| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS10885 | | DNAase | 1.0 | RR42_RS01920 | | protoheme IX farnesyltransferase | 0.39 | 11 |
| Ralstonia solanacearum GMI1000 | 0.77 | RS_RS09020 | | TatD family deoxyribonuclease | 0.82 | RS_RS01830 | | protoheme IX farnesyltransferase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.76 | UW163_RS14320 | | TatD family deoxyribonuclease | 0.81 | UW163_RS02590 | | protoheme IX farnesyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.76 | RALBFv3_RS01010 | | TatD family deoxyribonuclease | 0.81 | RALBFv3_RS10990 | | protoheme IX farnesyltransferase | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.76 | RPSI07_RS16465 | | TatD family deoxyribonuclease | 0.83 | RPSI07_RS22315 | | protoheme IX farnesyltransferase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.76 | ABZR87_RS12460 | | TatD family hydrolase | 0.82 | ABZR87_RS06845 | | heme o synthase | 0.42 | 51 |
| Herbaspirillum seropedicae SmR1 | 0.70 | HSERO_RS12995 | | DNAase | 0.64 | HSERO_RS20745 | | protoheme IX farnesyltransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.69 | H281DRAFT_00931 | | TatD DNase family protein | 0.73 | H281DRAFT_01985 | | protoheme IX farnesyltransferase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS09640 | | DNAase | 0.72 | BPHYT_RS02690 | | protoheme IX farnesyltransferase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.69 | QEN71_RS21805 | | TatD family hydrolase | 0.73 | QEN71_RS01545 | | heme o synthase | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.69 | ABIE53_002166 | | TatD DNase family protein | 0.70 | ABIE53_000683 | | protoheme IX farnesyltransferase | low | > 113 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.62 | GFF4665 | | Putative deoxyribonuclease YcfH | 0.58 | GFF698 | | Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.61 | ABCV34_RS03960 | | TatD family hydrolase | 0.57 | ABCV34_RS13230 | | heme o synthase | low | > 48 |
| Variovorax sp. SCN45 | 0.60 | GFF34 | | Uncharacterized metal-dependent hydrolase YcfH | 0.59 | GFF2307 | | Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_2488 | | Putative deoxyribonuclease YcfH | 0.60 | Ac3H11_3883 | | Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | — | — |
| Variovorax sp. OAS795 | 0.58 | ABID97_RS16000 | | TatD family hydrolase | 0.59 | ABID97_RS23915 | | heme o synthase | low | > 91 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1745 | | hydrolase, TatD family | 0.42 | B158DRAFT_0671 | | protoheme IX farnesyltransferase | low | > 40 |
| Shewanella amazonensis SB2B | 0.48 | Sama_2040 | | TatD family hydrolase (RefSeq) | 0.38 | Sama_3491 | | protoheme IX farnesyltransferase (RefSeq) | low | > 62 |
| Pseudomonas putida KT2440 | 0.48 | PP_1967 | | tRNA D-aminoacylase | 0.42 | PP_0110 | | CyoE like protoheme IX farnesyltransferase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_22180 | | Uncharacterized metal-dependent hydrolase YcfH | 0.46 | OH686_12285 | | protoheme IX farnesyltransferase | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.48 | PfGW456L13_2112 | | Putative deoxyribonuclease YcfH | 0.47 | PfGW456L13_606 | | Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.48 | AO353_01325 | | hydrolase TatD | 0.46 | AO353_10870 | | protoheme IX farnesyltransferase | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_1696 | | hydrolase, TatD family | 0.47 | Psest_4334 | | protoheme IX farnesyltransferase | low | > 67 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS23020 | | TatD family hydrolase | 0.44 | PFLU_RS00330 | | protoheme IX farnesyltransferase | 0.47 | 42 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS23020 | | TatD family hydrolase | 0.44 | PFLU_RS00330 | | protoheme IX farnesyltransferase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_21405 | | hydrolase TatD | 0.42 | PS417_00340 | | protoheme IX farnesyltransferase | low | > 88 |
| Azospirillum brasilense Sp245 | 0.47 | AZOBR_RS08795 | | LuxR family transcriptional regulator | 0.27 | AZOBR_RS10580 | | protoheme IX farnesyltransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01469 | | putative metal-dependent hydrolase YcfH | 0.29 | MPMX19_00886 | | Protoheme IX farnesyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_20205 | | hydrolase TatD | 0.47 | AO356_11200 | | protoheme IX farnesyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_5960 | | Putative deoxyribonuclease YcfH | 0.47 | Pf6N2E2_4106 | | Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_1655 | | TatD-related deoxyribonuclease | 0.23 | Psyr_1145 | | Protoheme IX farnesyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_1655 | | TatD-related deoxyribonuclease | 0.23 | Psyr_1145 | | Protoheme IX farnesyltransferase | — | — |
| Pseudomonas sp. RS175 | 0.46 | PFR28_03002 | | putative metal-dependent hydrolase YcfH | 0.47 | PFR28_04683 | | Protoheme IX farnesyltransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_420 | | Putative deoxyribonuclease YcfH | 0.47 | Pf1N1B4_1862 | | Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone | low | > 87 |
| Rahnella sp. WP5 | 0.46 | EX31_RS24470 | | metal-dependent hydrolase | 0.26 | EX31_RS22200 | | protoheme IX farnesyltransferase | low | > 89 |
| Dickeya dadantii 3937 | 0.45 | DDA3937_RS13085 | | metal-dependent hydrolase | 0.25 | DDA3937_RS05595 | | protoheme IX farnesyltransferase | low | > 74 |
| Shewanella loihica PV-4 | 0.44 | Shew_1582 | | TatD family hydrolase (RefSeq) | 0.41 | Shew_0117 | | protoheme IX farnesyltransferase (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.44 | SO2610 | | hydrolase, TatD family (NCBI ptt file) | 0.43 | SO4614 | ctaB | protoheme IX farnesyltransferase (NCBI ptt file) | low | > 76 |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS13620 | | metal-dependent hydrolase | 0.25 | DZA65_RS05965 | | protoheme IX farnesyltransferase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS13150 | | metal-dependent hydrolase | 0.25 | HGI48_RS05640 | | protoheme IX farnesyltransferase | low | > 71 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_09825 | | metal-dependent hydrolase | 0.24 | IAI46_04965 | | protoheme IX farnesyltransferase | low | > 86 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_1769 | | TatD family hydrolase (RefSeq) | 0.43 | Shewana3_3998 | | protoheme IX farnesyltransferase (RefSeq) | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.43 | Ga0059261_0126 | | hydrolase, TatD family | 0.26 | Ga0059261_2005 | | protoheme IX farnesyltransferase | low | > 68 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS11125 | | metal-dependent hydrolase | 0.23 | BWI76_RS06475 | | protoheme IX farnesyltransferase | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS08685 | | metal-dependent hydrolase | 0.25 | HER17_RS15895 | | heme o synthase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.43 | LU632_RS14785 | | metal-dependent hydrolase | 0.25 | LU632_RS18395 | cyoE | heme o synthase | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_12035 | | metal-dependent hydrolase | 0.23 | IAI47_14700 | | protoheme IX farnesyltransferase | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_01740 | | putative deoxyribonuclease YcfH | 0.43 | MIT1002_04027 | | Protoheme IX farnesyltransferase | low | > 70 |
| Escherichia coli BW25113 | 0.42 | b1100 | ycfH | predicted metallodependent hydrolase (NCBI) | 0.23 | b0428 | cyoE | protoheme IX farnesyltransferase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS06350 | | metal-dependent hydrolase | 0.23 | ECOLIN_RS02575 | | heme o synthase | low | > 55 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_21070 | ycfH | metal-dependent hydrolase | 0.23 | NOLOHH_01315 | cyoE | heme o synthase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_02566 | | putative metal-dependent hydrolase YcfH | 0.23 | OHPLBJKB_03245 | | Protoheme IX farnesyltransferase | low | > 73 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_07200 | ycfH | metal-dependent hydrolase | 0.23 | JDDGAC_12035 | cyoE | heme o synthase | low | > 86 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_03540 | ycfH | metal-dependent hydrolase | 0.23 | OKFHMN_08380 | cyoE | heme o synthase | low | > 80 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_23940 | ycfH | metal-dependent hydrolase | 0.23 | HEPCGN_06995 | cyoE | heme o synthase | low | > 87 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_24215 | ycfH | metal-dependent hydrolase | 0.23 | KEDOAH_19585 | cyoE | heme o synthase | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_24290 | ycfH | metal-dependent hydrolase | 0.23 | NIAGMN_06435 | cyoE | heme o synthase | — | — |
| Escherichia coli ECRC101 | 0.42 | MCAODC_22900 | ycfH | metal-dependent hydrolase | 0.23 | MCAODC_27605 | cyoE | heme o synthase | low | > 87 |
| Escherichia coli BL21 | 0.42 | ECD_01096 | | putative DNase | 0.23 | ECD_00379 | | protoheme IX farnesyltransferase | low | > 61 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_19230 | ycfH | metal-dependent hydrolase | 0.23 | BNILDI_22730 | cyoE | heme o synthase | low | > 75 |
| Escherichia fergusonii Becca | 0.42 | EFB2_02875 | | putative metal-dependent hydrolase YcfH | 0.23 | EFB2_03629 | | Protoheme IX farnesyltransferase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF3382 | | Putative deoxyribonuclease YcfH | 0.23 | GFF4342 | | Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | low | > 78 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_01780 | | putative metal-dependent hydrolase YcfH | 0.23 | MPMX20_01019 | | Protoheme IX farnesyltransferase | low | > 85 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_014390 | | TatD family hydrolase | 0.31 | TX73_004295 | | heme o synthase | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.41 | AMB_RS12295 | | TatD family deoxyribonuclease | 0.19 | AMB_RS03800 | | protoheme IX farnesyltransferase 1 | low | > 64 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_1829 | | hydrolase, TatD family | 0.22 | EX28DRAFT_2543 | | protoheme IX farnesyltransferase | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.41 | SMc01193 | | hypothetical protein | 0.28 | SMc00450 | | protoheme IX farnesyltransferase | low | > 103 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_01224 | | putative metal-dependent hydrolase YcfH | 0.16 | MPMX26_01158 | | Protoheme IX farnesyltransferase | low | > 36 |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c07990 | | putative hydrolase, TatD family | 0.30 | PGA1_c06260 | | protoheme IX farnesyltransferase CtaB | — | — |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_0920 | | hydrolase, TatD family (RefSeq) | 0.29 | Dshi_1141 | | protoheme IX farnesyltransferase (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.37 | ABIE41_RS15945 | | TatD family hydrolase | 0.27 | ABIE41_RS22955 | | heme o synthase | low | > 77 |
| Agrobacterium fabrum C58 | 0.36 | Atu1495 | | hypothetical protein | 0.28 | Atu0769 | | protoheme IX farnesyltransferase | low | > 89 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS09480 | | TatD family hydrolase | 0.30 | ABIE40_RS04070 | | heme o synthase | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS04755 | | TatD family hydrolase | 0.32 | A4249_RS00115 | | heme o synthase | low | > 48 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_3420 | | hydrolase, TatD family | 0.47 | HP15_3780 | | protoheme IX farnesyltransferase | low | > 73 |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_01898 | | Mg-dependent Dnase TatD | 0.30 | CCNA_03516 | | protoheme IX farnesyltransferase coxE | low | > 67 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_01898 | | Mg-dependent Dnase TatD | 0.30 | CCNA_03516 | | protoheme IX farnesyltransferase coxE | low | > 66 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS25085 | | hydrolase TatD | 0.21 | CA265_RS17805 | | protoheme IX farnesyltransferase | — | — |
| Mycobacterium tuberculosis H37Rv | 0.27 | Rv1008 | | Probable deoxyribonuclease TatD (YJJV protein) | 0.25 | Rv1451 | | Probable cytochrome C oxidase assembly factor CtaB | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.26 | ABZR88_RS21615 | | TatD family hydrolase | 0.18 | ABZR88_RS03670 | | heme o synthase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_0081 | | hydrolase, TatD family | 0.21 | Echvi_2105 | | protoheme IX farnesyltransferase | — | — |
Not shown: 13 genomes with orthologs for RR42_RS10885 only; 7 genomes with orthologs for RR42_RS01920 only