Conservation of cofitness between TX73_018705 and TX73_002255 in Rhodopseudomonas palustris CGA009

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_018705 energy-dependent translational throttle protein EttA 1.0 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.54 14
Bosea sp. OAE506 0.82 ABIE41_RS12400 energy-dependent translational throttle protein EttA 0.51 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB low > 77
Sinorhizobium meliloti 1021 0.77 SMc04454 ABC transporter ATP-binding protein 0.47 SMc00321 tRNA pseudouridine synthase B low > 103
Agrobacterium fabrum C58 0.74 Atu2125 ABC transporter, nucleotide binding/ATPase protein 0.46 Atu0085 tRNA pseudouridine 55 synthase 0.31 20
Dinoroseobacter shibae DFL-12 0.74 Dshi_2197 ABC transporter related (RefSeq) 0.36 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) 0.41 15
Rhizobium sp. OAE497 0.74 ABIE40_RS11960 energy-dependent translational throttle protein EttA 0.46 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB low > 107
Phaeobacter inhibens DSM 17395 0.70 PGA1_c26300 ABC transporter, ATP-binding protein 0.36 PGA1_c32950 tRNA pseudouridine synthase B low > 62
Azospirillum sp. SherDot2 0.70 MPMX19_00626 Energy-dependent translational throttle protein EttA 0.41 MPMX19_02524 tRNA pseudouridine synthase B 0.73 14
Rhodospirillum rubrum S1H 0.69 Rru_A1527 ABC transporter component (NCBI) 0.38 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.61 43
Caulobacter crescentus NA1000 Δfur 0.68 CCNA_02231 ABC transporter ATP-binding protein 0.41 CCNA_00035 tRNA pseudouridine synthase B — —
Caulobacter crescentus NA1000 0.68 CCNA_02231 ABC transporter ATP-binding protein 0.41 CCNA_00035 tRNA pseudouridine synthase B — —
Magnetospirillum magneticum AMB-1 0.67 AMB_RS04455 energy-dependent translational throttle protein EttA 0.38 AMB_RS20810 tRNA pseudouridine(55) synthase TruB low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.67 A4249_RS07905 energy-dependent translational throttle protein EttA 0.36 A4249_RS13345 tRNA pseudouridine(55) synthase TruB — —
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_0048 ATP-binding cassette protein, ChvD family 0.31 Ga0059261_2142 tRNA pseudouridine(55) synthase — —
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS02310 energy-dependent translational throttle protein EttA 0.24 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.49 25
Ralstonia solanacearum UW163 0.60 UW163_RS06985 energy-dependent translational throttle protein EttA 0.23 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS06640 energy-dependent translational throttle protein EttA 0.24 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS04630 energy-dependent translational throttle protein EttA 0.27 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB low > 59
Ralstonia solanacearum GMI1000 0.59 RS_RS14590 energy-dependent translational throttle protein EttA 0.24 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Pseudomonas sp. S08-1 0.59 OH686_16240 Energy-dependent translational throttle protein EttA 0.26 OH686_17155 tRNA pseudouridine(55) synthase 0.69 56
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS10725 energy-dependent translational throttle protein EttA 0.21 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS10585 energy-dependent translational throttle protein EttA 0.24 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Rhodanobacter denitrificans MT42 0.59 LRK55_RS04405 energy-dependent translational throttle protein EttA 0.27 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3531 ABC transporter 0.25 GFF4345 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.49 87
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_11445 ettA energy-dependent translational throttle protein EttA 0.27 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 52
Dickeya dadantii 3937 0.58 DDA3937_RS18460 energy-dependent translational throttle protein EttA 0.27 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.87 1
Pseudomonas putida KT2440 0.58 PP_0674 ADP/ATP ratio sensor and inhibitor of translation 0.27 PP_4710 tRNA pseudouridine 55 synthase 0.55 1
Dickeya dianthicola ME23 0.58 DZA65_RS19530 energy-dependent translational throttle protein EttA 0.26 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.64 59
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS18575 ABC transporter ATP-binding protein 0.27 RR42_RS12835 tRNA pseudouridine synthase B low > 128
Dickeya dianthicola 67-19 0.58 HGI48_RS18390 energy-dependent translational throttle protein EttA 0.26 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.51 45
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS23550 ABC transporter ATP-binding protein 0.24 HSERO_RS17985 tRNA pseudouridine synthase B low > 78
Paraburkholderia graminis OAS925 0.58 ABIE53_003656 sulfate-transporting ATPase 0.24 ABIE53_001832 tRNA pseudouridine55 synthase 0.19 96
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS17480 ABC transporter ATP-binding protein 0.24 BPHYT_RS08080 tRNA pseudouridine synthase B 0.28 42
Escherichia coli ECRC101 0.58 MCAODC_01690 ettA energy-dependent translational throttle protein EttA 0.28 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.63 80
Escherichia coli ECRC62 0.58 BNILDI_08090 ettA energy-dependent translational throttle protein EttA 0.28 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli Nissle 1917 0.58 ECOLIN_RS25205 energy-dependent translational throttle protein EttA 0.28 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.80 3
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS27625 energy-dependent translational throttle protein EttA 0.23 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB low > 153
Escherichia coli ECRC99 0.58 KEDOAH_16980 ettA energy-dependent translational throttle protein EttA 0.28 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC102 0.58 NIAGMN_09025 ettA energy-dependent translational throttle protein EttA 0.28 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC100 0.58 OKFHMN_11175 ettA energy-dependent translational throttle protein EttA 0.28 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.74 55
Escherichia coli BW25113 0.58 b4391 yjjK fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) 0.28 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.50 2
Pantoea sp. MT58 0.58 IAI47_16325 energy-dependent translational throttle protein EttA 0.28 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Pseudomonas stutzeri RCH2 0.58 Psest_3433 ATP-binding cassette protein, ChvD family 0.28 Psest_0983 tRNA pseudouridine 55 synthase — —
Escherichia coli BL21 0.58 ECD_04267 energy-dependent translational throttle A 0.28 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.84 1
Pseudomonas sp. RS175 0.58 PFR28_03784 Energy-dependent translational throttle protein EttA 0.27 PFR28_00092 tRNA pseudouridine synthase B — —
Escherichia coli ECRC98 0.58 JDDGAC_14770 ettA energy-dependent translational throttle protein EttA 0.28 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.93 30
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_03670 Energy-dependent translational throttle protein EttA 0.28 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_05699 sulfate-transporting ATPase 0.23 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF1059 ABC transporter, ATP-binding protein 0.28 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.91 15
Enterobacter sp. TBS_079 0.58 MPMX20_00698 Energy-dependent translational throttle protein EttA 0.28 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_15735 ABC transporter ATP-binding protein 0.26 AO356_07400 pseudouridine synthase 0.47 4
Escherichia fergusonii Becca 0.58 EFB2_04053 Energy-dependent translational throttle protein EttA 0.28 EFB2_00657 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_4264 ABC transporter 0.27 Psyr_4178 tRNA pseudouridine synthase B low > 86
Escherichia coli ECOR38 0.58 HEPCGN_09180 ettA energy-dependent translational throttle protein EttA 0.28 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.90 10
Enterobacter asburiae PDN3 0.58 EX28DRAFT_3601 ATP-binding cassette protein, ChvD family 0.28 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_4264 ABC transporter 0.27 Psyr_4178 tRNA pseudouridine synthase B 0.52 10
Escherichia coli ECOR27 0.58 NOLOHH_03505 ettA energy-dependent translational throttle protein EttA 0.28 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.81 18
Klebsiella michiganensis M5al 0.58 BWI76_RS04175 energy-dependent translational throttle protein EttA 0.28 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Dechlorosoma suillum PS 0.58 Dsui_2746 ATP-binding cassette protein, ChvD family 0.26 Dsui_2720 tRNA pseudouridine 55 synthase low > 51
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_5084 Glutathione-regulated potassium-efflux system ATP-binding protein 0.27 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pectobacterium carotovorum WPP14 0.57 HER17_RS02745 energy-dependent translational throttle protein EttA 0.28 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Acidovorax sp. GW101-3H11 0.57 Ac3H11_387 ABC transporter ATP-binding protein 0.20 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Erwinia tracheiphila SCR3 0.57 LU632_RS02565 ettA energy-dependent translational throttle protein EttA 0.27 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB low > 74
Variovorax sp. SCN45 0.57 GFF6780 Energy-dependent translational throttle protein EttA 0.24 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 127
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_1453 Glutathione-regulated potassium-efflux system ATP-binding protein 0.27 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.39 36
Lysobacter sp. OAE881 0.57 ABIE51_RS04610 energy-dependent translational throttle protein EttA 0.25 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB — —
Pseudomonas simiae WCS417 0.57 PS417_24265 ABC transporter ATP-binding protein 0.26 PS417_23960 pseudouridine synthase — —
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_03650 energy-dependent translational throttle protein EttA 0.29 CSW01_03400 tRNA pseudouridine(55) synthase TruB low > 62
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS26180 energy-dependent translational throttle protein EttA 0.26 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.30 51
Pseudomonas fluorescens SBW25 0.57 PFLU_RS26180 energy-dependent translational throttle protein EttA 0.26 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Rahnella sp. WP5 0.57 EX31_RS04000 energy-dependent translational throttle protein EttA 0.25 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_14030 ABC transporter ATP-binding protein 0.27 AO353_05550 pseudouridine synthase 0.34 60
Acinetobacter radioresistens SK82 0.56 MPMX26_02832 Energy-dependent translational throttle protein EttA 0.25 MPMX26_02778 tRNA pseudouridine synthase B 0.67 21
Shewanella sp. ANA-3 0.56 Shewana3_1093 putative ABC transporter ATP-binding protein (RefSeq) 0.26 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.4400.1 ABC transporter, ATP-binding protein 0.26 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_1381 ATPase 0.22 Synpcc7942_1222 truB tRNA pseudouridine synthase B low > 38

Not shown: 23 genomes with orthologs for TX73_018705 only; 2 genomes with orthologs for TX73_002255 only