| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS07190 | | efflux RND transporter permease subunit | 1.0 | QEN71_RS07195 | | efflux RND transporter periplasmic adaptor subunit | 0.75 | 1 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.88 | H281DRAFT_05197 | | Multidrug efflux pump subunit AcrB | 0.65 | H281DRAFT_05198 | | RND family efflux transporter, MFP subunit | 0.40 | 1 |
| Paraburkholderia graminis OAS925 | 0.88 | ABIE53_002354 | | multidrug efflux pump | 0.67 | ABIE53_002353 | | multidrug efflux system membrane fusion protein | 0.93 | 1 |
| Burkholderia phytofirmans PsJN | 0.88 | BPHYT_RS11375 | | acriflavin resistance protein | 0.69 | BPHYT_RS11370 | | RND transporter MFP subunit | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.71 | HSERO_RS01325 | | cation/multidrug efflux protein | 0.45 | HSERO_RS01320 | | RND transporter MFP subunit | 0.29 | 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS11125 | | efflux RND transporter permease subunit | 0.45 | ABZR86_RS11130 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_1566 | | Cation/multidrug efflux pump | 0.23 | Psest_1565 | | RND family efflux transporter, MFP subunit | 0.34 | 1 |
| Dechlorosoma suillum PS | 0.53 | Dsui_0408 | | cation/multidrug efflux pump | 0.30 | Dsui_0409 | | RND family efflux transporter, MFP subunit | 0.76 | 12 |
| Azospirillum sp. SherDot2 | 0.52 | MPMX19_05260 | | Cobalt-zinc-cadmium resistance protein CzcA | 0.24 | MPMX19_05261 | | Multidrug resistance protein MdtE | low | > 112 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS06185 | | efflux RND transporter permease subunit | 0.25 | PFLU_RS06180 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS06185 | | efflux RND transporter permease subunit | 0.25 | PFLU_RS06180 | | efflux RND transporter periplasmic adaptor subunit | 0.27 | 1 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_16365 | | multidrug transporter AcrB | 0.24 | AO353_16360 | | RND transporter | 0.90 | 2 |
| Acinetobacter radioresistens SK82 | 0.52 | MPMX26_03010 | | Cobalt-zinc-cadmium resistance protein CzcA | 0.26 | MPMX26_03011 | | Multidrug resistance protein MdtA | 0.67 | 14 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_3063 | | RND efflux transporter | 0.24 | Pf1N1B4_3062 | | RND efflux membrane fusion protein | 0.26 | 15 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_4730 | | RND efflux transporter | 0.24 | PfGW456L13_4731 | | RND efflux membrane fusion protein | low | > 87 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_06115 | | multidrug transporter AcrB | 0.24 | PS417_06110 | | RND transporter | low | > 88 |
| Pseudomonas sp. S08-1 | 0.52 | OH686_06740 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | 0.27 | OH686_06745 | | Multidrug efflux system, membrane fusion component | 0.84 | 5 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_00379 | | Cobalt-zinc-cadmium resistance protein CzcA | 0.25 | PFR28_00378 | | Multidrug resistance protein MdtA | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_06130 | | multidrug transporter AcrB | 0.24 | AO356_06135 | | RND transporter | 0.37 | 1 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_3091 | | RND efflux transporter | 0.23 | Pf6N2E2_3092 | | RND efflux membrane fusion protein | 0.25 | 72 |
| Pseudomonas putida KT2440 | 0.51 | PP_1517 | | RND efflux transporter | 0.21 | PP_1516 | | RND membrane fusion protein | 0.16 | 39 |
| Lysobacter sp. OAE881 | 0.51 | ABIE51_RS17595 | | efflux RND transporter permease subunit | 0.23 | ABIE51_RS17600 | | efflux RND transporter periplasmic adaptor subunit | 0.80 | 3 |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS01385 | | AcrB/AcrD/AcrF family protein | 0.22 | RALBFv3_RS01390 | | efflux RND transporter periplasmic adaptor subunit | 0.43 | 18 |
| Ralstonia solanacearum UW163 | 0.49 | UW163_RS14695 | | AcrB/AcrD/AcrF family protein | 0.22 | UW163_RS14700 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.49 | ABZR87_RS13180 | | efflux RND transporter permease subunit | 0.22 | ABZR87_RS13185 | | efflux RND transporter periplasmic adaptor subunit | 0.87 | 2 |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS16100 | | AcrB/AcrD/AcrF family protein | 0.22 | RPSI07_RS16095 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.49 | RS_RS08335 | | AcrB/AcrD/AcrF family protein | 0.22 | RS_RS08330 | | efflux RND transporter periplasmic adaptor subunit | 0.39 | 28 |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS07915 | | multidrug transporter AcrB | 0.22 | RR42_RS07910 | | RND transporter MFP subunit | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.47 | Ac3H11_933 | | Probable transmembrane drug efflux protein | 0.23 | Ac3H11_932 | | Probable Co/Zn/Cd efflux system membrane fusion protein | 0.50 | 6 |
| Variovorax sp. SCN45 | 0.46 | GFF493 | | RND efflux system, inner membrane transporter | 0.21 | GFF494 | | RND efflux system, membrane fusion protein | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF4033 | | Probable transmembrane drug efflux protein | 0.18 | GFF4032 | | Probable Co/Zn/Cd efflux system membrane fusion protein | low | > 90 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS17615 | | efflux RND transporter permease subunit | 0.19 | ABID97_RS17620 | | efflux RND transporter periplasmic adaptor subunit | low | > 91 |
| Rhodopseudomonas palustris CGA009 | 0.45 | TX73_022880 | | efflux RND transporter permease subunit | 0.23 | TX73_010105 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_0346 | | Acriflavin resistance protein | 0.21 | Psyr_3131 | | Secretion protein HlyD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_0346 | | Acriflavin resistance protein | 0.21 | Psyr_3131 | | Secretion protein HlyD | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.43 | SM_b20345 | | efflux protein | 0.21 | SM_b20346 | | efflux protein | 0.93 | 1 |
| Rhizobium sp. OAE497 | 0.42 | ABIE40_RS17045 | | efflux RND transporter permease subunit | 0.22 | ABIE40_RS17050 | | efflux RND transporter periplasmic adaptor subunit | 0.93 | 1 |
| Agrobacterium fabrum C58 | 0.41 | Atu5381 | | AcrB/AcrD/AcrF family protein | 0.22 | Atu3797 | | HlyD family secretion protein | — | — |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS08250 | | efflux RND transporter permease subunit | 0.23 | DZA65_RS04590 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Bosea sp. OAE506 | 0.39 | ABIE41_RS18635 | | efflux RND transporter permease subunit | 0.21 | ABIE41_RS18640 | | efflux RND transporter periplasmic adaptor subunit | 0.59 | 13 |
| Rahnella sp. WP5 | 0.39 | EX31_RS17700 | | efflux RND transporter permease subunit | 0.22 | EX31_RS17705 | | efflux RND transporter periplasmic adaptor subunit | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.38 | HER17_RS07500 | | efflux RND transporter permease subunit | 0.22 | HER17_RS07495 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS04730 | | efflux RND transporter permease subunit | 0.23 | DDA3937_RS04725 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS05720 | | cation/multidrug efflux pump | 0.21 | BWI76_RS10855 | | RND family efflux transporter MFP subunit | low | > 92 |
| Enterobacter sp. TBS_079 | 0.37 | MPMX20_02160 | | Nickel and cobalt resistance protein CnrA | 0.19 | MPMX20_02161 | | Multidrug resistance protein MdtA | low | > 85 |
| Dickeya dianthicola 67-19 | 0.37 | HGI48_RS07915 | | efflux RND transporter permease subunit | 0.18 | HGI48_RS07920 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.557.1 | | cation efflux system protein | 0.16 | Xcc-8004.556.1 | | component of multidrug efflux system | low | > 74 |
| Pantoea sp. MT58 | 0.37 | IAI47_07210 | | efflux RND transporter permease subunit | 0.20 | IAI47_21720 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_1393 | | Cation/multidrug efflux pump | 0.20 | EX28DRAFT_1519 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS32765 | | multidrug transporter | 0.23 | AZOBR_RS28420 | | RND transporter | low | > 97 |
| Caulobacter crescentus NA1000 | 0.36 | CCNA_01866 | | cation/multidrug efflux pump acrB4 | 0.18 | CCNA_01865 | | periplasmic multidrug efflux lipoprotein precursor | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.36 | CCNA_01866 | | cation/multidrug efflux pump acrB4 | 0.18 | CCNA_01865 | | periplasmic multidrug efflux lipoprotein precursor | low | > 67 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_1118 | | transporter, AcrB/D/F family | 0.16 | HP15_1119 | | efflux transporter, RND family, MFP subunit | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.27 | CSW01_08410 | | AcrB/AcrD/AcrF family protein | 0.18 | CSW01_08810 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Shewanella amazonensis SB2B | 0.26 | Sama_0675 | | AcrB/AcrD/AcrF family transporter (RefSeq) | 0.12 | Sama_0674 | | periplasmic linker protein (RefSeq) | 0.49 | 16 |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_3849 | | acriflavin resistance protein (RefSeq) | 0.15 | Shewana3_3571 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.25 | Shew_0466 | | acriflavin resistance protein (RefSeq) | 0.15 | Shew_0467 | | RND family efflux transporter MFP subunit (RefSeq) | 0.44 | 3 |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_01561 | | Swarming motility protein SwrC | 0.14 | MIT1002_01562 | | Toluene efflux pump periplasmic linker protein TtgD precursor | 0.96 | 1 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.22 | BT1694 | | transporter, AcrB/D/F family (NCBI ptt file) | 0.14 | BT1693 | | periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.22 | HMPREF1181_RS05555 | | efflux RND transporter permease subunit | 0.13 | HMPREF1181_RS05550 | | efflux RND transporter periplasmic adaptor subunit | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.22 | HMPREF1078_RS01920 | | efflux RND transporter permease subunit | 0.12 | HMPREF1078_RS01915 | | efflux RND transporter periplasmic adaptor subunit | 0.58 | 50 |
| Phocaeicola vulgatus CL09T03C04 | 0.22 | HMPREF1058_RS07330 | | efflux RND transporter permease subunit | 0.12 | HMPREF1058_RS07125 | | efflux RND transporter periplasmic adaptor subunit | low | > 67 |
| Bacteroides ovatus ATCC 8483 | 0.22 | BACOVA_04448 | | putative ATP synthase F0, A subunit | 0.14 | BACOVA_04447 | | efflux transporter, RND family, MFP subunit | low | > 94 |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS21010 | | efflux RND transporter permease subunit | 0.12 | ABI39_RS21015 | | efflux RND transporter periplasmic adaptor subunit | low | > 72 |
Not shown: 8 genomes with orthologs for QEN71_RS07190 only; 0 genomes with orthologs for QEN71_RS07195 only