466 nitroreductase family protein 0.55 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Enterobacter sp. TBS_079 0.27 MPMX20_01851 Putative NAD(P)H nitroreductase YdjA 0.49 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3484 FIG002003: Protein YdjA 0.50 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Shewanella amazonensis SB2B 0.26 Sama_1457 nitroreductase family protein (RefSeq) 0.54 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.26 LU632_RS12965 NAD(P)H nitroreductase 0.47 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Azospirillum brasilense Sp245 0.26 AZOBR_RS29250 oxidoreductase 0.44 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase — —
Pantoea sp. MT58 0.26 IAI47_08975 NAD(P)H nitroreductase 0.48 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF5438 Nitroreductase family protein 0.46 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 90
Klebsiella michiganensis M5al 0.26 BWI76_RS11590 NAD(P)H nitroreductase 0.50 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Serratia liquefaciens MT49 0.25 IAI46_14320 NAD(P)H nitroreductase 0.48 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Rahnella sp. WP5 0.25 EX31_RS06310 NAD(P)H nitroreductase 0.47 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_05335 NAD(P)H nitroreductase 0.50 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Dickeya dadantii 3937 0.25 DDA3937_RS10295 NAD(P)H nitroreductase 0.50 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Dickeya dianthicola 67-19 0.24 HGI48_RS10305 NAD(P)H nitroreductase 0.49 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Dickeya dianthicola ME23 0.24 DZA65_RS10780 NAD(P)H nitroreductase 0.49 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Alteromonas macleodii MIT1002 0.24 MIT1002_01842 Putative NAD(P)H nitroreductase YdjA 0.50 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 70
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_1412 Nitroreductase 0.52 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 40
Pectobacterium carotovorum WPP14 0.23 HER17_RS11100 NAD(P)H nitroreductase 0.48 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Castellaniella sp019104865 MT123 0.22 ABCV34_RS04210 nitroreductase 0.49 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Acidovorax sp. GW101-3H11 0.21 Ac3H11_4500 nitroreductase 0.46 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) — —
Acinetobacter radioresistens SK82 0.21 MPMX26_01115 Putative NAD(P)H nitroreductase YdjA 0.48 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1235 Nitroreductase 0.33 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_09355 nitroreductase 0.36 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pedobacter sp. GW460-11-11-14-LB5 0.15 CA265_RS12860 nitroreductase 0.33 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —

Not shown: 0 genomes with orthologs for Xcc-8004.4214.1 only; 24 genomes with orthologs for Xcc-8004.2167.1 only